Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007426

Physical Location & Seq

Genomic Coordinates Forward (+)

27155437 .. 27158852

Gene Structure 3416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCGTCGTGTCTGCCACCGCTGATGACTCGCTCAGCTTCCGTCTGCGCTGCTGACTGTGACGATCGGCGGAGCCTGAGGTATGTTCGATGGAATGGTTATGATGAGAGGACCACGAAATCGAGCAAGTACCAGAGGAGGAGGAGGAGCCTTGTTCTTGGCTCTGCTTCTTCTGCTTCTGCTGCTTCCCCTCGTGCCCAAATTTATCAGCAGGTTCTTAAGGCTGCCAGACAAAAGTTTACTCAGGAAATCTCCTTCCGGTCCAAAGACAAGGACGTCTCTCTTGCGAAGGCTTTGCTCTACATAGCAGCTGAAGATGAAGCATTTATGGCTTTTAATCGAGAGATGGATGCTTTCTCAATTCATAAGGAAAGAAAAGGTGTTTCTGGCCCACCAACTCCCCAAGAGCAAGAGTGGAATGATGTGGAGGGCATGTCATTGGCTGGGAAAACTATACATGATTGGCAGGCTGAACTGGATGCTATTGCCAAAGAAGTTGAAGCAGAGCTAATTTCAAAAGACATAGGTTGTCATTTGGCTCAAGTTTTGGAGGCAGTAAATATGGTTCTTTTTGAGTCAAGAGGCTTCAGAAGGTCGCCCGTTCTTGGAGATCCAAAGAATTCATACTTGCACTTAGTTCTAAGCTCTGGATGTGGAATTGCAATAATGCTTAGCATTATATACATTGAGGTCTGCCGAAGACTTAGTCTGACCATAGTGGGATCTCGAGTTGGGGAAGAATTTTTGATCTGGCCGCAAACAGGAAATCCAGAGGAGCTGTTCAAGGTAACGTCAGGGCACAGTCTGTTTGCAATTGTCAATGGAAGGTGTGTCGAAGACCCTAGATCAAAGGCATCAGATTTAACAAGCAATTCACTGTCGGGTCTCGAGATAGCTACTAACCGAGACATTATTGGGATTGCCTTGGCAAATCTTGTTAGGCTTCACTGGAAACATGCTTCAAGATCAACTCATGGACTGATGCTGACTTCTCCACTCAGGCATGTTCACAATGCTCATGATAAACTTTACAAGATCACTGATTCAAAGGCTCCTCTGTTACGACCCCAAGAACTAAGGTTGGCCATCATGGCTTCAGAAAGATTGTTGATCCTCCAACCACATAATTGGGCCTCGAGGAGAGACCATGGCATGATGCTATACTACAATAGGGAGTACGGGAAGGCTGTCCAAGAGCTTAGCATCTGCATGGCTTTTGCCCCAGAAGAAGAGGCAGAAGTTCTTGAACCATTTGTCGAGAAGTTGCATCTGCTGCGGCTTGAATCATCGTGGAAATCTTTAGAGCACTCAAGTCAAGTGAAAGTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_9 Transglut_core2

Protein Analysis

444

Amino Acids

49.8

Weight (kDa)

