Rorug06G0332400
ERF Family

Transglutaminase-like superfamily

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
48526687 .. 48531075
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0332400.1

Sequence Viewer

Length: 2916 bp
ATGGGGGCAAACAAGTATCGAACTTGCGACCTGACTGAAGCTACAACTTTCATTTTGATGGACTCGATTTTAAACTCATCCTTGCAAGAAATCTGCTCGGAAGGTCCAAACGGTCTCCATCTTCAAACCCTCTCCTCCAGGCTCAACCTCTCTCCGCCACTCCAACAACCCCTATGGGCGGCGCTACTCTCCGTCCCCGCCCTCAAATTCCACACCCAAACCCAAACCCAAAACGCCACCGTTTCGCACCTCCGCACCGACCCTTCAATCCAGTCGTTCCGAGACGCCGAGAAGCTCAACCTGAAGCTCGTCGGCGACCAGCCTCTCCGCAACAACTTCCTCGGCCTCTACGACGTCCAGTCCGCATCCGACACCATGTGCGAGTACCAACGCAAAACCCTAGAGCGCGTGGCCGCGGCTGGGTCAAAGGGGATCACGCAGAGTCAACTATCCAAGGAGCTTGGGATTAGAGGTGAGAATTTCTTTTACAAATTGAGGAGGCTCGAATGTCGAGGCTTGATTGTGAAGCAACCATTGAATGATGATCATGATGATGATGCCAATGTGAGTGGGAGTACTAATTTAGTGTACTTAAATCGTTATGCAAAGCATCTAGGTCTAGGGTCTGAACAAAAAGCTGAGGCCACTAAATCTAAGGAGGAAGAGAATATGACTAAGAAGAGTGGTAATTTGATAGCGGAACTTTCAATTGAGCATCAAATTTACGAGCTAGTTAATGATGCGGGGTCAAGGGGGGTCATGGTGTTTAAGGTTGCAGAGAGGCTGGGAATTGATAGGAAAGAGAATAGGAAGAGGATTGAAAGTTTGTGCTCCAAGTTTGGGATGATAATGGATAAAGAGAAATGCGGAAAGACGCAAGTGTATCGAGTTTGGGCACCTGGGAAACGTAATGCTGAATCAGCTAATGCAATTCTGAATGAGTCTGAAAATGTTACTCAAAGTAAATTTAATGAAGATGTTCTTCGTGGGTCCGTTCAGAAAGGTGATACAGCAATAAATGATGTCTCATCAGGAATGCCACCTGCTGCGGAATGTGCTAGGCCCAGAAGGGGAAAAAGTGTACTTGAACCATCACAGGATAAAGGGGATGAACGTCAATCTCTGGGAATTAGAAGCCGTTTGCAGAAAAGAAAGAGATCTTCTGAAGCAGCTTCTGTAAAGTTTATAGAAGTTGATGGCGTAACTGAGCACCGACCTGGACCAAATGAAGATGGTGAGGCGAGGTGTGCTTTTTCAAAGTCAAAATCAACATGTCAAAGAAGGTTTTTATGGACAGAGGAGGCTGATAGGCAATTAGTCATCCAATATGTAAGACGGTGTGCAACTCTTGGGGCAAAATATCATCACCAGATAAATTGGGCTTCACTTCCGGACCTTCCAGCGCCTCCAAGTACCTGCAAAAGAAGAATGTCATATCTGAAGCTCAGTAATGGAAAATTTAGAAACTCTTTAATGACACTGTGTAACATGCTCAGTAAACGGTATGCAAAGCTCCTGGAGAAAACCCAGACCAGGTCATTTTACCAAGATGATTGCGGATCACTTTTGCAAGGTTCAACAGAGGAGGGTTGTAACCAGAATTATCCTCTCAGTGACCGTGGGACAGGTCTTCAGGAAGAACAATGGGATGACTTTAATGACAAAAATATTAAAGAAGTGCTTGATCAGATACTTCACTATGTGAGGTTGACTAAATCTGTTGCCTCCAAAAGATGTGGAGCTTCCCGCGAGGAGGGTTCAGATCTTAATGCTAATGCTGAAGATGTTGGAGGCAGTGATTGTGAACCTTTGTCTCTCTCACCTCAGGTCTTCCCCAATATTTGCAAGTCACCATTTCCAGCTGATTCTGGCAAGAGAGCTGCCAAATTTGCTCATTGGCTCCACAAAAGAGATAGAGATCTTATGGGAAGGGGGCTTGATCTTCCTACAGCTATACAGTGTGGTGAACTTTTTCATTTGTTTGCTCTAGTTTTTTCAGGTGAATTGTCAATCTCCCCATGCTTGCCAGATGGAGTGGGAGAAGCAGAAGATTTGAGAAGCTCAAAACATAAAATTGGTAGGAATAAACATTTGGATGCTAAAAGACTAAAATCCTTGGTTGCAGAAAGTGAGATTATTTCCCGTCGAGAAAAAGGTTTCCCGGGTCTCATGGTATCTGTATGTCGTACAGCATCTTCTACAGCCTATTGTGAAAATTTGTTCAAAGATGATGATACTCTTACCGGTGACAAGCATTGTGGTGAAAATTATCAGCAAGACAGTACTTCAGGTATGAATCAGATTAGAGGAAACCTCAATTCAGGCATTGTTATCCCTGTGGCAGAGACCTGTAGTGAATCAGCTGGCGAAGGTATCCTCCATCCTGGAAATTGTGATATTGGTGGAACTCTTTTGATAGGGAAAAAAAATATGAATGTTAATGATGCACATAATGTGACTATTCTTAATTCTCCTAAAGAGGTTGCTGAGCGTCCGTCTGAAAAACTAACCAGCGGTGTGGAAGGCAAAGTTATCTCACCTAGAGGAGATTTTGATGAATGTTCAAAACTCTCTTCTGGTGAATTATGTGTGCCACTTCTTCCTTGGATAAATGGGGACGAGACCATCAACAAGACTATCTTCATGCAACGTGTTTTTGGGATTGTGATGCAAAACCCCGGGATATTAGAGGGTGAAATTATCCGTAAGATGGATGTACTGAATCCGCAGAGTTGTGGAAAATTGTTGGCGGAGATGATTGAAGCAAAACATCTTCATGTCAGGACAATGCGCCAAGCCACATCCAATGGCCCCCCAGCATTTCTAGGGAACCTATTAGGAAGCAGCCTCACCCAATCAAAGGTGGTTTTCCGTAGGCATCTCTTTGCAAATTCCATGAGCGCGTTCTTGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

971

Amino Acids

107.6

Weight (kDa)

8.44

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_GTF3C1_N PF23704 20 - 117 1.6e-23 General transcription factor 3C polypeptide 1, winged-helix domain
B-block_TFIIIC PF04182 129 - 203 1.1e-13 B-block binding subunit of TFIIIC
DUF7646 PF24657 230 - 306 5.3e-27 Domain of unknown function (DUF7646)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
AatII GACGTC 1 cut(s) 357
Acc36I ACCTGC 2 cut(s) 1051, 1424
AccB1I GGYRCC 1 cut(s) 895
AccII CGCG 4 cut(s) 408, 416, 1749, 2903
AccIII TCCGGA 1 cut(s) 1390
AclWI GGATC 2 cut(s) 440, 1567
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 8 cut(s) 206, 478, 720, 965, 1457, 1886, 2215, 2890
AcuI CTGAAG 7 cut(s) 57, 323, 1185, 1460, 1616, 1800, 2271
AcyI GRCGYC 2 cut(s) 285, 354
AdeI CACNNNGTG 2 cut(s) 378, 1702
AfaI GTAC 8 cut(s) 386, 577, 590, 1083, 1414, 2188, 2284, 2718
AfiI CCNNNNNNNGG 8 cut(s) 178, 420, 840, 1070, 1533, 1753, 2710, 2860
AflIII ACRYGT 2 cut(s) 1271, 2650
AgeI ACCGGT 1 cut(s) 2243
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 6 cut(s) 137, 898, 1216, 1515, 1532, 2383
