Rh4BG074000
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007426
Physical Location & Seq
Reverse (-)
13058686 .. 13059801
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG074000.1

Sequence Viewer

Length: 417 bp
ATGCTTAGCATTATATACATTGAGGTTTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAAGATATCCAGAGGAGCTGTTCAAAGCAACTTCAGGACACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCAAAGACCCTAGATCAAAGGCATCGGATTTAACAAGCAATTCACTGTCAGGGCTTGAGATAGTTACAAACCGAGACATTATTGGGATTGCTTTGGCCAATCTTGTTAGGCTTCATTGGAAACTTGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCACGCATGTTCACAATGCTCATGATAAACTTTACAAAATCACTGATTCAAAGGCTCCTCTGTTACGACCCCAAGAACTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

138

Amino Acids

15.51

Weight (kDa)

9.69

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 1 - 85 1.9e-07 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 2 cut(s) 86, 261
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 111
AgsI TTSAA 3 cut(s) 118, 297, 381
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 2 cut(s) 86, 261
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AvaI CYCGRG 1 cut(s) 60
BalI TGGCCA 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 2 cut(s) 197, 306
BpiI GAAGAC 1 cut(s) 40
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 242
BseRI GAGGAG 2 cut(s) 122, 378
BshFI GGCC 2 cut(s) 88, 263
BsiHKCI CYCGRG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 2 cut(s) 88, 263
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 4 cut(s) 56, 81, 179, 299
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 88, 263
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 387
BspPI GGATC 1 cut(s) 64
BssMI GATC 4 cut(s) 56, 81, 179, 299
Bst4CI ACNGT 2 cut(s) 137, 213
BstDEI CTNAG 3 cut(s) 5, 38, 410
BstKTI GATC 4 cut(s) 59, 84, 182, 302
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 4 cut(s) 56, 81, 179, 299
BstNSI RCATGY 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 2 cut(s) 88, 263
BtsIMutI CAGTG 2 cut(s) 209, 372
CciI TCATGA 1 cut(s) 352
CviAII CATG 3 cut(s) 308, 338, 353
CviJI RGCY 6 cut(s) 88, 112, 220, 263, 277, 386
CviKI_1 RGCY 6 cut(s) 88, 112, 220, 263, 277, 386
DdeI CTNAG 3 cut(s) 5, 38, 410
DpnI GATC 4 cut(s) 58, 83, 181, 301
DpnII GATC 4 cut(s) 56, 81, 179, 299
EaeI YGGCCR 2 cut(s) 86, 261
Eco32I GATATC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 60
EcoRV GATATC 1 cut(s) 101
FaeI CATG 3 cut(s) 311, 341, 356
FaiI YATR 6 cut(s) 14, 16, 50, 309, 339, 354
FatI CATG 3 cut(s) 307, 337, 352
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 88, 263
Hin1II CATG 3 cut(s) 311, 341, 356
HinfI GANTC 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 45, 193
Hpy188III TCNNGA 5 cut(s) 60, 104, 129, 297, 353
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 137, 213
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 3 cut(s) 5, 38, 410
Hsp92II CATG 3 cut(s) 311, 341, 356
Kzo9I GATC 4 cut(s) 56, 81, 179, 299
LmnI GCTCC 2 cut(s) 109, 391
LpnPI CCDG 4 cut(s) 70, 114, 117, 201
LweI GCATC 2 cut(s) 197, 306
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 229, 393
MalI GATC 4 cut(s) 58, 83, 181, 301
MboI GATC 4 cut(s) 56, 81, 179, 299
MboII GAAGA 2 cut(s) 45, 83
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 74, 147, 205
MluNI TGGCCA 1 cut(s) 263
MnlI CCTC 3 cut(s) 16, 100, 399
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 197
Msp20I TGGCCA 1 cut(s) 263
MunI CAATTG 1 cut(s) 147
NdeII GATC 4 cut(s) 56, 81, 179, 299
NlaIII CATG 3 cut(s) 311, 341, 356
NlaIV GGNNCC 1 cut(s) 387
NspI RCATGY 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 352
PfeI GAWTC 1 cut(s) 377
PflFI GACNNNGTC 2 cut(s) 39, 135
PkrI GCNGC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 387
PsuI RGATCY 1 cut(s) 56
PsyI GACNNNGTC 2 cut(s) 39, 135
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 4 cut(s) 56, 81, 179, 299
SetI ASST 4 cut(s) 27, 114, 164, 416
SfaNI GCATC 2 cut(s) 197, 306
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 60, 221
SmoI CTYRAG 2 cut(s) 60, 221
Sse9I AATT 3 cut(s) 74, 147, 205
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 137, 213
TaqI TCGA 1 cut(s) 61
TasI AATT 3 cut(s) 74, 147, 205
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 2 cut(s) 216, 379
TspDTI ATGAA 1 cut(s) 269
TspRI CASTG 2 cut(s) 216, 379
Tth111I GACNNNGTC 2 cut(s) 39, 135
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 341
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.