Rw6G038630
ERF Family

Transglutaminase-like superfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
62695950 .. 62698990
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G038630.1

Sequence Viewer

Length: 1344 bp
ATGGCGTGTCTGCCGCCACTGATGACTAGTTCAACTGCCATCTGCTCCGCTGACTGTGACGATCGGCGGCCGTACCGGTCCCTGAGGTATGATCGTTGGAATGGTTGTGATGAGAAGAACACGAAATCGACAGGAAGCAAGTACCAGAGGAGGAGGAGGAGGAGCCTTGTTCTTGGCTCTGCTTCTTCTGCTTCTGCTTCCCCTCGTTCCCATATTTATCAGCAGGTTCTTAAGGCTGCCAGACAAAAGTTTACTCAGGAGATCTCCTTCCAGTCTAAAGACAAGGACGTCTCTCTTGCAAAGGCTTTGCTCTACATAGCAGCTGAAGATGAGGCATTTATGGCTTTTAATCGAGAGATGGATGCTTTCTCAATTCATAATGAAAGAAAAGGTGTTTCTGGCTCATCTACTCCCCAAGACCTAGTGTGGAATACTGTGGAGGGAATGCCATTGGCCGGAAAAAATATACACGAGTGGCAAGCTGAACTGGATGCTATTGCCAAAGAAGTTGAAGCAGAGCTAATTTCAAAAGACATAGGTTGTCATTTGGCTCAAGTTTTGGAGGCAGTGAATGTGGTTCTTTTCGAGTCAAGAGGCTTCAGAAGGTCACCCCTTCTTGGAGATGCAAAGAATTCATACTTGCACTTAGTTCTAAGCTCTGGATGTGGAATTGCAATTATGCTTAGCATTATATACATTGAGGTTTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACTGGATATCCAGAGGAGCTGTTCAAGGTAACGTCAGGACACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAAGGCATCGGATTTAACAAGCAATTCACTGTCAGGGCTTGAGATAGCTACAAACCGAGACATTATTGGGATTGCTTTAGCCAATCTTGTTAGGCTTCACTGGAAACATGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGGCACGTTCACAATGCTCATGATAAACTTTACAAAATCACTGATTCAAAGGCTCCTCTGTTACGACCCCGAGAACTCAGGTTGGCCATCATGGCTTCAGAAAGATTGTTGATTCTGCAACCACATAATTGGGCTTCGAGGAGAGACCATGGCATGATGTTATACTACAATAGGGAGTACGGGAAGGCTGTCCAAGAGCTTAGCATATGCATGGCTTTTGCCCCAGAAGAAGAGGCAGAAGTTCTTGAACCATTTGTTGAAAAATTACATCTGCTGCGGCTTGAATCATCATGGAAATCTTTAGAGCACTCAAGTCAACTGAAAGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

50.26

Weight (kDa)

