RLG00000010972
ERF Family

Transglutaminase-like superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
5772814 .. 5775860
3047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010972

Sequence Viewer

Length: 1341 bp
ATGGCGTGTCTGCCGCCACTGATGACTAGTTCAACTGCCATCTGCTCCGCTGACTGTGACGATCGGCGGCCGTACCGGTCCCTGAGGTATGATCGTTGGAATGGTTGTGATGAGAAGAACACGAAATCGACAGGAAGCAAGTACCAGAGGAGGAGGAGGAGCCTTGTTCTTGGCTCTGCTTCTTCTGCTTCTGCTTCCCCTCGTTCCCATATTTATCAGCAGGTTCTTAAGGCTGCCAGACAAAAGTTTGCTCAGGAGATCTCCTTCCAGTCTAAAGACAAGGACGTCTCTCTTGCGAAGGCTTTGCTCTACATAGCAGCTGAAGATGAGGCATTTATGGCTTTTAATCGAGAGATGGATGCTTTCTCAATTCATAATGAAAGAAAAGGTGTTTCTGGCTCATCTACTCCCCAAGACCTAGCGTGGAATACTGTGGAGGGAATGCCATTGGCCGGTAAAAATATACACGAGTGGCAAGCTGAACTGGATGCTATTGCCAAAGAAGTTGAAGCAGAGCTAATTTCAAAAGACATAGGTTGTCATTTGGCTCAAGTTTTGGAGGCAGTGAATGTGGTTCTTTTCGAGTCAAGAGGCTTCAGAAGGTCACCCGTTCTTGGAGATGCAAAGAATTCGTACTTGCACTTAGTTCTAAGCTCTGGGAGTGGAATTGCAATTATGCTTAGCATTATATACATTGAGGTTTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAGGATATCCAGAGGAGCTGTTCAAGGTAACTTCAGGACACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAAGGCATCGGATTTAACAAGCAATTCACTGTCAGGGCTTGAGATAGCTACAAACCGAGACATTATTGGGATTGCTTTGGCCAATCTTGTTAGGCTTCACTGGAAACATGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGGCACATTCACAATGCTCATGATAAACTATACAAAATCACTGATTCAAAGGCTCCTCTGTTACGACCCCGAGAACTCAGGTTGGCCATCATGGCTTCCGAAAGATTGTTGATTCTGCAACCACATAATTGGGCTTCGAGGAGAGACCATGGCATGATGTTATACTACAATAGGGAGTACGGGAAGGCTGTCCAAGAGCTTAGCATATGCATGGCTTTTGCCCCAGAAGAAGAGGCAGAAGTTCTTGAACCATTTGTTGAAAAATTACATCTGCTGCGGCTTGAATCATCATGGAAATCTTTAGAGCACTCAAGTCAACTGAAAGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

50.03

Weight (kDa)