AjuI GAANNNNNNNTTGG 2 cut(s) 2075, 2107
Alw21I GWGCWC 2 cut(s) 833, 1212
Alw26I GTCTC 7 cut(s) 119, 276, 1030, 1818, 2171, 2339, 2615
AlwI GGATC 2 cut(s) 440, 1567
AlwNI CAGNNNCTG 1 cut(s) 1175
Ama87I CYCGRG 2 cut(s) 2161, 2678
Aor13HI TCCGGA 1 cut(s) 1390
AoxI GGCC 5 cut(s) 343, 411, 642, 1061, 2809
ApeKI GCWGC 4 cut(s) 1046, 1169, 1880, 2844
ApoI RAATTY 8 cut(s) 206, 478, 720, 965, 1457, 1886, 2215, 2890
AsiGI ACCGGT 1 cut(s) 2243
Asp700I GAANNNNTTC 2 cut(s) 978, 1971
AspLEI GCGC 5 cut(s) 184, 408, 1405, 2793, 2903
AspS9I GGNCC 6 cut(s) 104, 990, 1062, 1220, 1393, 2810
AsuC2I CCSGG 4 cut(s) 2162, 2163, 2679, 2680
AvaI CYCGRG 2 cut(s) 2161, 2678
AvaII GGWCC 4 cut(s) 104, 990, 1220, 1393
AxyI CCTNAGG 1 cut(s) 1824
BaeGI GKGCMC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 895
BarI GAAGNNNNNNTAC 2 cut(s) 2179, 2211
BbsI GAAGAC 2 cut(s) 1622, 1822
Bbv12I GWGCWC 2 cut(s) 833, 1212
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 4 cut(s) 1033, 1181, 1867, 2856
BccI CCATC 9 cut(s) 52, 126, 1099, 1190, 1226, 2024, 2388, 2633, 2704
BceAI ACGGC 1 cut(s) 1122
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 6 cut(s) 139, 900, 1218, 1517, 1534, 2385
BciVI GTATCC 1 cut(s) 2384
BclI TGATCA 2 cut(s) 544, 1684
BcnI CCSGG 4 cut(s) 2162, 2163, 2679, 2680
BcoDI GTCTC 7 cut(s) 119, 276, 1030, 1818, 2171, 2339, 2615
BfaI CTAG 8 cut(s) 401, 614, 620, 731, 1059, 1988, 2541, 2825
BfmI CTRYAG 4 cut(s) 1947, 2199, 2350, 2912
BfoI RGCGCY 2 cut(s) 185, 1406
BfuAI ACCTGC 2 cut(s) 1051, 1424
BfuI GTATCC 1 cut(s) 2384
BglII AGATCT 3 cut(s) 1157, 1762, 1918
BisI GCNGC 7 cut(s) 180, 414, 417, 1047, 1170, 1881, 2845
BlpI GCTNAGC 1 cut(s) 2487
BlsI GCNGC 7 cut(s) 181, 415, 418, 1048, 1171, 1882, 2846
BmcAI AGTACT 2 cut(s) 577, 2284
Bme18I GGWCC 4 cut(s) 104, 990, 1220, 1393
BmeRI GACNNNNNGTC 1 cut(s) 358
BmeT110I CYCGRG 2 cut(s) 2161, 2678
BmgT120I GGNCC 6 cut(s) 104, 990, 1062, 1220, 1393, 2810
BmiI GGNNCC 5 cut(s) 897, 991, 1901, 2812, 2831
BpiI GAAGAC 2 cut(s) 1622, 1822
BplI GAGNNNNNCTC 2 cut(s) 2298, 2330
BpmI CTGGAG 2 cut(s) 121, 1538
Bpu10I CCTNAGC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 2487
