Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0007426

Physical Location & Seq

Genomic Coordinates Reverse (-)

232078 .. 235121

Gene Structure 3044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

atggcgtgtctgccgccactgatgactagttcaactgccatctgctccgctgactgtgacgatcggcggccgtaccggtccctgaggtatgatcgttggaatggttgtgatgagaagaacacgaaatcgacaggaagcaagtaccagaggaggaggaggaggaggagccttgttcttggctctgcttcttctgcttctgcttcccctcgttcccatatttatcagcaggttcttaaggctgccagacaaaagtttactcaggagatctccttccagtctaaagacaaggacgtctctcttgcaaaggctttgctctacatagcagctgaagatgaggcatttatggcttttaatcgagagatggatgctttctcaattcataatgaaagaaaaggtgtttctggctcatctactccccaagacctagtgtggaatactgtggagggaatgccattggccggaaaaaatatacacgagtggcaagctgaactggatgctattgccaaagaagttgaagcagagctaatttcaaaagacataggttgtcatttggctcaagttttggaggcagtgaatgtggttcttttcgagtcaagaggcttcagaaggtcaccccttcttggagatgcaaagaattcatacttgcacttagttctaagctctggaagtggaattgcaattatgcttagcattatatacattgaggtttgccgaagacttagtctgaccatagtgggatctcgagttggggaagaatttttgatctggccgcaaactggatatccagaggagctgttcaaggtaacgtcaggacacagtctgtttgcaattgtcaatggaaggtgtgtcgaagaccctagatcaaaggcatcggatttaacaagcaattcactgtcagggcttgagatagctacaaaccgagacattattgggattgctttagccaatcttgttaggcttcactggaaacatgcttcaagatcaactcatggactgatgctgacttctccactcaggcacgttcacaatgctcatgataaactttacaaaatcactgattcaaaggctcctctgttacgaccccgagaactcaggttggccatcatggcttcagaaagattgttgattctgcaaccacataattgggcttcgaggagagaccatggcatgatgttatactacaatagggagtacgggaaggctgtccaagagcttagcatatgcatggcttttgccccagaagaagaggcagaagttcttgaaccatttgttgaaaaattacatctgctgcggcttgaatcatcatggaaatctttagagcactcaagtcaactgaaagtctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_9 Transglut_core2

Protein Analysis

448

Amino Acids

50.4

Weight (kDa)