8.51

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 157 - 310 1.6e-21 Transglutaminase-like superfamily
TPR_9 PF13371 356 - 413 3.6e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 284
AatII GACGTC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 211
AciI CCGC 5 cut(s) 14, 48, 67, 764, 1285
AclWI GGATC 1 cut(s) 739
AcoI YGGCCR 5 cut(s) 68, 450, 761, 936, 1092
AcsI RAATTY 2 cut(s) 628, 749
AcuI CTGAAG 3 cut(s) 342, 580, 786
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 4 cut(s) 74, 143, 635, 1187
AfiI CCNNNNNNNGG 3 cut(s) 452, 614, 770
AflII CTTAAG 1 cut(s) 227
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 9 cut(s) 33, 509, 525, 793, 972, 1056, 1256, 1268, 1292
AhlI ACTAGT 1 cut(s) 26
AluBI AGCT 7 cut(s) 320, 479, 517, 654, 787, 905, 1207
AluI AGCT 7 cut(s) 320, 479, 517, 654, 787, 905, 1207
Alw21I GWGCWC 1 cut(s) 1317
Alw26I GTCTC 3 cut(s) 292, 909, 1146
AlwI GGATC 1 cut(s) 739
Ama87I CYCGRG 2 cut(s) 735, 1077
AoxI GGCC 5 cut(s) 68, 450, 761, 936, 1092
ApeKI GCWGC 3 cut(s) 233, 317, 1282
ApoI RAATTY 2 cut(s) 628, 749
ArsI GACNNNNNNTTYG 2 cut(s) 700, 732
AsiGI ACCGGT 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 597
AvaI CYCGRG 2 cut(s) 735, 1077
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 83
BalI TGGCCA 2 cut(s) 938, 1094
BauI CACGAG 1 cut(s) 467
BbsI GAAGAC 2 cut(s) 715, 852
Bbv12I GWGCWC 1 cut(s) 1317
BbvI GCAGC 3 cut(s) 220, 329, 1269
BccI CCATC 3 cut(s) 47, 349, 1103
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 4 cut(s) 286, 320, 612, 646
BcoDI GTCTC 3 cut(s) 292, 909, 1146
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 419, 852
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 211
BglI GCCNNNNNGGC 1 cut(s) 1100
BglII AGATCT 1 cut(s) 258
BisI GCNGC 7 cut(s) 14, 68, 234, 318, 764, 1283, 1286
BlpI GCTNAGC 2 cut(s) 680, 1208
BlsI GCNGC 7 cut(s) 15, 69, 235, 319, 765, 1284, 1287
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 2 cut(s) 735, 1077
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 3 cut(s) 80, 161, 1062
BmsI GCATC 5 cut(s) 349, 478, 610, 872, 981
BpiI GAAGAC 2 cut(s) 715, 852
Bpu10I CCTNAGC 1 cut(s) 252
Bpu1102I GCTNAGC 2 cut(s) 680, 1208
BpuEI CTTGAG 3 cut(s) 534, 917, 1303
BsaHI GRCGYC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 1146
BsaJI CCNNGG 1 cut(s) 1156
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 452, 614, 770
Bse118I RCCGGY 2 cut(s) 75, 452
Bse1I ACTGG 3 cut(s) 268, 489, 962
Bse21I CCTNAGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 1156
BseGI GGATG 2 cut(s) 364, 493
BseLI CCNNNNNNNGG 3 cut(s) 452, 614, 770
BseMII CTCAG 4 cut(s) 74, 266, 1021, 1099
BseNI ACTGG 3 cut(s) 268, 489, 962
BseRI GAGGAG 7 cut(s) 163, 166, 169, 172, 797, 1053, 1162
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 220, 329, 1269
Bsh1285I CGRYCG 2 cut(s) 64, 71
BshFI GGCC 5 cut(s) 70, 452, 763, 938, 1094
BshTI ACCGGT 1 cut(s) 75
BsiEI CGRYCG 2 cut(s) 64, 71
BsiHKAI GWGCWC 1 cut(s) 1317
BsiHKCI CYCGRG 2 cut(s) 735, 1077
BsiSI CCGG 2 cut(s) 76, 453
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 452, 614, 770
BsmAI GTCTC 3 cut(s) 292, 909, 1146
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 447
BsnI GGCC 5 cut(s) 70, 452, 763, 938, 1094
Bso31I GGTCTC 1 cut(s) 1146
BsoBI CYCGRG 2 cut(s) 735, 1077
Bsp1286I GDGCHC 1 cut(s) 1317
Bsp143I GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
Bsp1720I GCTNAGC 2 cut(s) 680, 1208
Bsp19I CCATGG 1 cut(s) 1156
BspACI CCGC 5 cut(s) 14, 48, 67, 764, 1285
BspANI GGCC 5 cut(s) 70, 452, 763, 938, 1094
BspCNI CTCAG 4 cut(s) 75, 265, 1020, 1098
BspHI TCATGA 1 cut(s) 1027
BspLI GGNNCC 3 cut(s) 80, 161, 1062
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 1 cut(s) 739
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 1146
BsrFI RCCGGY 2 cut(s) 75, 452
BsrI ACTGG 3 cut(s) 268, 489, 962
BssAI RCCGGY 2 cut(s) 75, 452
BssECI CCNNGG 1 cut(s) 1156
BssMI GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 56, 433, 812, 888
Bst6I CTCTTC 1 cut(s) 1233
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 9 cut(s) 83, 252, 643, 650, 680, 713, 1007, 1085, 1208
BstDSI CCRYGG 1 cut(s) 1156
BstEII GGTNACC 1 cut(s) 603
BstF5I GGATG 2 cut(s) 364, 493
BstKTI GATC 7 cut(s) 64, 94, 261, 734, 759, 857, 977
BstMAI GTCTC 3 cut(s) 292, 909, 1146
BstMBI GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
BstMCI CGRYCG 2 cut(s) 64, 71
BstMWI GCNNNNNNNGC 3 cut(s) 185, 338, 1100
BstNSI RCATGY 1 cut(s) 968
BstPI GGTNACC 1 cut(s) 603
BstV1I GCAGC 3 cut(s) 220, 329, 1269
BstV2I GAAGAC 2 cut(s) 715, 852
BstX2I RGATCY 2 cut(s) 258, 731
BstXI CCANNNNNNTGG 1 cut(s) 1137
BstYI RGATCY 2 cut(s) 258, 731
BstZI CGGCCG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 5 cut(s) 70, 452, 763, 938, 1094
BtgI CCRYGG 1 cut(s) 1156
BtsCI GGATG 2 cut(s) 364, 493
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 5 cut(s) 17, 570, 884, 955, 1047
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 477
CciI TCATGA 1 cut(s) 1027
Cfr10I RCCGGY 2 cut(s) 75, 452
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 4 cut(s) 73, 142, 634, 1186
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 8 cut(s) 965, 983, 1028, 1099, 1157, 1162, 1219, 1299
CviQI GTAC 4 cut(s) 73, 142, 634, 1186
DdeI CTNAG 9 cut(s) 83, 252, 643, 650, 680, 713, 1007, 1085, 1208
DpnI GATC 7 cut(s) 63, 93, 260, 733, 758, 856, 976
DpnII GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
DrdI GACNNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 5 cut(s) 68, 450, 761, 936, 1092
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 1233
EarI CTCTTC 1 cut(s) 1233
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 1156
Eco31I GGTCTC 1 cut(s) 1146
Eco32I GATATC 1 cut(s) 776
Eco47I GGWCC 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 68
Eco57I CTGAAG 3 cut(s) 342, 580, 786
Eco81I CCTNAGG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 735, 1077
Eco91I GGTNACC 1 cut(s) 603
EcoO65I GGTNACC 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 628
EcoRV GATATC 1 cut(s) 776
EcoT14I CCWWGG 1 cut(s) 1156
EcoT22I ATGCAT 1 cut(s) 1220
ErhI CCWWGG 1 cut(s) 1156
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 8 cut(s) 968, 986, 1031, 1102, 1160, 1165, 1222, 1302
FaqI GGGAC 1 cut(s) 64
FatI CATG 8 cut(s) 964, 982, 1027, 1098, 1156, 1161, 1218, 1298
FauNDI CATATG 1 cut(s) 1214
Fnu4HI GCNGC 7 cut(s) 14, 68, 234, 318, 764, 1283, 1286
FokI GGATG 2 cut(s) 371, 500
Fsp4HI GCNGC 7 cut(s) 14, 68, 234, 318, 764, 1283, 1286
FspBI CTAG 3 cut(s) 27, 419, 852
GluI GCNGC 7 cut(s) 14, 68, 234, 318, 764, 1283, 1286
HaeIII GGCC 5 cut(s) 70, 452, 763, 938, 1094
HapII CCGG 2 cut(s) 76, 453
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 8 cut(s) 968, 986, 1031, 1102, 1160, 1165, 1222, 1302
HincII GTYRAC 1 cut(s) 1325
HindII GTYRAC 1 cut(s) 1325
HinfI GANTC 4 cut(s) 584, 1052, 1120, 1292
HpaII CCGG 2 cut(s) 76, 453
HphI GGTGA 1 cut(s) 597
Hpy166II GTNNAC 1 cut(s) 1325
Hpy188I TCNGA 4 cut(s) 599, 720, 868, 1108
Hpy188III TCNNGA 9 cut(s) 254, 350, 588, 735, 779, 804, 972, 1028, 1253
Hpy8I GTNNAC 1 cut(s) 1325
HpyAV CCTTC 5 cut(s) 274, 292, 594, 828, 1186
HpyCH4III ACNGT 4 cut(s) 56, 433, 812, 888
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 623, 640, 671, 821, 1126, 1218
