Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007426

Physical Location & Seq

Genomic Coordinates Reverse (-)

63238568 .. 63242407

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG457700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTTTTAATCGAGAGATGGATGCTTTCTCAATTCATAATGAAAGAAAAGGTGTTTCTGGCTCATCTACTCCCCAAGACCTAGCGTGGAATACTGTGGAGGGAATGCCATTGGCCGGAAAAAATATACATGAGTGGCAAGCTGAACTGGATGCTATTGCCAAAGAAGTTGAAGCAGAGCTAATTTCAAAAGACATAGGTTGTCATTTGGCTCAAGTTTTGGAGGCAGTGAATGTGGTTCTTTTTGAGTCAAGAGGCTTCAGAAGGTCACCCGTTCTTGGAGATGCAAAGAATTCATACTTGCACTTAGTTCTAAGCTCTGGAAGTGGAATTGCAATTATGCTTAGCATTATATACATTGAGGTTTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAGGATATCCAGAGGAGCTGTTCAAGGTAACTTCAGGACACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAGGGCATCGGATTTAACAAGCAATTCACTGTCAGGGCTTGAGATAGCTACAAACCGAGACATTATTGGGATTGCTTTGGCCAATCTTGTTAGGCTTCACTGGAAACATGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGGCACGTTTACAATGCTCATGATAAACTTTACAAAATCACTGATTCAAAGGCTCCTCTGTTACGACCCCGAGAACTCAGGTTGGCCATCATGGCTTCAGAAAGATTGTTGATTCTGCAACCACATAATTGGGCTTCGAGGAGAGACCATGGCATGATGTTATACTACAATAGGGAGTACGGGAAGGCTGTCCAAGAGCTTAGCATATGCATGGCTTTTGCCCCAGAAGAAGAGGCAGAAGTTCTTGAACCATTTGTTGAAAAATTACATCTGCTGCGGCGTGAATCATCATGGAAATCTTTAGAGCACTCAAGTCAACTGAAAGTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_9 Transglut_core2

Protein Analysis

334

Amino Acids

37.56

Weight (kDa)

