Rh6BG457400
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007426
Physical Location & Seq
Forward (+)
66930307 .. 66936573
6267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG457400.1

Sequence Viewer

Length: 1224 bp
ATGAATAACAAGGCCATTGTTGATGATTGGAGGATCAAGCTGCTCTTCCCTTTGCTCTTGCTAATTGATTTCTTGTTGAAGCAACGACCTATTGCTTCCTTCATTTTTGAGCGTGTTAGACAGAGGGAAAGTTTAAGAAATATCTTATCATCTGTTTACGCCAACAAAGAATCTGTGGATGACGAATTAGTAGAGATCATAATGGAACCAACAAGTGACCCAGGTGCACTGGACGCTTTTGTCTCAATCGTAACAGGCCCACCAGGACCAAACCCGGTCCAGTTAATGCCAGGCCTCTCCCTACCGATTCTAGTCCTATGGGGCGATGAAGACCCGTTCACTCCACTCGATGGGCCTGTTGGCAAATACTTCACTTCCTTACCTTCCCAGAAATCGAATGTGAGCCTCTCCATTTTACAAGGAGTTGGGCACTGCCCCCACGATGACAGGCCCAAGTTGGTCCACGACAAACTTCTTCCCTGGTTGGATAATCTTTCTATAGAAAATCCAGTTTCTCAATTGGAAGACCTAATTTCAATGGCGTGTCTGCCGCCACTGATGACTAGTTCAACTGCCATCTGCTCCGCTGACTGTGACGATCGGCGGCCGTACCGGTCCCTGAGGTATGATCGTTGGAATGGTTGTGGTGAGAAGAACACGAAATCGACACGAAGCAAGTACCAGAGGAGGAGGAGGAGCCTTGTTCTTGGCTCTGCTTCTTCTGCTTCTGCTTCTGCTTCCCCTCGTTCCCATATTTATCAGCAGGTTCTTAAGGCTGCCAGACAAAAGTTTACTCAGGAGATCTCCTTCCAGTCTAAAGACAAGGACGTCTCTCTTGCAAAGGCTTTGCTCTACATAGCAGCTGAAGATGAGGCATTTATGGCTTTTAATCGAGAGATGGATGCTTTCTCAATTCATAATGAAAGAAAAGGTGTTTCTGGCTCATCTACTCCCCAAGACCTAGCGTGGAATACTGTGGAGGGAATGCCATTGGCCGGAAAAAATATACATGAGTGGCAAGCTGAACTGGATGCTATTGCCAAAGAAGTTGAAGCAGAGCTAATTTCAAAAGACATAGGTTGTCATTTGGCTCAAGTTTTGGAGGCAGTGAATGTGGTTCTTTTTGAGTCAAGAGGCTTCAGAAGGTCACCCGTTCTTGGAGATGCAAAGAATTCATACTTGCACTTAGTTCTAAGCTCTGGAAGTGGAATTGGTGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

407

Amino Acids

45.13

Weight (kDa)