8.52

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transglut_core2	PF13369	154 - 307	1.3e-22	Transglutaminase-like superfamily
TPR_9	PF13371	353 - 410	3e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007426)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19160 AT4G19160 AT4G19160 AT4G19160
fragaria_vesca	FvH4_2g37180 FvH4_2g37220
prunus_persica	Prupe.1G352900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0402301 RchiOBHm_Chr6g0304491
rosa_laevigata	RLG00000006643 RLG00000010972 RLG00000033770 RLG00000034679
rosa_multiflora	Rmu_ssc0000218.1_g000055
rosa_roxburghii	Rroxscaffold_7G00163700
rosa_rugosa	Rorug06G0332200 Rorug06G0332300 Rorug06G0332400
rosa_samantha	Rh4BG074000 Rh5CG116700 Rh6AG445000 Rh6BG457400 Rh6CG457700 Rh6DG444500
rosa_wichuraiana	Rw6G038630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AatII	GACGTC	1 cut(s)	279
AbsI	CCTCGAGG	1 cut(s)	1135
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	4 cut(s)	20, 70, 755, 1276
AclWI	GGATC	3 cut(s)	605, 730, 1105
AcoI	YGGCCR	2 cut(s)	752, 1083
AcsI	RAATTY	3 cut(s)	201, 619, 740
AcuI	CTGAAG	3 cut(s)	333, 571, 1080
AcyI	GRCGYC	2 cut(s)	5, 276
AfaI	GTAC	2 cut(s)	131, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	605, 761
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	7 cut(s)	500, 516, 784, 963, 1047, 1247, 1283
AluBI	AGCT	7 cut(s)	38, 311, 508, 645, 778, 896, 1198
AluI	AGCT	7 cut(s)	38, 311, 508, 645, 778, 896, 1198
Alw21I	GWGCWC	1 cut(s)	1308
Alw26I	GTCTC	4 cut(s)	283, 890, 900, 1137
AlwI	GGATC	3 cut(s)	605, 730, 1105
Ama87I	CYCGRG	3 cut(s)	726, 887, 1135
AoxI	GGCC	4 cut(s)	388, 752, 1083, 1131
ApeKI	GCWGC	5 cut(s)	50, 182, 224, 308, 1273
ApoI	RAATTY	3 cut(s)	201, 619, 740
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	4 cut(s)	111, 261, 389, 1131
AvaI	CYCGRG	3 cut(s)	726, 887, 1135
AvaII	GGWCC	2 cut(s)	111, 261
AxyI	CCTNAGG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	199, 801
BalI	TGGCCA	1 cut(s)	1085
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	2 cut(s)	706, 843
Bbv12I	GWGCWC	1 cut(s)	1308
BbvI	GCAGC	5 cut(s)	37, 169, 211, 320, 1260
BccI	CCATC	3 cut(s)	84, 340, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BcoDI	GTCTC	4 cut(s)	283, 890, 900, 1137
BfaI	CTAG	1 cut(s)	843
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	1091
BisI	GCNGC	7 cut(s)	51, 183, 225, 309, 755, 1274, 1277
BlpI	GCTNAGC	3 cut(s)	34, 671, 1199
BlsI	GCNGC	7 cut(s)	52, 184, 226, 310, 756, 1275, 1278
Bme18I	GGWCC	2 cut(s)	111, 261
BmeT110I	CYCGRG	3 cut(s)	726, 887, 1135
BmgT120I	GGNCC	4 cut(s)	111, 261, 389, 1131
BmiI	GGNNCC	3 cut(s)	74, 149, 1053
BmsI	GCATC	7 cut(s)	340, 469, 863, 972, 1146, 1212, 1276
BpiI	GAAGAC	2 cut(s)	706, 843
Bpu1102I	GCTNAGC	3 cut(s)	34, 671, 1199
BpuEI	CTTGAG	2 cut(s)	525, 1294
BsaHI	GRCGYC	2 cut(s)	5, 276
BsaI	GGTCTC	2 cut(s)	890, 1137
BsaJI	CCNNGG	2 cut(s)	924, 1147
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	605, 761
Bse1I	ACTGG	2 cut(s)	480, 953
Bse21I	CCTNAGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	924, 1147