BpuMI CCSGG 4 cut(s) 2162, 2163, 2679, 2680
BsaBI GATNNNNATC 1 cut(s) 1917
BsaHI GRCGYC 2 cut(s) 285, 354
BsaI GGTCTC 4 cut(s) 119, 2171, 2339, 2615
BsaWI WCCGGW 2 cut(s) 1390, 2243
Bsc4I CCNNNNNNNGG 8 cut(s) 178, 420, 840, 1070, 1533, 1753, 2710, 2860
Bse118I RCCGGY 1 cut(s) 2243
Bse1I ACTGG 2 cut(s) 271, 358
Bse21I CCTNAGG 1 cut(s) 1824
Bse8I GATNNNNATC 1 cut(s) 1917
BseAI TCCGGA 1 cut(s) 1390
BseBI CCWGG 6 cut(s) 139, 900, 1218, 1517, 1534, 2385
BseJI GATNNNNATC 1 cut(s) 1917
BseLI CCNNNNNNNGG 8 cut(s) 178, 420, 840, 1070, 1533, 1753, 2710, 2860
BseMII CTCAG 7 cut(s) 630, 1197, 1459, 1507, 1624, 1838, 2478
BseNI ACTGG 2 cut(s) 271, 358
BseRI GAGGAG 6 cut(s) 124, 511, 1313, 1598, 1766, 2559
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 4 cut(s) 1033, 1181, 1867, 2856
BseYI CCCAGC 3 cut(s) 419, 784, 2815
Bsh1236I CGCG 4 cut(s) 408, 416, 1749, 2903
BshFI GGCC 5 cut(s) 345, 413, 644, 1063, 2811
BshNI GGYRCC 1 cut(s) 895
BshTI ACCGGT 1 cut(s) 2243
BsiHKAI GWGCWC 2 cut(s) 833, 1212
BsiHKCI CYCGRG 2 cut(s) 2161, 2678
BsiSI CCGG 4 cut(s) 1391, 2162, 2244, 2679
BslFI GGGAC 3 cut(s) 179, 1636, 2630
BslI CCNNNNNNNGG 8 cut(s) 178, 420, 840, 1070, 1533, 1753, 2710, 2860
BsmAI GTCTC 7 cut(s) 119, 276, 1030, 1818, 2171, 2339, 2615
BsmBI CGTCTC 1 cut(s) 276
BsmFI GGGAC 3 cut(s) 179, 1636, 2630
BsmI GAATGC 1 cut(s) 1041
BsnI GGCC 5 cut(s) 345, 413, 644, 1063, 2811
Bso31I GGTCTC 4 cut(s) 119, 2171, 2339, 2615
BsoBI CYCGRG 2 cut(s) 2161, 2678
Bsp1286I GDGCHC 3 cut(s) 833, 898, 1212
Bsp13I TCCGGA 1 cut(s) 1390
Bsp143I GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
Bsp1720I GCTNAGC 1 cut(s) 2487
BspANI GGCC 5 cut(s) 345, 413, 644, 1063, 2811
BspCNI CTCAG 7 cut(s) 631, 1198, 1458, 1506, 1623, 1837, 2479
BspEI TCCGGA 1 cut(s) 1390
BspFNI CGCG 4 cut(s) 408, 416, 1749, 2903
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 897, 991, 1901, 2812, 2831
BspMI ACCTGC 2 cut(s) 1051, 1424
BspPI GGATC 2 cut(s) 440, 1567
BspT107I GGYRCC 1 cut(s) 895
BspTNI GGTCTC 4 cut(s) 119, 2171, 2339, 2615
BsrFI RCCGGY 1 cut(s) 2243
BsrI ACTGG 2 cut(s) 271, 358
BssAI RCCGGY 1 cut(s) 2243
BssMI GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
