RLG00000033770
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007426
Physical Location & Seq
Forward (+)
31935713 .. 31937628
1916 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033770

Sequence Viewer

Length: 549 bp
ATGGAGTCGTACCATGTGGGTCTCCGGCTCGCAGATCTGGAACTCATACTAGGATGGCCGCCGGAAAACCCTAGCGCAATTATGCTTAGCGTTATATACATTGAGGTTTGTCGAAGACTTAGTCTGACCATAATGGGATCTGGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAGGATATCCAGAGGAGCTGTTCAAGGTAATTTCAGGACACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAAGGCATCGGATTTAACAAGCAATTCACTGTCAGGGCTTGAGATAGCTACAAACCGAGACATTATTGGGATTGCTTTGGCCAATCTTGTTAGGCTTCACTGGAAACTTGCTTCAAGATCAACTCATGGACTGATGCTAACTTCTCCACTCAGGCATGTTCACAATGCTCATGATAAACTTTACAAAATCACTGATTCAAAGGCTCCTCTATTACGACCCCAAGAACTTAGCTTGACATACATGACTAGCCAGTTCCCGTTGGTTTTGATATTAGAAATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

6.37

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 26 - 112 3.8e-08 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 170
AclWI GGATC 1 cut(s) 145
AcoI YGGCCR 3 cut(s) 56, 167, 342
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 3 cut(s) 199, 378, 462
AluBI AGCT 3 cut(s) 193, 311, 495
AluI AGCT 3 cut(s) 193, 311, 495
Alw26I GTCTC 2 cut(s) 26, 315
AlwI GGATC 1 cut(s) 145
AoxI GGCC 3 cut(s) 56, 167, 342
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspLEI GCGC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 344
BbsI GAAGAC 2 cut(s) 121, 258
BccI CCATC 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 26, 315
BfaI CTAG 4 cut(s) 50, 72, 258, 510
BglII AGATCT 1 cut(s) 34
BisI GCNGC 2 cut(s) 59, 170
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 2 cut(s) 60, 171
BmiI GGNNCC 1 cut(s) 468
BmsI GCATC 2 cut(s) 278, 387
BpiI GAAGAC 2 cut(s) 121, 258
BpmI CTGGAG 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 368, 514
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 368, 514
BseRI GAGGAG 2 cut(s) 203, 459
BshFI GGCC 3 cut(s) 58, 169, 344
BsiSI CCGG 2 cut(s) 25, 62
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 26, 315
BsnI GGCC 3 cut(s) 58, 169, 344
Bso31I GGTCTC 1 cut(s) 26
Bsp143I GATC 5 cut(s) 34, 137, 162, 260, 380
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 2 cut(s) 59, 170
BspANI GGCC 3 cut(s) 58, 169, 344
BspCNI CTCAG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 468
BspPI GGATC 1 cut(s) 145
BspTNI GGTCTC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 368, 514
BssMI GATC 5 cut(s) 34, 137, 162, 260, 380
Bst4CI ACNGT 2 cut(s) 218, 294
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 4 cut(s) 86, 119, 413, 491
BstF5I GGATG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 5 cut(s) 37, 140, 165, 263, 383
BstMAI GTCTC 2 cut(s) 26, 315
BstMBI GATC 5 cut(s) 34, 137, 162, 260, 380
BstNSI RCATGY 1 cut(s) 422
BstV2I GAAGAC 2 cut(s) 121, 258
BstX2I RGATCY 2 cut(s) 34, 137
BstYI RGATCY 2 cut(s) 34, 137
BsuRI GGCC 3 cut(s) 58, 169, 344
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 3 cut(s) 290, 361, 453
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 10
CviAII CATG 5 cut(s) 14, 389, 419, 434, 505
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 4 cut(s) 86, 119, 413, 491
DpnI GATC 5 cut(s) 36, 139, 164, 262, 382
DpnII GATC 5 cut(s) 34, 137, 162, 260, 380
EaeI YGGCCR 3 cut(s) 56, 167, 342
Eco31I GGTCTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 182
FaeI CATG 5 cut(s) 17, 392, 422, 437, 508
FatI CATG 5 cut(s) 13, 388, 418, 433, 504
Fnu4HI GCNGC 2 cut(s) 59, 170
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 59, 170
FspBI CTAG 4 cut(s) 50, 72, 258, 510
GlaI GCGC 1 cut(s) 76
GluI GCNGC 2 cut(s) 59, 170
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 58, 169, 344
HapII CCGG 2 cut(s) 25, 62
HhaI GCGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 17, 392, 422, 437, 508
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 2 cut(s) 5, 458
HpaII CCGG 2 cut(s) 25, 62
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 126, 274
Hpy188III TCNNGA 6 cut(s) 38, 141, 185, 210, 378, 434
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 2 cut(s) 218, 294
HpyCH4V TGCA 1 cut(s) 227
HpyF3I CTNAG 4 cut(s) 86, 119, 413, 491
Hsp92II CATG 5 cut(s) 17, 392, 422, 437, 508
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 5 cut(s) 34, 137, 162, 260, 380
LmnI GCTCC 2 cut(s) 190, 472
LweI GCATC 2 cut(s) 278, 387
MaeI CTAG 4 cut(s) 50, 72, 258, 510
MalI GATC 5 cut(s) 36, 139, 164, 262, 382
MboI GATC 5 cut(s) 34, 137, 162, 260, 380
MboII GAAGA 3 cut(s) 126, 164, 263
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 34, 137
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 5 cut(s) 78, 155, 204, 228, 286
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 3 cut(s) 97, 181, 480
Mox20I TGGCCA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 344
MseI TTAA 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 2 cut(s) 25, 62
MunI CAATTG 1 cut(s) 228
NdeII GATC 5 cut(s) 34, 137, 162, 260, 380
NlaIII CATG 5 cut(s) 17, 392, 422, 437, 508
NlaIV GGNNCC 1 cut(s) 468
NspI RCATGY 1 cut(s) 422
PagI TCATGA 1 cut(s) 433
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 2 cut(s) 120, 216
PkrI GCNGC 2 cut(s) 60, 171
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 468
PsuI RGATCY 2 cut(s) 34, 137
PsyI GACNNNGTC 2 cut(s) 120, 216
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 59, 170
Sau3AI GATC 5 cut(s) 34, 137, 162, 260, 380
SchI GAGTC 1 cut(s) 14
SetI ASST 6 cut(s) 108, 195, 204, 245, 313, 497
SfaNI GCATC 2 cut(s) 278, 387
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 5 cut(s) 78, 155, 204, 228, 286
SsiI CCGC 2 cut(s) 59, 170
SspMI CTAG 4 cut(s) 50, 72, 258, 510
TaaI ACNGT 2 cut(s) 218, 294
TaqI TCGA 2 cut(s) 112, 249
TasI AATT 5 cut(s) 78, 155, 204, 228, 286
TauI GCSGC 2 cut(s) 61, 172
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 3 cut(s) 297, 368, 460
TspRI CASTG 3 cut(s) 297, 368, 460
Tth111I GACNNNGTC 2 cut(s) 120, 216
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 422
XspI CTAG 4 cut(s) 50, 72, 258, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.