5.83

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 338 - 404 3.9e-06 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 239, 827
AatII GACGTC 1 cut(s) 831
Acc36I ACCTGC 1 cut(s) 754
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 3 cut(s) 551, 585, 604
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 2 cut(s) 605, 993
AcsI RAATTY 1 cut(s) 1171
AcuI CTGAAG 2 cut(s) 885, 1123
AcyI GRCGYC 1 cut(s) 828
AfaI GTAC 2 cut(s) 611, 680
AfiI CCNNNNNNNGG 3 cut(s) 350, 995, 1157
AflII CTTAAG 1 cut(s) 770
AgeI ACCGGT 1 cut(s) 612
AgsI TTSAA 5 cut(s) 79, 537, 570, 1052, 1068
AhlI ACTAGT 1 cut(s) 563
AjnI CCWGG 4 cut(s) 220, 262, 289, 479
AluBI AGCT 5 cut(s) 40, 863, 1022, 1060, 1197
AluI AGCT 5 cut(s) 40, 863, 1022, 1060, 1197
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 2 cut(s) 247, 835
Alw44I GTGCAC 1 cut(s) 225
AlwI GGATC 1 cut(s) 41
AoxI GGCC 7 cut(s) 12, 256, 292, 353, 449, 605, 993
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 40, 776, 860
ApoI RAATTY 1 cut(s) 1171
AsiGI ACCGGT 1 cut(s) 612
AspS9I GGNCC 7 cut(s) 257, 266, 277, 353, 450, 460, 615
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 659, 1140
AvaII GGWCC 4 cut(s) 266, 277, 460, 615
AxyI CCTNAGG 1 cut(s) 620
BaeGI GKGCMC 2 cut(s) 229, 432
BbsI GAAGAC 2 cut(s) 336, 531
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 27, 763, 872
BccI CCATC 3 cut(s) 344, 584, 892
BceAI ACGGC 1 cut(s) 592
BciT130I CCWGG 4 cut(s) 222, 264, 291, 481
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 247, 835
BcuI ACTAGT 1 cut(s) 563
BfaI CTAG 3 cut(s) 311, 564, 962
BfmI CTRYAG 1 cut(s) 498
BfrI CTTAAG 1 cut(s) 770
BfuAI ACCTGC 1 cut(s) 754
BglII AGATCT 1 cut(s) 801
BisI GCNGC 5 cut(s) 41, 551, 605, 777, 861
BlsI GCNGC 5 cut(s) 42, 552, 606, 778, 862
Bme1390I CCNGG 5 cut(s) 222, 264, 275, 291, 481
Bme18I GGWCC 4 cut(s) 266, 277, 460, 615
BmgT120I GGNCC 7 cut(s) 257, 266, 277, 353, 450, 460, 615
BmiI GGNNCC 3 cut(s) 207, 617, 698
BmrFI CCNGG 5 cut(s) 222, 264, 275, 291, 481
BmsI GCATC 3 cut(s) 892, 1021, 1153
BpiI GAAGAC 2 cut(s) 336, 531
BpuEI CTTGAG 1 cut(s) 1077
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 220, 479
BsaWI WCCGGW 1 cut(s) 612
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 995, 1157
Bse118I RCCGGY 1 cut(s) 612
Bse1I ACTGG 5 cut(s) 234, 280, 509, 811, 1032
Bse21I CCTNAGG 1 cut(s) 620
BseBI CCWGG 4 cut(s) 222, 264, 291, 481
BseDI CCNNGG 2 cut(s) 220, 479
BseGI GGATG 3 cut(s) 184, 907, 1036
BseLI CCNNNNNNNGG 3 cut(s) 350, 995, 1157
BseMII CTCAG 2 cut(s) 611, 809
BseNI ACTGG 5 cut(s) 234, 280, 509, 811, 1032
BseRI GAGGAG 4 cut(s) 700, 703, 706, 709
BseSI GKGCMC 2 cut(s) 229, 432
BseX3I CGGCCG 1 cut(s) 605
BseXI GCAGC 3 cut(s) 27, 763, 872
Bsh1285I CGRYCG 2 cut(s) 601, 608
BshFI GGCC 7 cut(s) 14, 258, 294, 355, 451, 607, 995
BshTI ACCGGT 1 cut(s) 612
BsiEI CGRYCG 2 cut(s) 601, 608
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 275, 613, 996
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 3 cut(s) 350, 995, 1157
BsmAI GTCTC 2 cut(s) 247, 835
BsmBI CGTCTC 1 cut(s) 835
BsmFI GGGAC 1 cut(s) 601
BsmI GAATGC 1 cut(s) 990
BsnI GGCC 7 cut(s) 14, 258, 294, 355, 451, 607, 995
Bsp1286I GDGCHC 2 cut(s) 229, 432
Bsp143I GATC 5 cut(s) 33, 195, 598, 628, 801
BspACI CCGC 3 cut(s) 551, 585, 604
BspANI GGCC 7 cut(s) 14, 258, 294, 355, 451, 607, 995
BspCNI CTCAG 2 cut(s) 612, 808
BspLI GGNNCC 3 cut(s) 207, 617, 698