BssNI GRCGYC 2 cut(s) 285, 354
BssT1I CCWWGG 3 cut(s) 453, 2115, 2603
Bst2UI CCWGG 6 cut(s) 139, 900, 1218, 1517, 1534, 2385
Bst4CI ACNGT 8 cut(s) 113, 241, 1338, 1482, 1503, 1619, 1959, 2282
Bst6I CTCTTC 4 cut(s) 657, 674, 806, 2578
BstACI GRCGYC 2 cut(s) 285, 354
BstC8I GCNNGC 2 cut(s) 2024, 2365
BstDEI CTNAG 9 cut(s) 639, 654, 675, 1206, 1445, 1493, 1610, 1824, 2487
BstDSI CCRYGG 2 cut(s) 414, 1618
BstFNI CGCG 4 cut(s) 408, 416, 1749, 2903
BstH2I RGCGCY 2 cut(s) 185, 1406
BstHHI GCGC 5 cut(s) 184, 408, 1405, 2793, 2903
BstKTI GATC 8 cut(s) 435, 547, 1160, 1562, 1687, 1765, 1921, 1942
BstMAI GTCTC 7 cut(s) 119, 276, 1030, 1818, 2171, 2339, 2615
BstMBI GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
BstMWI GCNNNNNNNGC 4 cut(s) 920, 1055, 1247, 1889
BstNI CCWGG 6 cut(s) 139, 900, 1218, 1517, 1534, 2385
BstNSI RCATGY 2 cut(s) 1275, 1492
BstSFI CTRYAG 4 cut(s) 1947, 2199, 2350, 2912
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 4 cut(s) 408, 416, 1749, 2903
BstV1I GCAGC 4 cut(s) 1033, 1181, 1867, 2856
BstV2I GAAGAC 2 cut(s) 1622, 1822
BstX2I RGATCY 3 cut(s) 1157, 1762, 1918
BstXI CCANNNNNNTGG 1 cut(s) 2518
BstYI RGATCY 3 cut(s) 1157, 1762, 1918
Bsu36I CCTNAGG 1 cut(s) 1824
BsuI GTATCC 1 cut(s) 2384
BsuRI GGCC 5 cut(s) 345, 413, 644, 1063, 2811
BtgI CCRYGG 2 cut(s) 414, 1618
BtsI GCAGTG 1 cut(s) 1801
BtsIMutI CAGTG 4 cut(s) 1478, 1618, 1801, 1964
BveI ACCTGC 2 cut(s) 1051, 1424
Cac8I GCNNGC 2 cut(s) 2024, 2365
CaiI CAGNNNCTG 1 cut(s) 1175
CciI TCATGA 1 cut(s) 547
CfoI GCGC 5 cut(s) 184, 408, 1405, 2793, 2903
Cfr10I RCCGGY 1 cut(s) 2243
Cfr13I GGNCC 6 cut(s) 104, 990, 1062, 1220, 1393, 2810
Cfr42I CCGCGG 1 cut(s) 417
Cfr9I CCCGGG 2 cut(s) 2161, 2678
CseI GACGC 3 cut(s) 293, 883, 2480
CsiI ACCWGGT 1 cut(s) 1532
Csp6I GTAC 8 cut(s) 385, 576, 589, 1082, 1413, 2187, 2283, 2717
CspAI ACCGGT 1 cut(s) 2243
CspCI CAANNNNNGTGG 6 cut(s) 550, 585, 1717, 1752, 2239, 2274
CviQI GTAC 8 cut(s) 385, 576, 589, 1082, 1413, 2187, 2283, 2717
DdeI CTNAG 9 cut(s) 639, 654, 675, 1206, 1445, 1493, 1610, 1824, 2487
DpnI GATC 8 cut(s) 434, 546, 1159, 1561, 1686, 1764, 1920, 1941
DpnII GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
