FvH4_2g37180
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007426
Physical Location & Seq
Forward (+)
27134194 .. 27137415
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37180.t1

Sequence Viewer

Length: 420 bp
ATGCTTAGCATTATATACATTGAGGTCTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAGGAAATCCAGAGGAGCTATTCAAGGTAACTTCAGGGCACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAAGGCATCAGATTTAACAAGCAATTCACTGTCGGGTCTTGAGATAGCTACTAACCGAGACATATATATTGGGATTGCCTTGGCAAATCTTGTTAGGCTTCACTGGAAACATGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGGCATGTTCACAATGCTCATGATAAACTTTACAAGATCACTGATTCAAAGGCTCCTCTGTTACGACCCCAAGAACTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

140

Amino Acids

15.61

Weight (kDa)

9.34

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transglut_core2 PF13369 1 - 82 2.4e-06 Transglutaminase-like superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 86
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 3 cut(s) 118, 300, 384
AluBI AGCT 2 cut(s) 112, 230
AluI AGCT 2 cut(s) 112, 230
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 40, 177
BcoDI GTCTC 1 cut(s) 234
BfaI CTAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 89
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 390
BmsI GCATC 2 cut(s) 197, 309
BpiI GAAGAC 2 cut(s) 40, 177
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 290
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 290
BseRI GAGGAG 2 cut(s) 122, 381
BseSI GKGCMC 1 cut(s) 135
BshFI GGCC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 234
BsnI GGCC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 5 cut(s) 56, 81, 179, 302, 372
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 89
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 348
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 5 cut(s) 56, 81, 179, 302, 372
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 137, 213
BstDEI CTNAG 4 cut(s) 5, 38, 335, 413
BstKTI GATC 5 cut(s) 59, 84, 182, 305, 375
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 5 cut(s) 56, 81, 179, 302, 372
BstNSI RCATGY 2 cut(s) 296, 344
BstSLI GKGCMC 1 cut(s) 135
BstV2I GAAGAC 2 cut(s) 40, 177
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 209, 283, 375
CciI TCATGA 1 cut(s) 355
CviAII CATG 4 cut(s) 293, 311, 341, 356
CviJI RGCY 5 cut(s) 88, 112, 230, 280, 389
CviKI_1 RGCY 5 cut(s) 88, 112, 230, 280, 389
DdeI CTNAG 4 cut(s) 5, 38, 335, 413
DpnI GATC 5 cut(s) 58, 83, 181, 304, 374
DpnII GATC 5 cut(s) 56, 81, 179, 302, 372
EaeI YGGCCR 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 4 cut(s) 296, 314, 344, 359
FatI CATG 4 cut(s) 292, 310, 340, 355
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 177
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 4 cut(s) 296, 314, 344, 359
HinfI GANTC 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 45, 193
Hpy188III TCNNGA 5 cut(s) 60, 104, 221, 300, 356
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 137, 213
HpyCH4V TGCA 1 cut(s) 146
HpyF3I CTNAG 4 cut(s) 5, 38, 335, 413
Hsp92II CATG 4 cut(s) 296, 314, 344, 359
Kzo9I GATC 5 cut(s) 56, 81, 179, 302, 372
LmnI GCTCC 2 cut(s) 109, 394
LpnPI CCDG 6 cut(s) 70, 81, 114, 117, 271, 322
LweI GCATC 2 cut(s) 197, 309
MaeI CTAG 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 121, 396
MalI GATC 5 cut(s) 58, 83, 181, 304, 374
MboI GATC 5 cut(s) 56, 81, 179, 302, 372
MboII GAAGA 3 cut(s) 45, 83, 182
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 3 cut(s) 74, 147, 205
MnlI CCTC 3 cut(s) 16, 100, 402
MseI TTAA 1 cut(s) 197
MunI CAATTG 1 cut(s) 147
NdeII GATC 5 cut(s) 56, 81, 179, 302, 372
NlaIII CATG 4 cut(s) 296, 314, 344, 359
NlaIV GGNNCC 1 cut(s) 390
NspI RCATGY 2 cut(s) 296, 344
PaeR7I CTCGAG 1 cut(s) 60
PagI TCATGA 1 cut(s) 355
PfeI GAWTC 1 cut(s) 380
PflFI GACNNNGTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 56
PsyI GACNNNGTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 5 cut(s) 56, 81, 179, 302, 372
SduI GDGCHC 1 cut(s) 135
SetI ASST 6 cut(s) 27, 114, 123, 164, 232, 419
SfaNI GCATC 2 cut(s) 197, 309
Sfr274I CTCGAG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 60, 221
SmoI CTYRAG 2 cut(s) 60, 221
Sse9I AATT 3 cut(s) 74, 147, 205
SsiI CCGC 1 cut(s) 89
SspMI CTAG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 137, 213
TaqI TCGA 2 cut(s) 61, 168
TasI AATT 3 cut(s) 74, 147, 205
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 3 cut(s) 216, 290, 382
TspRI CASTG 3 cut(s) 216, 290, 382
Tth111I GACNNNGTC 1 cut(s) 39
XapI RAATTY 1 cut(s) 74
XceI RCATGY 2 cut(s) 296, 344
XhoI CTCGAG 1 cut(s) 60
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.