6.71

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transglut_core2	PF13369	45 - 198	7.8e-22	Transglutaminase-like superfamily
TPR_9	PF13371	244 - 301	2.3e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19160 AT4G19160 AT4G19160 AT4G19160
fragaria_vesca	FvH4_2g37180 FvH4_2g37220
prunus_persica	Prupe.1G352900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402301 RchiOBHm_Chr6g0304491
rosa_laevigata	RLG00000006643 RLG00000010972 RLG00000033770 RLG00000034679
rosa_multiflora	Rmu_ssc0000218.1_g000055
rosa_roxburghii	Rroxscaffold_7G00163700
rosa_rugosa	Rorug06G0332200 Rorug06G0332300 Rorug06G0332400
rosa_samantha	Rh4BG074000 Rh5CG116700 Rh6AG445000 Rh6BG457400 Rh6CG457700 Rh6DG444500
rosa_wichuraiana	Rw6G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	428, 949
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	4 cut(s)	114, 425, 600, 756
AcsI	RAATTY	2 cut(s)	292, 413
AcuI	CTGAAG	3 cut(s)	244, 450, 753
AfaI	GTAC	1 cut(s)	851
AfiI	CCNNNNNNNGG	3 cut(s)	116, 278, 434
AgsI	TTSAA	7 cut(s)	173, 189, 457, 636, 720, 920, 932
AluBI	AGCT	6 cut(s)	143, 181, 318, 451, 569, 871
AluI	AGCT	6 cut(s)	143, 181, 318, 451, 569, 871
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	573, 810
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	2 cut(s)	399, 741
AoxI	GGCC	4 cut(s)	114, 425, 600, 756
ApeKI	GCWGC	1 cut(s)	946
ApoI	RAATTY	2 cut(s)	292, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	364, 396
AsuHPI	GGTGA	1 cut(s)	261
AvaI	CYCGRG	2 cut(s)	399, 741
BalI	TGGCCA	2 cut(s)	602, 758
BbsI	GAAGAC	2 cut(s)	379, 516
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	933
BccI	CCATC	2 cut(s)	13, 767
BcoDI	GTCTC	2 cut(s)	573, 810
BfaI	CTAG	2 cut(s)	83, 516
BglI	GCCNNNNNGGC	1 cut(s)	764
BisI	GCNGC	3 cut(s)	428, 947, 950
BlpI	GCTNAGC	2 cut(s)	344, 872
BlsI	GCNGC	3 cut(s)	429, 948, 951
BmeT110I	CYCGRG	2 cut(s)	399, 741
BmiI	GGNNCC	1 cut(s)	726
BmsI	GCATC	5 cut(s)	13, 142, 274, 536, 645
BpiI	GAAGAC	2 cut(s)	379, 516
Bpu1102I	GCTNAGC	2 cut(s)	344, 872
BpuEI	CTTGAG	3 cut(s)	198, 581, 967
BsaI	GGTCTC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 278, 434
Bse1I	ACTGG	2 cut(s)	153, 626
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	2 cut(s)	28, 157
BseLI	CCNNNNNNNGG	3 cut(s)	116, 278, 434
BseMII	CTCAG	2 cut(s)	685, 763
BseNI	ACTGG	2 cut(s)	153, 626
BseRI	GAGGAG	3 cut(s)	461, 717, 826
BseXI	GCAGC	1 cut(s)	933
BshFI	GGCC	4 cut(s)	116, 427, 602, 758
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	2 cut(s)	399, 741
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	3 cut(s)	116, 278, 434
BsmAI	GTCTC	2 cut(s)	573, 810
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	4 cut(s)	116, 427, 602, 758
Bso31I	GGTCTC	1 cut(s)	810
BsoBI	CYCGRG	2 cut(s)	399, 741
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	4 cut(s)	395, 420, 518, 638
Bsp1720I	GCTNAGC	2 cut(s)	344, 872
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	2 cut(s)	428, 949
BspANI	GGCC	4 cut(s)	116, 427, 602, 758
BspCNI	CTCAG	2 cut(s)	684, 762
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	403
BspTNI	GGTCTC	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	153, 626
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	4 cut(s)	395, 420, 518, 638
BssT1I	CCWWGG	1 cut(s)	820
Bst4CI	ACNGT	3 cut(s)	97, 476, 552
Bst6I	CTCTTC	1 cut(s)	897
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	7 cut(s)	307, 314, 344, 377, 671, 749, 872
BstDSI	CCRYGG	1 cut(s)	820
BstEII	GGTNACC	1 cut(s)	267
BstF5I	GGATG	2 cut(s)	28, 157
BstKTI	GATC	4 cut(s)	398, 423, 521, 641
BstMAI	GTCTC	2 cut(s)	573, 810
BstMBI	GATC	4 cut(s)	395, 420, 518, 638
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	632
BstPI	GGTNACC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	933
BstV2I	GAAGAC	2 cut(s)	379, 516
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	4 cut(s)	116, 427, 602, 758
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	2 cut(s)	28, 157
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	4 cut(s)	234, 548, 619, 711
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	850
CviAII	CATG	9 cut(s)	131, 629, 647, 692, 763, 821, 826, 883, 963
CviQI	GTAC	1 cut(s)	850