DraI TTTAAA 1 cut(s) 72
DraIII CACNNNGTG 2 cut(s) 378, 1702
DriI GACNNNNNGTC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 4 cut(s) 657, 674, 806, 2578
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 4 cut(s) 657, 674, 806, 2578
EciI GGCGGA 2 cut(s) 144, 2765
Eco130I CCWWGG 3 cut(s) 453, 2115, 2603
Eco31I GGTCTC 4 cut(s) 119, 2171, 2339, 2615
Eco47I GGWCC 4 cut(s) 104, 990, 1220, 1393
Eco57I CTGAAG 7 cut(s) 57, 323, 1185, 1460, 1616, 1800, 2271
Eco81I CCTNAGG 1 cut(s) 1824
Eco88I CYCGRG 2 cut(s) 2161, 2678
EcoRII CCWGG 6 cut(s) 137, 898, 1216, 1515, 1532, 2383
EcoT14I CCWWGG 3 cut(s) 453, 2115, 2603
ErhI CCWWGG 3 cut(s) 453, 2115, 2603
Esp3I CGTCTC 1 cut(s) 276
FalI AAGNNNNNCTT 6 cut(s) 966, 998, 1665, 1697, 2624, 2656
FaqI GGGAC 3 cut(s) 179, 1636, 2630
FauI CCCGC 3 cut(s) 205, 736, 1754
FbaI TGATCA 2 cut(s) 544, 1684
Fnu4HI GCNGC 7 cut(s) 180, 414, 417, 1047, 1170, 1881, 2845
Fsp4HI GCNGC 7 cut(s) 180, 414, 417, 1047, 1170, 1881, 2845
FspBI CTAG 8 cut(s) 401, 614, 620, 731, 1059, 1988, 2541, 2825
GlaI GCGC 5 cut(s) 183, 407, 1404, 2792, 2902
GluI GCNGC 7 cut(s) 180, 414, 417, 1047, 1170, 1881, 2845
GsaI CCCAGC 3 cut(s) 423, 788, 2819
GsuI CTGGAG 2 cut(s) 121, 1538
HaeII RGCGCY 2 cut(s) 185, 1406
HaeIII GGCC 5 cut(s) 345, 413, 644, 1063, 2811
HapII CCGG 4 cut(s) 1391, 2162, 2244, 2679
HgaI GACGC 3 cut(s) 293, 883, 2480
HhaI GCGC 5 cut(s) 184, 408, 1405, 2793, 2903
Hin1I GRCGYC 2 cut(s) 285, 354
Hin6I GCGC 5 cut(s) 182, 406, 1403, 2791, 2901
HinP1I GCGC 5 cut(s) 182, 406, 1403, 2791, 2901
HincII GTYRAC 2 cut(s) 446, 1710
HindII GTYRAC 2 cut(s) 446, 1710
HinfI GANTC 8 cut(s) 62, 442, 917, 941, 1865, 2296, 2357, 2722
HpaII CCGG 4 cut(s) 1391, 2162, 2244, 2679
Hpy166II GTNNAC 7 cut(s) 446, 589, 1082, 1499, 1710, 1805, 1967
Hpy188III TCNNGA 6 cut(s) 548, 1032, 1391, 1634, 2147, 2782
Hpy8I GTNNAC 7 cut(s) 446, 589, 1082, 1499, 1710, 1805, 1967
Hpy99I CGWCG 3 cut(s) 314, 356, 2148
HpyAV CCTTC 8 cut(s) 95, 273, 1062, 1275, 1406, 1923, 2363, 2516
HpyCH4III ACNGT 8 cut(s) 113, 241, 1338, 1482, 1503, 1619, 1959, 2282
HpyCH4IV ACGT 4 cut(s) 354, 907, 1114, 2650
HpyF10VI GCNNNNNNNGC 4 cut(s) 920, 1055, 1247, 1889