8.78

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19160 AT4G19160 AT4G19160 AT4G19160
fragaria_vesca	FvH4_2g37180 FvH4_2g37220
prunus_persica	Prupe.1G352900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402301 RchiOBHm_Chr6g0304491
rosa_laevigata	RLG00000006643 RLG00000010972 RLG00000033770 RLG00000034679
rosa_multiflora	Rmu_ssc0000218.1_g000055
rosa_roxburghii	Rroxscaffold_7G00163700
rosa_rugosa	Rorug06G0332200 Rorug06G0332300 Rorug06G0332400
rosa_samantha	Rh4BG074000 Rh5CG116700 Rh6AG445000 Rh6BG457400 Rh6CG457700 Rh6DG444500
rosa_wichuraiana	Rw6G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AatII	GACGTC	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	5 cut(s)	14, 48, 67, 770, 1291
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	4 cut(s)	68, 456, 767, 1098
AcsI	RAATTY	2 cut(s)	634, 755
AcuI	CTGAAG	3 cut(s)	348, 586, 1095
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	3 cut(s)	74, 143, 1193
AfiI	CCNNNNNNNGG	3 cut(s)	458, 620, 776
AflII	CTTAAG	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	75
AgsI	TTSAA	9 cut(s)	33, 515, 531, 799, 978, 1062, 1262, 1274, 1298
AhlI	ACTAGT	1 cut(s)	26
AluBI	AGCT	7 cut(s)	326, 485, 523, 660, 793, 911, 1213
AluI	AGCT	7 cut(s)	326, 485, 523, 660, 793, 911, 1213
Alw21I	GWGCWC	1 cut(s)	1323
Alw26I	GTCTC	3 cut(s)	298, 915, 1152
AlwI	GGATC	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	741, 1083
AoxI	GGCC	4 cut(s)	68, 456, 767, 1098
ApeKI	GCWGC	3 cut(s)	239, 323, 1288
ApoI	RAATTY	2 cut(s)	634, 755
ArsI	GACNNNNNNTTYG	2 cut(s)	706, 738
AsiGI	ACCGGT	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	603
AvaI	CYCGRG	2 cut(s)	741, 1083
AvaII	GGWCC	1 cut(s)	78
AxyI	CCTNAGG	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	1100
BauI	CACGAG	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	721, 858
Bbv12I	GWGCWC	1 cut(s)	1323
BbvI	GCAGC	3 cut(s)	226, 335, 1275
BccI	CCATC	3 cut(s)	47, 355, 1109
BceAI	ACGGC	1 cut(s)	55
BcoDI	GTCTC	3 cut(s)	298, 915, 1152
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	3 cut(s)	27, 425, 858
BfrI	CTTAAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	217
BglI	GCCNNNNNGGC	1 cut(s)	1106
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	7 cut(s)	14, 68, 240, 324, 770, 1289, 1292
BlpI	GCTNAGC	2 cut(s)	686, 1214
BlsI	GCNGC	7 cut(s)	15, 69, 241, 325, 771, 1290, 1293
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	2 cut(s)	741, 1083
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	80, 167, 1068
BmsI	GCATC	5 cut(s)	355, 484, 616, 878, 987
BpiI	GAAGAC	2 cut(s)	721, 858
Bpu1102I	GCTNAGC	2 cut(s)	686, 1214
BpuEI	CTTGAG	3 cut(s)	540, 923, 1309
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	1152
BsaJI	CCNNGG	1 cut(s)	1162
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	3 cut(s)	458, 620, 776
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	4 cut(s)	274, 495, 781, 968
Bse21I	CCTNAGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	1162
BseGI	GGATG	2 cut(s)	370, 499
BseLI	CCNNNNNNNGG	3 cut(s)	458, 620, 776
BseMII	CTCAG	4 cut(s)	74, 272, 1027, 1105
BseNI	ACTGG	4 cut(s)	274, 495, 781, 968
BseRI	GAGGAG	9 cut(s)	163, 166, 169, 172, 175, 178, 803, 1059, 1168
BseX3I	CGGCCG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	226, 335, 1275
Bsh1285I	CGRYCG	2 cut(s)	64, 71
BshFI	GGCC	4 cut(s)	70, 458, 769, 1100
BshTI	ACCGGT	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	64, 71
BsiHKAI	GWGCWC	1 cut(s)	1323
BsiHKCI	CYCGRG	2 cut(s)	741, 1083
BsiSI	CCGG	2 cut(s)	76, 459
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	458, 620, 776
BsmAI	GTCTC	3 cut(s)	298, 915, 1152
BsmBI	CGTCTC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	4 cut(s)	70, 458, 769, 1100
Bso31I	GGTCTC	1 cut(s)	1152
BsoBI	CYCGRG	2 cut(s)	741, 1083