DdeI	CTNAG	7 cut(s)	307, 314, 344, 377, 671, 749, 872
DpnI	GATC	4 cut(s)	397, 422, 520, 640
DpnII	GATC	4 cut(s)	395, 420, 518, 638
EaeI	YGGCCR	4 cut(s)	114, 425, 600, 756
Eam1104I	CTCTTC	1 cut(s)	897
EarI	CTCTTC	1 cut(s)	897
Eco130I	CCWWGG	1 cut(s)	820
Eco31I	GGTCTC	1 cut(s)	810
Eco32I	GATATC	1 cut(s)	440
Eco57I	CTGAAG	3 cut(s)	244, 450, 753
Eco88I	CYCGRG	2 cut(s)	399, 741
Eco91I	GGTNACC	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	9 cut(s)	134, 632, 650, 695, 766, 824, 829, 886, 966
FatI	CATG	9 cut(s)	130, 628, 646, 691, 762, 820, 825, 882, 962
FauNDI	CATATG	1 cut(s)	878
Fnu4HI	GCNGC	3 cut(s)	428, 947, 950
FokI	GGATG	2 cut(s)	35, 164
Fsp4HI	GCNGC	3 cut(s)	428, 947, 950
FspBI	CTAG	2 cut(s)	83, 516
GluI	GCNGC	3 cut(s)	428, 947, 950
HaeIII	GGCC	4 cut(s)	116, 427, 602, 758
HapII	CCGG	1 cut(s)	117
Hin1II	CATG	9 cut(s)	134, 632, 650, 695, 766, 824, 829, 886, 966
HincII	GTYRAC	1 cut(s)	989
HindII	GTYRAC	1 cut(s)	989
HinfI	GANTC	4 cut(s)	248, 716, 784, 956
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	2 cut(s)	682, 989
Hpy188I	TCNGA	4 cut(s)	263, 384, 532, 772
Hpy188III	TCNNGA	9 cut(s)	14, 252, 321, 399, 443, 468, 636, 692, 917
Hpy8I	GTNNAC	2 cut(s)	682, 989
HpyAV	CCTTC	3 cut(s)	258, 492, 850
HpyCH4III	ACNGT	3 cut(s)	97, 476, 552
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	6 cut(s)	287, 304, 335, 485, 790, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	7 cut(s)	307, 314, 344, 377, 671, 749, 872
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	9 cut(s)	134, 632, 650, 695, 766, 824, 829, 886, 966
Kzo9I	GATC	4 cut(s)	395, 420, 518, 638
LmnI	GCTCC	2 cut(s)	448, 730
Lsp1109I	GCAGC	1 cut(s)	933
LweI	GCATC	5 cut(s)	13, 142, 274, 536, 645
MaeI	CTAG	2 cut(s)	83, 516
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	3 cut(s)	267, 460, 732
MalI	GATC	4 cut(s)	397, 422, 520, 640
MboI	GATC	4 cut(s)	395, 420, 518, 638
MboII	GAAGA	5 cut(s)	384, 422, 521, 911, 914
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	981
MlsI	TGGCCA	2 cut(s)	602, 758
MluNI	TGGCCA	2 cut(s)	602, 758
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	8 cut(s)	94, 217, 248, 355, 439, 738, 804, 898
Mox20I	TGGCCA	2 cut(s)	602, 758
Mph1103I	ATGCAT	1 cut(s)	884
MscI	TGGCCA	2 cut(s)	602, 758
MseI	TTAA	3 cut(s)	9, 536, 1003
MslI	CAYNNNNRTG	1 cut(s)	881
Msp20I	TGGCCA	2 cut(s)	602, 758
MspI	CCGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	764
NcoI	CCATGG	1 cut(s)	820
NdeI	CATATG	1 cut(s)	878
NdeII	GATC	4 cut(s)	395, 420, 518, 638
NlaIII	CATG	9 cut(s)	134, 632, 650, 695, 766, 824, 829, 886, 966
NlaIV	GGNNCC	1 cut(s)	726
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	884
NspI	RCATGY	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	399
PagI	TCATGA	1 cut(s)	691
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	3 cut(s)	716, 784, 956
PflFI	GACNNNGTC	2 cut(s)	378, 474
PkrI	GCNGC	3 cut(s)	429, 948, 951
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	726
PsuI	RGATCY	1 cut(s)	395
PsyI	GACNNNGTC	2 cut(s)	378, 474
RsaI	GTAC	1 cut(s)	851
RsaNI	GTAC	1 cut(s)	850
RseI	CAYNNNNRTG	1 cut(s)	881
SaqAI	TTAA	3 cut(s)	9, 536, 1003
SatI	GCNGC	3 cut(s)	428, 947, 950
Sau3AI	GATC	4 cut(s)	395, 420, 518, 638
SchI	GAGTC	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	5 cut(s)	13, 142, 274, 536, 645
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	881
SmlI	CTYRAG	4 cut(s)	213, 399, 560, 982
SmoI	CTYRAG	4 cut(s)	213, 399, 560, 982
SsiI	CCGC	2 cut(s)	428, 949
SspMI	CTAG	2 cut(s)	83, 516
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	3 cut(s)	97, 476, 552
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	4 cut(s)	13, 400, 507, 809
TauI	GCSGC	2 cut(s)	430, 952
TfiI	GAWTC	3 cut(s)	716, 784, 956
Tru1I	TTAA	3 cut(s)	9, 536, 1003
Tru9I	TTAA	3 cut(s)	9, 536, 1003
TscAI	CASTG	4 cut(s)	234, 555, 626, 718
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	946
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	26, 57, 285
TspRI	CASTG	4 cut(s)	234, 555, 626, 718
Tth111I	GACNNNGTC	2 cut(s)	378, 474
XapI	RAATTY	2 cut(s)	292, 413
XceI	RCATGY	1 cut(s)	632
XhoI	CTCGAG	1 cut(s)	399
XspI	CTAG	2 cut(s)	83, 516
Zsp2I	ATGCAT	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.