HpyF3I CTNAG 9 cut(s) 639, 654, 675, 1206, 1445, 1493, 1610, 1824, 2487
HpySE526I ACGT 4 cut(s) 354, 907, 1114, 2650
Hsp92I GRCGYC 2 cut(s) 285, 354
HspAI GCGC 5 cut(s) 182, 406, 1403, 2791, 2901
Kpn2I TCCGGA 1 cut(s) 1390
Ksp22I TGATCA 2 cut(s) 544, 1684
KspI CCGCGG 1 cut(s) 417
Kzo9I GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
LmnI GCTCC 5 cut(s) 457, 836, 1518, 1739, 1905
Lsp1109I GCAGC 4 cut(s) 1033, 1181, 1867, 2856
MabI ACCWGGT 1 cut(s) 1532
MaeI CTAG 8 cut(s) 401, 614, 620, 731, 1059, 1988, 2541, 2825
MaeII ACGT 4 cut(s) 354, 907, 1114, 2650
MaeIII GTNAC 8 cut(s) 952, 1201, 1484, 1592, 1613, 1848, 2246, 2455
MalI GATC 8 cut(s) 434, 546, 1159, 1561, 1686, 1764, 1920, 1941
MboI GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 3 cut(s) 1157, 1762, 1918
MhlI GDGCHC 3 cut(s) 833, 898, 1212
MlyI GAGTC 3 cut(s) 56, 451, 950
MmeI TCCRAC 3 cut(s) 187, 393, 1768
MroI TCCGGA 1 cut(s) 1390
MroXI GAANNNNTTC 2 cut(s) 978, 1971
MslI CAYNNNNRTG 5 cut(s) 56, 552, 2094, 2259, 2775
MspA1I CMGCKG 4 cut(s) 416, 1862, 2363, 2514
MspI CCGG 4 cut(s) 1391, 2162, 2244, 2679
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 1041
MvaI CCWGG 6 cut(s) 139, 900, 1218, 1517, 1534, 2385
MvnI CGCG 4 cut(s) 408, 416, 1749, 2903
MwoI GCNNNNNNNGC 4 cut(s) 920, 1055, 1247, 1889
NciI CCSGG 4 cut(s) 2162, 2163, 2679, 2680
NdeII GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
NlaIV GGNNCC 5 cut(s) 897, 991, 1901, 2812, 2831
NmeAIII GCCGAG 2 cut(s) 313, 321
NmuCI GTSAC 4 cut(s) 1613, 1848, 2246, 2455
NspI RCATGY 2 cut(s) 1275, 1492
PagI TCATGA 1 cut(s) 547
PaqCI CACCTGC 1 cut(s) 1051
PciI ACATGT 1 cut(s) 1271
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PctI GAATGC 1 cut(s) 1041
PdmI GAANNNNTTC 2 cut(s) 978, 1971
PfeI GAWTC 5 cut(s) 917, 1865, 2296, 2357, 2722
PflFI GACNNNGTC 1 cut(s) 1534
PfoI TCCNGGA 2 cut(s) 1515, 2383
PinAI ACCGGT 1 cut(s) 2243
PkrI GCNGC 7 cut(s) 181, 415, 418, 1048, 1171, 1882, 2846
PleI GAGTC 3 cut(s) 56, 450, 949
PpsI GAGTC 3 cut(s) 56, 450, 949
PscI ACATGT 1 cut(s) 1271
Psp6I CCWGG 6 cut(s) 137, 898, 1216, 1515, 1532, 2383
PspFI CCCAGC 3 cut(s) 419, 784, 2815
PspGI CCWGG 6 cut(s) 137, 898, 1216, 1515, 1532, 2383