8.62

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 158 - 311 4e-21 Transglutaminase-like superfamily
TPR_9 PF13371 357 - 414 3.6e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 5 cut(s) 14, 48, 67, 767, 1288
AclWI GGATC 1 cut(s) 742
AcoI YGGCCR 4 cut(s) 68, 453, 764, 1095
AcsI RAATTY 2 cut(s) 631, 752
AcuI CTGAAG 3 cut(s) 345, 583, 1092
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 3 cut(s) 74, 143, 1190
AfiI CCNNNNNNNGG 3 cut(s) 455, 617, 773
AflII CTTAAG 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 9 cut(s) 33, 512, 528, 796, 975, 1059, 1259, 1271, 1295
AhlI ACTAGT 1 cut(s) 26
AluBI AGCT 7 cut(s) 323, 482, 520, 657, 790, 908, 1210
AluI AGCT 7 cut(s) 323, 482, 520, 657, 790, 908, 1210
Alw21I GWGCWC 1 cut(s) 1320
Alw26I GTCTC 3 cut(s) 295, 912, 1149
AlwI GGATC 1 cut(s) 742
Ama87I CYCGRG 2 cut(s) 738, 1080
AoxI GGCC 4 cut(s) 68, 453, 764, 1095
ApeKI GCWGC 3 cut(s) 236, 320, 1285
ApoI RAATTY 2 cut(s) 631, 752
ArsI GACNNNNNNTTYG 2 cut(s) 703, 735
AsiGI ACCGGT 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 600
AvaI CYCGRG 2 cut(s) 738, 1080
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 83
BalI TGGCCA 1 cut(s) 1097
BauI CACGAG 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 718, 855
Bbv12I GWGCWC 1 cut(s) 1320
BbvI GCAGC 3 cut(s) 223, 332, 1272
BccI CCATC 3 cut(s) 47, 352, 1106
BceAI ACGGC 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 295, 912, 1149
BcuI ACTAGT 1 cut(s) 26
BfaI CTAG 3 cut(s) 27, 422, 855
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 1103
BglII AGATCT 1 cut(s) 261
BisI GCNGC 7 cut(s) 14, 68, 237, 321, 767, 1286, 1289
BlpI GCTNAGC 2 cut(s) 683, 1211
BlsI GCNGC 7 cut(s) 15, 69, 238, 322, 768, 1287, 1290
Bme18I GGWCC 1 cut(s) 78
BmeT110I CYCGRG 2 cut(s) 738, 1080
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 3 cut(s) 80, 164, 1065
BmsI GCATC 5 cut(s) 352, 481, 613, 875, 984
BpiI GAAGAC 2 cut(s) 718, 855
Bpu1102I GCTNAGC 2 cut(s) 683, 1211
BpuEI CTTGAG 3 cut(s) 537, 920, 1306
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 1149
BsaJI CCNNGG 1 cut(s) 1159
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 455, 617, 773
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 4 cut(s) 271, 492, 778, 965
Bse21I CCTNAGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 1159
BseGI GGATG 3 cut(s) 367, 496, 668
BseLI CCNNNNNNNGG 3 cut(s) 455, 617, 773
BseMII CTCAG 4 cut(s) 74, 269, 1024, 1102
BseNI ACTGG 4 cut(s) 271, 492, 778, 965
BseRI GAGGAG 8 cut(s) 163, 166, 169, 172, 175, 800, 1056, 1165
BseX3I CGGCCG 1 cut(s) 68
BseXI GCAGC 3 cut(s) 223, 332, 1272
Bsh1285I CGRYCG 2 cut(s) 64, 71
BshFI GGCC 4 cut(s) 70, 455, 766, 1097
BshTI ACCGGT 1 cut(s) 75
BsiEI CGRYCG 2 cut(s) 64, 71
BsiHKAI GWGCWC 1 cut(s) 1320
BsiHKCI CYCGRG 2 cut(s) 738, 1080
BsiSI CCGG 2 cut(s) 76, 456
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 455, 617, 773
BsmAI GTCTC 3 cut(s) 295, 912, 1149
BsmBI CGTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 450
BsnI GGCC 4 cut(s) 70, 455, 766, 1097
Bso31I GGTCTC 1 cut(s) 1149
BsoBI CYCGRG 2 cut(s) 738, 1080
Bsp1286I GDGCHC 1 cut(s) 1320
Bsp143I GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
Bsp1720I GCTNAGC 2 cut(s) 683, 1211
Bsp19I CCATGG 1 cut(s) 1159
BspACI CCGC 5 cut(s) 14, 48, 67, 767, 1288
BspANI GGCC 4 cut(s) 70, 455, 766, 1097
BspCNI CTCAG 4 cut(s) 75, 268, 1023, 1101
BspHI TCATGA 1 cut(s) 1030
BspLI GGNNCC 3 cut(s) 80, 164, 1065
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 742