BseGI	GGATG	3 cut(s)	355, 484, 656
BseLI	CCNNNNNNNGG	2 cut(s)	605, 761
BseMII	CTCAG	4 cut(s)	48, 68, 257, 1012
BseNI	ACTGG	2 cut(s)	480, 953
BseRI	GAGGAG	7 cut(s)	151, 154, 157, 160, 788, 1044, 1153
BseSI	GKGCMC	2 cut(s)	199, 801
BseXI	GCAGC	5 cut(s)	37, 169, 211, 320, 1260
BseYI	CCCAGC	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	4 cut(s)	390, 754, 1085, 1133
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	1308
BsiHKCI	CYCGRG	3 cut(s)	726, 887, 1135
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	605, 761
BsmAI	GTCTC	4 cut(s)	283, 890, 900, 1137
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	390, 754, 1085, 1133
Bso31I	GGTCTC	2 cut(s)	890, 1137
BsoBI	CYCGRG	3 cut(s)	726, 887, 1135
Bsp1286I	GDGCHC	3 cut(s)	199, 801, 1308
Bsp143I	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
Bsp1720I	GCTNAGC	3 cut(s)	34, 671, 1199
Bsp19I	CCATGG	1 cut(s)	1147
BspACI	CCGC	4 cut(s)	20, 70, 755, 1276
BspANI	GGCC	4 cut(s)	390, 754, 1085, 1133
BspCNI	CTCAG	4 cut(s)	47, 69, 256, 1011
BspHI	TCATGA	1 cut(s)	1018
BspLI	GGNNCC	3 cut(s)	74, 149, 1053
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	605, 730, 1105
BspTI	CTTAAG	1 cut(s)	218
BspTNI	GGTCTC	2 cut(s)	890, 1137
BsrI	ACTGG	2 cut(s)	480, 953
BssECI	CCNNGG	2 cut(s)	924, 1147
BssMI	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
BssNI	GRCGYC	2 cut(s)	5, 276
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	924, 1147
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	59, 803, 879
Bst6I	CTCTTC	1 cut(s)	1224
BstACI	GRCGYC	2 cut(s)	5, 276
BstAFI	CTTAAG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	1273
BstC8I	GCNNGC	1 cut(s)	468
BstDSI	CCRYGG	1 cut(s)	1147
BstF5I	GGATG	3 cut(s)	355, 484, 656
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	8 cut(s)	67, 613, 725, 750, 848, 968, 1038, 1113
BstMAI	GTCTC	4 cut(s)	283, 890, 900, 1137
BstMBI	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 182, 329, 1091, 1273
BstNSI	RCATGY	3 cut(s)	436, 959, 1007
BstSLI	GKGCMC	2 cut(s)	199, 801
BstV1I	GCAGC	5 cut(s)	37, 169, 211, 320, 1260
BstV2I	GAAGAC	2 cut(s)	706, 843
BstX2I	RGATCY	2 cut(s)	610, 722
BstXI	CCANNNNNNTGG	1 cut(s)	1128
BstYI	RGATCY	2 cut(s)	610, 722
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	4 cut(s)	390, 754, 1085, 1133
BtgI	CCRYGG	1 cut(s)	1147
BtsCI	GGATG	3 cut(s)	355, 484, 656
BtsIMutI	CAGTG	3 cut(s)	875, 946, 1038
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	1018
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	4 cut(s)	111, 261, 389, 1131
Csp6I	GTAC	2 cut(s)	130, 1177
CviQI	GTAC	2 cut(s)	130, 1177
DpnI	GATC	8 cut(s)	66, 612, 724, 749, 847, 967, 1037, 1112
DpnII	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	752, 1083
Eam1104I	CTCTTC	1 cut(s)	1224
EarI	CTCTTC	1 cut(s)	1224
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	924, 1147
Eco31I	GGTCTC	2 cut(s)	890, 1137
Eco47I	GGWCC	2 cut(s)	111, 261
Eco57I	CTGAAG	3 cut(s)	333, 571, 1080
Eco81I	CCTNAGG	1 cut(s)	77
Eco88I	CYCGRG	3 cut(s)	726, 887, 1135