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 612
BsrI ACTGG 5 cut(s) 234, 280, 509, 811, 1032
BssAI RCCGGY 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 220, 479
BssMI GATC 5 cut(s) 33, 195, 598, 628, 801
BssNI GRCGYC 1 cut(s) 828
Bst2UI CCWGG 4 cut(s) 222, 264, 291, 481
Bst4CI ACNGT 2 cut(s) 593, 976
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 828
BstAFI CTTAAG 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 1020
BstDEI CTNAG 4 cut(s) 620, 795, 1186, 1193
BstEII GGTNACC 1 cut(s) 1146
BstF5I GGATG 3 cut(s) 184, 907, 1036
BstKTI GATC 5 cut(s) 36, 198, 601, 631, 804
BstMAI GTCTC 2 cut(s) 247, 835
BstMBI GATC 5 cut(s) 33, 195, 598, 628, 801
BstMCI CGRYCG 2 cut(s) 601, 608
BstMWI GCNNNNNNNGC 3 cut(s) 233, 722, 881
BstNI CCWGG 4 cut(s) 222, 264, 291, 481
BstPI GGTNACC 1 cut(s) 1146
BstSCI CCNGG 5 cut(s) 220, 262, 273, 289, 479
BstSFI CTRYAG 1 cut(s) 498
BstSLI GKGCMC 2 cut(s) 229, 432
BstV1I GCAGC 3 cut(s) 27, 763, 872
BstV2I GAAGAC 2 cut(s) 336, 531
BstX2I RGATCY 1 cut(s) 801
BstYI RGATCY 1 cut(s) 801
BstZI CGGCCG 1 cut(s) 605
Bsu36I CCTNAGG 1 cut(s) 620
BsuRI GGCC 7 cut(s) 14, 258, 294, 355, 451, 607, 995
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 3 cut(s) 184, 907, 1036
BtsI GCAGTG 2 cut(s) 430, 1113
BtsIMutI CAGTG 4 cut(s) 227, 430, 554, 1113
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 1 cut(s) 1020
Cfr10I RCCGGY 1 cut(s) 612
Cfr13I GGNCC 7 cut(s) 257, 266, 277, 353, 450, 460, 615
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 610, 679
CspAI ACCGGT 1 cut(s) 612
CviAII CATG 1 cut(s) 1010
CviQI GTAC 2 cut(s) 610, 679
DdeI CTNAG 4 cut(s) 620, 795, 1186, 1193
DpnI GATC 5 cut(s) 35, 197, 600, 630, 803
DpnII GATC 5 cut(s) 33, 195, 598, 628, 801
DrdI GACNNNNNNGTC 2 cut(s) 239, 827
DseDI GACNNNNNNGTC 2 cut(s) 239, 827
EaeI YGGCCR 2 cut(s) 605, 993
EagI CGGCCG 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 605
Eco147I AGGCCT 1 cut(s) 294
Eco47I GGWCC 4 cut(s) 266, 277, 460, 615
Eco52I CGGCCG 1 cut(s) 605
Eco57I CTGAAG 2 cut(s) 885, 1123
Eco81I CCTNAGG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 1146
EcoO65I GGTNACC 1 cut(s) 1146
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 4 cut(s) 220, 262, 289, 479
Esp3I CGTCTC 1 cut(s) 835
FaeI CATG 1 cut(s) 1013
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 601
FatI CATG 1 cut(s) 1009
Fnu4HI GCNGC 5 cut(s) 41, 551, 605, 777, 861
FokI GGATG 3 cut(s) 191, 914, 1043
Fsp4HI GCNGC 5 cut(s) 41, 551, 605, 777, 861
FspBI CTAG 3 cut(s) 311, 564, 962
GluI GCNGC 5 cut(s) 41, 551, 605, 777, 861
HaeIII GGCC 7 cut(s) 14, 258, 294, 355, 451, 607, 995
HapII CCGG 3 cut(s) 275, 613, 996
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 828
Hin1II CATG 1 cut(s) 1013
HinfI GANTC 3 cut(s) 170, 307, 1127
HpaII CCGG 3 cut(s) 275, 613, 996
HphI GGTGA 2 cut(s) 659, 1140
Hpy166II GTNNAC 5 cut(s) 157, 227, 339, 463, 792
Hpy188I TCNGA 1 cut(s) 1142
Hpy188III TCNNGA 4 cut(s) 797, 893, 1131, 1200
Hpy8I GTNNAC 5 cut(s) 157, 227, 339, 463, 792
HpyAV CCTTC 4 cut(s) 109, 393, 817, 1137
HpyCH4III ACNGT 2 cut(s) 593, 976
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 4 cut(s) 227, 839, 1166, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 722, 881
HpyF3I CTNAG 4 cut(s) 620, 795, 1186, 1193
HpySE526I ACGT 1 cut(s) 828
Hsp92I GRCGYC 1 cut(s) 828
Hsp92II CATG 1 cut(s) 1013
