RLG00000006643
ERF Family

Transglutaminase-like superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007426
Physical Location & Seq
Reverse (-)
9298619 .. 9300955
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006643

Sequence Viewer

Length: 399 bp
ATGAGACGACGCTTTGCTCTGGGATATAAATTGGGCTGTTTGGTTGTTAACAGTCCAATTAGACTATATACTACTCGTCACCTACGTCTGCTGGTGCCGAATGCATTGATCTTAATTGTGCTTGGGTGGAGTTGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAGCAGGATATCCAGAGGGCTTGAGATAGCTACAAACCGAGACATTATTGGGATTGCTTTGGCCAATCTTATTAGGCTTCACTGGAAACTTGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGACATGTTCACAATGCTCATGATAAACTTTACAAAATCACTGATTCAAAGGCTCCTCTGTTACGACCCCAAAAACTTAGACTGATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_9 Transglut_core2

Protein Analysis

133

Amino Acids

14.97

Weight (kDa)

11.59

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AciI CCGC 1 cut(s) 171
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 168, 234
AcsI RAATTY 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 270, 354
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 146
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 168, 234
ApoI RAATTY 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 142
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 207
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 96, 360
BmsI GCATC 1 cut(s) 279
BoxI GACNNNNGTC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 215
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 351
BshFI GGCC 2 cut(s) 170, 236
BshNI GGYRCC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 2 cut(s) 170, 236
BsoBI CYCGRG 1 cut(s) 142
Bsp143I GATC 4 cut(s) 108, 138, 163, 272
BspACI CCGC 1 cut(s) 171
BspANI GGCC 2 cut(s) 170, 236
BspCNI CTCAG 1 cut(s) 318
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 2 cut(s) 96, 360
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 260
BssMI GATC 4 cut(s) 108, 138, 163, 272
Bst4CI ACNGT 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 305, 383
BstKTI GATC 4 cut(s) 111, 141, 166, 275
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 4 cut(s) 108, 138, 163, 272
BstNSI RCATGY 1 cut(s) 314
BstPAI GACNNNNGTC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 2 cut(s) 170, 236
BtsIMutI CAGTG 2 cut(s) 253, 345
Cac8I GCNNGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 325
CseI GACGC 1 cut(s) 18
CviAII CATG 3 cut(s) 281, 311, 326
CviJI RGCY 7 cut(s) 36, 170, 193, 203, 236, 250, 359
CviKI_1 RGCY 7 cut(s) 36, 170, 193, 203, 236, 250, 359
DdeI CTNAG 2 cut(s) 305, 383
DpnI GATC 4 cut(s) 110, 140, 165, 274
DpnII GATC 4 cut(s) 108, 138, 163, 272
EaeI YGGCCR 2 cut(s) 168, 234
Eco32I GATATC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 106
FaeI CATG 3 cut(s) 284, 314, 329
FaiI YATR 6 cut(s) 27, 67, 69, 282, 312, 327
FatI CATG 3 cut(s) 280, 310, 325
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 2 cut(s) 170, 236
HgaI GACGC 1 cut(s) 18
Hin1II CATG 3 cut(s) 284, 314, 329
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 350
HpaI GTTAAC 1 cut(s) 49
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 49, 316
Hpy188I TCNGA 1 cut(s) 308
Hpy188III TCNNGA 4 cut(s) 142, 186, 270, 326
Hpy8I GTNNAC 2 cut(s) 49, 316
Hpy99I CGWCG 1 cut(s) 12
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 305, 383
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 3 cut(s) 284, 314, 329
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 4 cut(s) 108, 138, 163, 272
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 6 cut(s) 5, 77, 152, 163, 199, 241
LweI GCATC 1 cut(s) 279
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 77, 366
MalI GATC 4 cut(s) 110, 140, 165, 274
MboI GATC 4 cut(s) 108, 138, 163, 272
MboII GAAGA 1 cut(s) 165
MflI RGATCY 1 cut(s) 138
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 4 cut(s) 29, 57, 114, 156
MluNI TGGCCA 1 cut(s) 236
MnlI CCTC 2 cut(s) 182, 372
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 106
MscI TGGCCA 1 cut(s) 236
MseI TTAA 3 cut(s) 48, 113, 397
Msp20I TGGCCA 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 106
NdeII GATC 4 cut(s) 108, 138, 163, 272
NlaIII CATG 3 cut(s) 284, 314, 329
NlaIV GGNNCC 2 cut(s) 96, 360
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 142
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 172
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 96, 360
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 3 cut(s) 48, 113, 397
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 4 cut(s) 108, 138, 163, 272
SetI ASST 3 cut(s) 84, 88, 205
SfaNI GCATC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 142
SlaI CTCGAG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 142, 194
SmoI CTYRAG 2 cut(s) 142, 194
Sse9I AATT 4 cut(s) 29, 57, 114, 156
SsiI CCGC 1 cut(s) 171
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 143
TasI AATT 4 cut(s) 29, 57, 114, 156
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 3 cut(s) 48, 113, 397
Tru9I TTAA 3 cut(s) 48, 113, 397
TscAI CASTG 2 cut(s) 260, 352
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 2 cut(s) 260, 352
XapI RAATTY 1 cut(s) 156
XceI RCATGY 1 cut(s) 314
XhoI CTCGAG 1 cut(s) 142
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.