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 1149
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 4 cut(s) 271, 492, 778, 965
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 1159
BssMI GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 1159
Bst2BI CACGAG 1 cut(s) 470
Bst4CI ACNGT 4 cut(s) 56, 436, 815, 891
Bst6I CTCTTC 1 cut(s) 1236
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 9 cut(s) 83, 255, 646, 653, 683, 716, 1010, 1088, 1211
BstDSI CCRYGG 1 cut(s) 1159
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 3 cut(s) 367, 496, 668
BstKTI GATC 7 cut(s) 64, 94, 264, 737, 762, 860, 980
BstMAI GTCTC 3 cut(s) 295, 912, 1149
BstMBI GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
BstMCI CGRYCG 2 cut(s) 64, 71
BstMWI GCNNNNNNNGC 3 cut(s) 188, 341, 1103
BstNSI RCATGY 1 cut(s) 971
BstPI GGTNACC 1 cut(s) 606
BstV1I GCAGC 3 cut(s) 223, 332, 1272
BstV2I GAAGAC 2 cut(s) 718, 855
BstX2I RGATCY 2 cut(s) 261, 734
BstXI CCANNNNNNTGG 1 cut(s) 1140
BstYI RGATCY 2 cut(s) 261, 734
BstZI CGGCCG 1 cut(s) 68
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 4 cut(s) 70, 455, 766, 1097
BtgI CCRYGG 1 cut(s) 1159
BtsCI GGATG 3 cut(s) 367, 496, 668
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 5 cut(s) 17, 573, 887, 958, 1050
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 480
CciI TCATGA 1 cut(s) 1030
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 3 cut(s) 73, 142, 1189
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 8 cut(s) 968, 986, 1031, 1102, 1160, 1165, 1222, 1302
CviQI GTAC 3 cut(s) 73, 142, 1189
DdeI CTNAG 9 cut(s) 83, 255, 646, 653, 683, 716, 1010, 1088, 1211
DpnI GATC 7 cut(s) 63, 93, 263, 736, 761, 859, 979
DpnII GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 4 cut(s) 68, 453, 764, 1095
EagI CGGCCG 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
EclXI CGGCCG 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 1159
Eco31I GGTCTC 1 cut(s) 1149
Eco32I GATATC 1 cut(s) 779
Eco47I GGWCC 1 cut(s) 78
Eco52I CGGCCG 1 cut(s) 68
Eco57I CTGAAG 3 cut(s) 345, 583, 1092
Eco81I CCTNAGG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 738, 1080
Eco91I GGTNACC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 606
EcoRI GAATTC 1 cut(s) 631
EcoRV GATATC 1 cut(s) 779
EcoT14I CCWWGG 1 cut(s) 1159
EcoT22I ATGCAT 1 cut(s) 1223
ErhI CCWWGG 1 cut(s) 1159
Esp3I CGTCTC 1 cut(s) 295
FaeI CATG 8 cut(s) 971, 989, 1034, 1105, 1163, 1168, 1225, 1305
FaqI GGGAC 1 cut(s) 64
FatI CATG 8 cut(s) 967, 985, 1030, 1101, 1159, 1164, 1221, 1301
FauNDI CATATG 1 cut(s) 1217
Fnu4HI GCNGC 7 cut(s) 14, 68, 237, 321, 767, 1286, 1289
FokI GGATG 3 cut(s) 374, 503, 675
Fsp4HI GCNGC 7 cut(s) 14, 68, 237, 321, 767, 1286, 1289
FspBI CTAG 3 cut(s) 27, 422, 855
GluI GCNGC 7 cut(s) 14, 68, 237, 321, 767, 1286, 1289
HaeIII GGCC 4 cut(s) 70, 455, 766, 1097
HapII CCGG 2 cut(s) 76, 456
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 8 cut(s) 971, 989, 1034, 1105, 1163, 1168, 1225, 1305
HincII GTYRAC 1 cut(s) 1328
HindII GTYRAC 1 cut(s) 1328
HinfI GANTC 4 cut(s) 587, 1055, 1123, 1295
HpaII CCGG 2 cut(s) 76, 456
HphI GGTGA 1 cut(s) 600
Hpy166II GTNNAC 3 cut(s) 252, 1021, 1328
Hpy188I TCNGA 4 cut(s) 602, 723, 871, 1111
Hpy8I GTNNAC 3 cut(s) 252, 1021, 1328
HpyAV CCTTC 5 cut(s) 277, 597, 623, 831, 1189
HpyCH4III ACNGT 4 cut(s) 56, 436, 815, 891
HpyCH4IV ACGT 3 cut(s) 288, 803, 1017
HpyCH4V TGCA 7 cut(s) 299, 626, 643, 674, 824, 1129, 1221
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 341, 1103