Kzo9I GATC 5 cut(s) 33, 195, 598, 628, 801
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 2 cut(s) 587, 696
Lsp1109I GCAGC 3 cut(s) 27, 763, 872
LweI GCATC 3 cut(s) 892, 1021, 1153
MaeI CTAG 3 cut(s) 311, 564, 962
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 4 cut(s) 215, 250, 593, 1146
MalI GATC 5 cut(s) 35, 197, 600, 630, 803
MboI GATC 5 cut(s) 33, 195, 598, 628, 801
MboII GAAGA 7 cut(s) 37, 341, 467, 536, 664, 711, 878
MfeI CAATTG 1 cut(s) 518
MflI RGATCY 1 cut(s) 801
MhlI GDGCHC 2 cut(s) 229, 432
MluCI AATT 8 cut(s) 63, 185, 518, 531, 912, 1062, 1171, 1209
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 2 cut(s) 465, 614
MseI TTAA 4 cut(s) 134, 284, 771, 888
MspA1I CMGCKG 2 cut(s) 587, 863
MspCI CTTAAG 1 cut(s) 770
MspI CCGG 3 cut(s) 275, 613, 996
MspR9I CCNGG 5 cut(s) 222, 264, 275, 291, 481
MunI CAATTG 1 cut(s) 518
Mva1269I GAATGC 1 cut(s) 990
MvaI CCWGG 4 cut(s) 222, 264, 291, 481
MwoI GCNNNNNNNGC 3 cut(s) 233, 722, 881
NciI CCSGG 1 cut(s) 275
NdeII GATC 5 cut(s) 33, 195, 598, 628, 801
NlaIII CATG 1 cut(s) 1013
NlaIV GGNNCC 3 cut(s) 207, 617, 698
NmuCI GTSAC 3 cut(s) 215, 593, 1146
PceI AGGCCT 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 50
PctI GAATGC 1 cut(s) 990
PfeI GAWTC 2 cut(s) 170, 307
PflMI CCANNNNNTGG 1 cut(s) 350
PinAI ACCGGT 1 cut(s) 612
PkrI GCNGC 5 cut(s) 42, 552, 606, 778, 862
Ple19I CGATCG 1 cut(s) 601
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Psp6I CCWGG 4 cut(s) 220, 262, 289, 479
PspEI GGTNACC 1 cut(s) 1146
PspGI CCWGG 4 cut(s) 220, 262, 289, 479
PspN4I GGNNCC 3 cut(s) 207, 617, 698
PspPI GGNCC 7 cut(s) 257, 266, 277, 353, 450, 460, 615
PsuI RGATCY 1 cut(s) 801
PvuI CGATCG 1 cut(s) 601
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 2 cut(s) 611, 680
RsaNI GTAC 2 cut(s) 610, 679
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 4 cut(s) 134, 284, 771, 888
SatI GCNGC 5 cut(s) 41, 551, 605, 777, 861
Sau3AI GATC 5 cut(s) 33, 195, 598, 628, 801
Sau96I GGNCC 7 cut(s) 257, 266, 277, 353, 450, 460, 615
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 5 cut(s) 222, 264, 275, 291, 481
SduI GDGCHC 2 cut(s) 229, 432
SfaNI GCATC 3 cut(s) 892, 1021, 1153
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 4 cut(s) 266, 277, 460, 615
SmlI CTYRAG 2 cut(s) 770, 1092
SmoI CTYRAG 2 cut(s) 770, 1092
SpeI ACTAGT 1 cut(s) 563
Sse9I AATT 8 cut(s) 63, 185, 518, 531, 912, 1062, 1171, 1209
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 3 cut(s) 551, 585, 604
SspMI CTAG 3 cut(s) 311, 564, 962
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 5 cut(s) 220, 262, 273, 289, 479
TaaI ACNGT 2 cut(s) 593, 976
TaiI ACGT 1 cut(s) 831
TaqI TCGA 4 cut(s) 348, 395, 665, 892
TasI AATT 8 cut(s) 63, 185, 518, 531, 912, 1062, 1171, 1209
TauI GCSGC 2 cut(s) 553, 607
TfiI GAWTC 2 cut(s) 170, 307
Tru1I TTAA 4 cut(s) 134, 284, 771, 888
Tru9I TTAA 4 cut(s) 134, 284, 771, 888
TscAI CASTG 4 cut(s) 234, 437, 561, 1113
TseFI GTSAC 3 cut(s) 215, 593, 1146
TseI GCWGC 3 cut(s) 40, 776, 860
Tsp45I GTSAC 3 cut(s) 215, 593, 1146
TspDTI ATGAA 6 cut(s) 17, 91, 342, 905, 936, 1164
TspRI CASTG 4 cut(s) 234, 437, 561, 1113
Van91I CCANNNNNTGG 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 770
VneI GTGCAC 1 cut(s) 225
VpaK11BI GGWCC 4 cut(s) 266, 277, 460, 615
XapI RAATTY 1 cut(s) 1171
XspI CTAG 3 cut(s) 311, 564, 962
ZraI GACGTC 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.