Bsp1286I	GDGCHC	1 cut(s)	1323
Bsp143I	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
Bsp1720I	GCTNAGC	2 cut(s)	686, 1214
Bsp19I	CCATGG	1 cut(s)	1162
BspACI	CCGC	5 cut(s)	14, 48, 67, 770, 1291
BspANI	GGCC	4 cut(s)	70, 458, 769, 1100
BspCNI	CTCAG	4 cut(s)	75, 271, 1026, 1104
BspHI	TCATGA	1 cut(s)	1033
BspLI	GGNNCC	3 cut(s)	80, 167, 1068
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	745
BspTI	CTTAAG	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	1152
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	4 cut(s)	274, 495, 781, 968
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	1162
BssMI	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	1 cut(s)	1162
Bst2BI	CACGAG	1 cut(s)	473
Bst4CI	ACNGT	4 cut(s)	56, 439, 818, 894
Bst6I	CTCTTC	1 cut(s)	1239
BstACI	GRCGYC	1 cut(s)	291
BstAFI	CTTAAG	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	9 cut(s)	83, 258, 649, 656, 686, 719, 1013, 1091, 1214
BstDSI	CCRYGG	1 cut(s)	1162
BstEII	GGTNACC	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	370, 499
BstKTI	GATC	7 cut(s)	64, 94, 267, 740, 765, 863, 983
BstMAI	GTCTC	3 cut(s)	298, 915, 1152
BstMBI	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
BstMCI	CGRYCG	2 cut(s)	64, 71
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 344, 1106
BstNSI	RCATGY	1 cut(s)	974
BstPI	GGTNACC	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	226, 335, 1275
BstV2I	GAAGAC	2 cut(s)	721, 858
BstX2I	RGATCY	2 cut(s)	264, 737
BstXI	CCANNNNNNTGG	1 cut(s)	1143
BstYI	RGATCY	2 cut(s)	264, 737
BstZI	CGGCCG	1 cut(s)	68
Bsu36I	CCTNAGG	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	70, 458, 769, 1100
BtgI	CCRYGG	1 cut(s)	1162
BtsCI	GGATG	2 cut(s)	370, 499
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	5 cut(s)	17, 576, 890, 961, 1053
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	483
CciI	TCATGA	1 cut(s)	1033
Cfr10I	RCCGGY	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	3 cut(s)	73, 142, 1192
CspAI	ACCGGT	1 cut(s)	75
CviAII	CATG	8 cut(s)	971, 989, 1034, 1105, 1163, 1168, 1225, 1305
CviQI	GTAC	3 cut(s)	73, 142, 1192
DdeI	CTNAG	9 cut(s)	83, 258, 649, 656, 686, 719, 1013, 1091, 1214
DpnI	GATC	7 cut(s)	63, 93, 266, 739, 764, 862, 982
DpnII	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
EaeI	YGGCCR	4 cut(s)	68, 456, 767, 1098
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	1239
EarI	CTCTTC	1 cut(s)	1239
EclXI	CGGCCG	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	1162
Eco31I	GGTCTC	1 cut(s)	1152
Eco32I	GATATC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	68
Eco57I	CTGAAG	3 cut(s)	348, 586, 1095
Eco81I	CCTNAGG	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	741, 1083
Eco91I	GGTNACC	1 cut(s)	609
EcoO65I	GGTNACC	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	1162
EcoT22I	ATGCAT	1 cut(s)	1226
ErhI	CCWWGG	1 cut(s)	1162
Esp3I	CGTCTC	1 cut(s)	298
FaeI	CATG	8 cut(s)	974, 992, 1037, 1108, 1166, 1171, 1228, 1308
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	8 cut(s)	970, 988, 1033, 1104, 1162, 1167, 1224, 1304
FauNDI	CATATG	1 cut(s)	1220
Fnu4HI	GCNGC	7 cut(s)	14, 68, 240, 324, 770, 1289, 1292
FokI	GGATG	2 cut(s)	377, 506
Fsp4HI	GCNGC	7 cut(s)	14, 68, 240, 324, 770, 1289, 1292
FspBI	CTAG	3 cut(s)	27, 425, 858
GluI	GCNGC	7 cut(s)	14, 68, 240, 324, 770, 1289, 1292
HaeIII	GGCC	4 cut(s)	70, 458, 769, 1100
HapII	CCGG	2 cut(s)	76, 459
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	8 cut(s)	974, 992, 1037, 1108, 1166, 1171, 1228, 1308
HincII	GTYRAC	1 cut(s)	1331
HindII	GTYRAC	1 cut(s)	1331
HinfI	GANTC	4 cut(s)	590, 1058, 1126, 1298
HpaII	CCGG	2 cut(s)	76, 459
HphI	GGTGA	1 cut(s)	603
Hpy166II	GTNNAC	3 cut(s)	255, 1024, 1331
Hpy188I	TCNGA	4 cut(s)	605, 726, 874, 1114
Hpy8I	GTNNAC	3 cut(s)	255, 1024, 1331