PspN4I GGNNCC 5 cut(s) 897, 991, 1901, 2812, 2831
PspPI GGNCC 6 cut(s) 104, 990, 1062, 1220, 1393, 2810
PstNI CAGNNNCTG 1 cut(s) 1175
PsuI RGATCY 3 cut(s) 1157, 1762, 1918
PsyI GACNNNGTC 1 cut(s) 1534
PvuII CAGCTG 2 cut(s) 1862, 2363
RsaI GTAC 8 cut(s) 386, 577, 590, 1083, 1414, 2188, 2284, 2718
RsaNI GTAC 8 cut(s) 385, 576, 589, 1082, 1413, 2187, 2283, 2717
RseI CAYNNNNRTG 5 cut(s) 56, 552, 2094, 2259, 2775
SacII CCGCGG 1 cut(s) 417
SatI GCNGC 7 cut(s) 180, 414, 417, 1047, 1170, 1881, 2845
Sau3AI GATC 8 cut(s) 432, 544, 1157, 1559, 1684, 1762, 1918, 1939
Sau96I GGNCC 6 cut(s) 104, 990, 1062, 1220, 1393, 2810
ScaI AGTACT 2 cut(s) 577, 2284
SchI GAGTC 3 cut(s) 56, 451, 950
SduI GDGCHC 3 cut(s) 833, 898, 1212
SexAI ACCWGGT 1 cut(s) 1532
SfcI CTRYAG 4 cut(s) 1947, 2199, 2350, 2912
Sfr303I CCGCGG 1 cut(s) 417
SgrBI CCGCGG 1 cut(s) 417
SinI GGWCC 4 cut(s) 104, 990, 1220, 1393
SmaI CCCGGG 2 cut(s) 2163, 2680
SmiMI CAYNNNNRTG 5 cut(s) 56, 552, 2094, 2259, 2775
SspI AATATT 2 cut(s) 1669, 1840
SspMI CTAG 8 cut(s) 401, 614, 620, 731, 1059, 1988, 2541, 2825
StyI CCWWGG 3 cut(s) 453, 2115, 2603
TaaI ACNGT 8 cut(s) 113, 241, 1338, 1482, 1503, 1619, 1959, 2282
TaiI ACGT 4 cut(s) 357, 910, 1117, 2653
TaqI TCGA 6 cut(s) 19, 65, 504, 511, 886, 2146
TatI WGTACW 5 cut(s) 575, 588, 1081, 2282, 2716
TauI GCSGC 3 cut(s) 182, 416, 419
TfiI GAWTC 5 cut(s) 917, 1865, 2296, 2357, 2722
TscAI CASTG 4 cut(s) 1485, 1618, 1801, 1964
TseFI GTSAC 4 cut(s) 1613, 1848, 2246, 2455
TseI GCWGC 4 cut(s) 1046, 1169, 1880, 2844
Tsp45I GTSAC 4 cut(s) 1613, 1848, 2246, 2455
TspGWI ACGGA 5 cut(s) 181, 982, 2484, 2693, 2861
TspMI CCCGGG 2 cut(s) 2161, 2678
TspRI CASTG 4 cut(s) 1485, 1618, 1801, 1964
Tth111I GACNNNGTC 1 cut(s) 1534
VpaK11BI GGWCC 4 cut(s) 104, 990, 1220, 1393
XapI RAATTY 8 cut(s) 206, 478, 720, 965, 1457, 1886, 2215, 2890
XceI RCATGY 2 cut(s) 1275, 1492
XcmI CCANNNNNNNNNTGG 1 cut(s) 2601
XmaI CCCGGG 2 cut(s) 2161, 2678
XmnI GAANNNNTTC 2 cut(s) 978, 1971
XspI CTAG 8 cut(s) 401, 614, 620, 731, 1059, 1988, 2541, 2825
ZraI GACGTC 1 cut(s) 355
ZrmI AGTACT 2 cut(s) 577, 2284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.