HpyF3I CTNAG 9 cut(s) 83, 255, 646, 653, 683, 716, 1010, 1088, 1211
HpySE526I ACGT 3 cut(s) 288, 803, 1017
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 8 cut(s) 971, 989, 1034, 1105, 1163, 1168, 1225, 1305
Kzo9I GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
LmnI GCTCC 4 cut(s) 50, 162, 787, 1069
Lsp1109I GCAGC 3 cut(s) 223, 332, 1272
LweI GCATC 5 cut(s) 352, 481, 613, 875, 984
MaeI CTAG 3 cut(s) 27, 422, 855
MaeII ACGT 3 cut(s) 288, 803, 1017
MaeIII GTNAC 4 cut(s) 56, 606, 799, 1071
MalI GATC 7 cut(s) 63, 93, 263, 736, 761, 859, 979
MboI GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
MboII GAAGA 8 cut(s) 127, 177, 338, 723, 761, 860, 1250, 1253
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 2 cut(s) 261, 734
MhlI GDGCHC 1 cut(s) 1320
MlsI TGGCCA 1 cut(s) 1097
MluNI TGGCCA 1 cut(s) 1097
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 1097
Mph1103I ATGCAT 1 cut(s) 1223
MscI TGGCCA 1 cut(s) 1097
MseI TTAA 4 cut(s) 231, 348, 875, 1342
MslI CAYNNNNRTG 1 cut(s) 1220
Msp20I TGGCCA 1 cut(s) 1097
MspA1I CMGCKG 2 cut(s) 50, 323
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 2 cut(s) 76, 456
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 450
MwoI GCNNNNNNNGC 3 cut(s) 188, 341, 1103
NcoI CCATGG 1 cut(s) 1159
NdeI CATATG 1 cut(s) 1217
NdeII GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
NlaIII CATG 8 cut(s) 971, 989, 1034, 1105, 1163, 1168, 1225, 1305
NlaIV GGNNCC 3 cut(s) 80, 164, 1065
NmuCI GTSAC 2 cut(s) 56, 606
NsiI ATGCAT 1 cut(s) 1223
NspI RCATGY 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 738
PagI TCATGA 1 cut(s) 1030
PctI GAATGC 1 cut(s) 450
PfeI GAWTC 3 cut(s) 1055, 1123, 1295
PflFI GACNNNGTC 2 cut(s) 717, 813
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 7 cut(s) 15, 69, 238, 322, 768, 1287, 1290
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PspEI GGTNACC 1 cut(s) 606
PspN4I GGNNCC 3 cut(s) 80, 164, 1065
PspPI GGNCC 1 cut(s) 78
PsuI RGATCY 2 cut(s) 261, 734
PsyI GACNNNGTC 2 cut(s) 717, 813
PvuI CGATCG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 3 cut(s) 74, 143, 1190
RsaNI GTAC 3 cut(s) 73, 142, 1189
RseI CAYNNNNRTG 1 cut(s) 1220
SaqAI TTAA 4 cut(s) 231, 348, 875, 1342
SatI GCNGC 7 cut(s) 14, 68, 237, 321, 767, 1286, 1289
Sau3AI GATC 7 cut(s) 61, 91, 261, 734, 759, 857, 977
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 1 cut(s) 596
SduI GDGCHC 1 cut(s) 1320
SfaNI GCATC 5 cut(s) 352, 481, 613, 875, 984
Sfr274I CTCGAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 1220
SmlI CTYRAG 5 cut(s) 230, 552, 738, 899, 1321
SmoI CTYRAG 5 cut(s) 230, 552, 738, 899, 1321
SpeI ACTAGT 1 cut(s) 26
SsiI CCGC 5 cut(s) 14, 48, 67, 767, 1288
SspMI CTAG 3 cut(s) 27, 422, 855
StyI CCWWGG 1 cut(s) 1159
TaaI ACNGT 4 cut(s) 56, 436, 815, 891
TaiI ACGT 3 cut(s) 291, 806, 1020
TaqI TCGA 6 cut(s) 128, 352, 585, 739, 846, 1148
TauI GCSGC 4 cut(s) 16, 70, 769, 1291
TfiI GAWTC 3 cut(s) 1055, 1123, 1295
Tru1I TTAA 4 cut(s) 231, 348, 875, 1342
Tru9I TTAA 4 cut(s) 231, 348, 875, 1342
TscAI CASTG 5 cut(s) 24, 573, 894, 965, 1057
TseFI GTSAC 2 cut(s) 56, 606
TseI GCWGC 3 cut(s) 236, 320, 1285
Tsp45I GTSAC 2 cut(s) 56, 606
TspDTI ATGAA 3 cut(s) 365, 396, 624
TspRI CASTG 5 cut(s) 24, 573, 894, 965, 1057
Tth111I GACNNNGTC 2 cut(s) 717, 813
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 631, 752
XceI RCATGY 1 cut(s) 971
XhoI CTCGAG 1 cut(s) 738
XspI CTAG 3 cut(s) 27, 422, 855
ZraI GACGTC 1 cut(s) 289
Zsp2I ATGCAT 1 cut(s) 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.