HpyAV	CCTTC	5 cut(s)	280, 600, 626, 834, 1192
HpyCH4III	ACNGT	4 cut(s)	56, 439, 818, 894
HpyCH4IV	ACGT	3 cut(s)	291, 806, 1020
HpyCH4V	TGCA	7 cut(s)	302, 629, 646, 677, 827, 1132, 1224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 344, 1106
HpyF3I	CTNAG	9 cut(s)	83, 258, 649, 656, 686, 719, 1013, 1091, 1214
HpySE526I	ACGT	3 cut(s)	291, 806, 1020
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	8 cut(s)	974, 992, 1037, 1108, 1166, 1171, 1228, 1308
Kzo9I	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
LmnI	GCTCC	4 cut(s)	50, 165, 790, 1072
Lsp1109I	GCAGC	3 cut(s)	226, 335, 1275
LweI	GCATC	5 cut(s)	355, 484, 616, 878, 987
MaeI	CTAG	3 cut(s)	27, 425, 858
MaeII	ACGT	3 cut(s)	291, 806, 1020
MaeIII	GTNAC	4 cut(s)	56, 609, 802, 1074
MalI	GATC	7 cut(s)	63, 93, 266, 739, 764, 862, 982
MboI	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
MboII	GAAGA	8 cut(s)	127, 180, 341, 726, 764, 863, 1253, 1256
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	2 cut(s)	264, 737
MhlI	GDGCHC	1 cut(s)	1323
MlsI	TGGCCA	1 cut(s)	1100
MluNI	TGGCCA	1 cut(s)	1100
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	77
Mox20I	TGGCCA	1 cut(s)	1100
Mph1103I	ATGCAT	1 cut(s)	1226
MscI	TGGCCA	1 cut(s)	1100
MseI	TTAA	4 cut(s)	234, 351, 878, 1345
MslI	CAYNNNNRTG	1 cut(s)	1223
Msp20I	TGGCCA	1 cut(s)	1100
MspA1I	CMGCKG	2 cut(s)	50, 326
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	2 cut(s)	76, 459
MunI	CAATTG	1 cut(s)	828
Mva1269I	GAATGC	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	191, 344, 1106
NcoI	CCATGG	1 cut(s)	1162
NdeI	CATATG	1 cut(s)	1220
NdeII	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
NlaIII	CATG	8 cut(s)	974, 992, 1037, 1108, 1166, 1171, 1228, 1308
NlaIV	GGNNCC	3 cut(s)	80, 167, 1068
NmuCI	GTSAC	2 cut(s)	56, 609
NsiI	ATGCAT	1 cut(s)	1226
NspI	RCATGY	1 cut(s)	974
PaeR7I	CTCGAG	1 cut(s)	741
PagI	TCATGA	1 cut(s)	1033
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	1058, 1126, 1298
PflFI	GACNNNGTC	2 cut(s)	720, 816
PinAI	ACCGGT	1 cut(s)	75
PkrI	GCNGC	7 cut(s)	15, 69, 241, 325, 771, 1290, 1293
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
PspEI	GGTNACC	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	80, 167, 1068
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	264, 737
PsyI	GACNNNGTC	2 cut(s)	720, 816
PvuI	CGATCG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	3 cut(s)	74, 143, 1193
RsaNI	GTAC	3 cut(s)	73, 142, 1192
RseI	CAYNNNNRTG	1 cut(s)	1223
SaqAI	TTAA	4 cut(s)	234, 351, 878, 1345
SatI	GCNGC	7 cut(s)	14, 68, 240, 324, 770, 1289, 1292
Sau3AI	GATC	7 cut(s)	61, 91, 264, 737, 762, 860, 980
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	1323
SfaNI	GCATC	5 cut(s)	355, 484, 616, 878, 987
Sfr274I	CTCGAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	1 cut(s)	1223
SmlI	CTYRAG	5 cut(s)	233, 555, 741, 902, 1324
SmoI	CTYRAG	5 cut(s)	233, 555, 741, 902, 1324
SpeI	ACTAGT	1 cut(s)	26
SsiI	CCGC	5 cut(s)	14, 48, 67, 770, 1291
SspMI	CTAG	3 cut(s)	27, 425, 858
StyI	CCWWGG	1 cut(s)	1162
TaaI	ACNGT	4 cut(s)	56, 439, 818, 894
TaiI	ACGT	3 cut(s)	294, 809, 1023
TaqI	TCGA	6 cut(s)	128, 355, 588, 742, 849, 1151
TauI	GCSGC	4 cut(s)	16, 70, 772, 1294
TfiI	GAWTC	3 cut(s)	1058, 1126, 1298
Tru1I	TTAA	4 cut(s)	234, 351, 878, 1345
Tru9I	TTAA	4 cut(s)	234, 351, 878, 1345
TscAI	CASTG	5 cut(s)	24, 576, 897, 968, 1060
TseFI	GTSAC	2 cut(s)	56, 609
TseI	GCWGC	3 cut(s)	239, 323, 1288
Tsp45I	GTSAC	2 cut(s)	56, 609
TspDTI	ATGAA	3 cut(s)	368, 399, 627
TspRI	CASTG	5 cut(s)	24, 576, 897, 968, 1060
Tth111I	GACNNNGTC	2 cut(s)	720, 816
Vha464I	CTTAAG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	2 cut(s)	634, 755
XceI	RCATGY	1 cut(s)	974
XhoI	CTCGAG	1 cut(s)	741
XspI	CTAG	3 cut(s)	27, 425, 858
ZraI	GACGTC	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.