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 338, 1100
HpyF3I CTNAG 9 cut(s) 83, 252, 643, 650, 680, 713, 1007, 1085, 1208
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 8 cut(s) 968, 986, 1031, 1102, 1160, 1165, 1222, 1302
Kzo9I GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
LmnI GCTCC 4 cut(s) 50, 159, 784, 1066
Lsp1109I GCAGC 3 cut(s) 220, 329, 1269
LweI GCATC 5 cut(s) 349, 478, 610, 872, 981
MaeI CTAG 3 cut(s) 27, 419, 852
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 4 cut(s) 56, 603, 796, 1068
MalI GATC 7 cut(s) 63, 93, 260, 733, 758, 856, 976
MboI GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
MboII GAAGA 8 cut(s) 127, 174, 335, 720, 758, 857, 1247, 1250
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 2 cut(s) 258, 731
MhlI GDGCHC 1 cut(s) 1317
MlsI TGGCCA 2 cut(s) 938, 1094
MluNI TGGCCA 2 cut(s) 938, 1094
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 77
Mox20I TGGCCA 2 cut(s) 938, 1094
Mph1103I ATGCAT 1 cut(s) 1220
MscI TGGCCA 2 cut(s) 938, 1094
MseI TTAA 4 cut(s) 228, 345, 872, 1339
MslI CAYNNNNRTG 1 cut(s) 1217
Msp20I TGGCCA 2 cut(s) 938, 1094
MspA1I CMGCKG 2 cut(s) 50, 320
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 2 cut(s) 76, 453
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 185, 338, 1100
NcoI CCATGG 1 cut(s) 1156
NdeI CATATG 1 cut(s) 1214
NdeII GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
NlaIII CATG 8 cut(s) 968, 986, 1031, 1102, 1160, 1165, 1222, 1302
NlaIV GGNNCC 3 cut(s) 80, 161, 1062
NmuCI GTSAC 2 cut(s) 56, 603
NsiI ATGCAT 1 cut(s) 1220
NspI RCATGY 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 735
PagI TCATGA 1 cut(s) 1027
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 3 cut(s) 1052, 1120, 1292
PflFI GACNNNGTC 2 cut(s) 714, 810
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 7 cut(s) 15, 69, 235, 319, 765, 1284, 1287
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PspEI GGTNACC 1 cut(s) 603
PspN4I GGNNCC 3 cut(s) 80, 161, 1062
PspPI GGNCC 1 cut(s) 78
PsuI RGATCY 2 cut(s) 258, 731
PsyI GACNNNGTC 2 cut(s) 714, 810
PvuI CGATCG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 4 cut(s) 74, 143, 635, 1187
RsaNI GTAC 4 cut(s) 73, 142, 634, 1186
RseI CAYNNNNRTG 1 cut(s) 1217
SaqAI TTAA 4 cut(s) 228, 345, 872, 1339
SatI GCNGC 7 cut(s) 14, 68, 234, 318, 764, 1283, 1286
Sau3AI GATC 7 cut(s) 61, 91, 258, 731, 756, 854, 974
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 593
SduI GDGCHC 1 cut(s) 1317
SfaNI GCATC 5 cut(s) 349, 478, 610, 872, 981
Sfr274I CTCGAG 1 cut(s) 735
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 1217
SmlI CTYRAG 5 cut(s) 227, 549, 735, 896, 1318
SmoI CTYRAG 5 cut(s) 227, 549, 735, 896, 1318
SpeI ACTAGT 1 cut(s) 26
SsiI CCGC 5 cut(s) 14, 48, 67, 764, 1285
SspMI CTAG 3 cut(s) 27, 419, 852
StyI CCWWGG 1 cut(s) 1156
TaaI ACNGT 4 cut(s) 56, 433, 812, 888
TaiI ACGT 1 cut(s) 288
TaqI TCGA 6 cut(s) 128, 349, 582, 736, 843, 1145
TauI GCSGC 4 cut(s) 16, 70, 766, 1288
TfiI GAWTC 3 cut(s) 1052, 1120, 1292
Tru1I TTAA 4 cut(s) 228, 345, 872, 1339
Tru9I TTAA 4 cut(s) 228, 345, 872, 1339
TscAI CASTG 5 cut(s) 24, 570, 891, 962, 1054
TseFI GTSAC 2 cut(s) 56, 603
TseI GCWGC 3 cut(s) 233, 317, 1282
Tsp45I GTSAC 2 cut(s) 56, 603
TspDTI ATGAA 2 cut(s) 362, 393
TspRI CASTG 5 cut(s) 24, 570, 891, 962, 1054
Tth111I GACNNNGTC 2 cut(s) 714, 810
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 628, 749
XceI RCATGY 1 cut(s) 968
XhoI CTCGAG 1 cut(s) 735
XspI CTAG 3 cut(s) 27, 419, 852
ZraI GACGTC 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.