EcoRI	GAATTC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	924, 1147
ErhI	CCWWGG	2 cut(s)	924, 1147
Esp3I	CGTCTC	1 cut(s)	283
Fnu4HI	GCNGC	7 cut(s)	51, 183, 225, 309, 755, 1274, 1277
FokI	GGATG	3 cut(s)	362, 491, 663
Fsp4HI	GCNGC	7 cut(s)	51, 183, 225, 309, 755, 1274, 1277
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	7 cut(s)	51, 183, 225, 309, 755, 1274, 1277
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	390, 754, 1085, 1133
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	5, 276
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	28, 575, 1043, 1283
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	240, 1009
Hpy188I	TCNGA	4 cut(s)	590, 711, 859, 1099
Hpy8I	GTNNAC	2 cut(s)	240, 1009
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	265, 283, 585, 819, 1177
HpyCH4III	ACNGT	3 cut(s)	59, 803, 879
HpyCH4IV	ACGT	2 cut(s)	276, 791
HpyCH4V	TGCA	5 cut(s)	631, 662, 812, 1209, 1267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 182, 329, 1091, 1273
HpySE526I	ACGT	2 cut(s)	276, 791
Hsp92I	GRCGYC	2 cut(s)	5, 276
HspAI	GCGC	1 cut(s)	48
Kzo9I	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
LmnI	GCTCC	4 cut(s)	72, 147, 775, 1057
Lsp1109I	GCAGC	5 cut(s)	37, 169, 211, 320, 1260
LweI	GCATC	7 cut(s)	340, 469, 863, 972, 1146, 1212, 1276
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	2 cut(s)	276, 791
MaeIII	GTNAC	3 cut(s)	59, 787, 1059
MalI	GATC	8 cut(s)	66, 612, 724, 749, 847, 967, 1037, 1112
MboI	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
MboII	GAAGA	7 cut(s)	162, 326, 711, 749, 848, 1238, 1241
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	2 cut(s)	610, 722
MhlI	GDGCHC	3 cut(s)	199, 801, 1308
MlsI	TGGCCA	1 cut(s)	1085
MluCI	AATT	9 cut(s)	201, 360, 510, 619, 657, 740, 813, 871, 1126
MluNI	TGGCCA	1 cut(s)	1085
MlyI	GAGTC	2 cut(s)	22, 584
MmeI	TCCRAC	1 cut(s)	1141
Mox20I	TGGCCA	1 cut(s)	1085
MscI	TGGCCA	1 cut(s)	1085
MseI	TTAA	4 cut(s)	219, 336, 863, 1330
MslI	CAYNNNNRTG	1 cut(s)	1208
Msp20I	TGGCCA	1 cut(s)	1085
MspA1I	CMGCKG	2 cut(s)	22, 311
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	813
MwoI	GCNNNNNNNGC	5 cut(s)	173, 182, 329, 1091, 1273
NcoI	CCATGG	1 cut(s)	1147
NdeII	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
NlaIV	GGNNCC	3 cut(s)	74, 149, 1053
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	3 cut(s)	436, 959, 1007
PaeR7I	CTCGAG	3 cut(s)	726, 887, 1135
PagI	TCATGA	1 cut(s)	1018
PfeI	GAWTC	2 cut(s)	1043, 1283
PflFI	GACNNNGTC	1 cut(s)	705
PkrI	GCNGC	7 cut(s)	52, 184, 226, 310, 756, 1275, 1278
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	22, 583
PpsI	GAGTC	2 cut(s)	22, 583
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	74, 149, 1053
PspPI	GGNCC	4 cut(s)	111, 261, 389, 1131
PspXI	VCTCGAGB	1 cut(s)	1135
PsrI	GAACNNNNNNTAC	2 cut(s)	549, 581
PsuI	RGATCY	2 cut(s)	610, 722
PsyI	GACNNNGTC	1 cut(s)	705
PvuI	CGATCG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	131, 1178
RsaNI	GTAC	2 cut(s)	130, 1177
RseI	CAYNNNNRTG	1 cut(s)	1208
SaqAI	TTAA	4 cut(s)	219, 336, 863, 1330
SatI	GCNGC	7 cut(s)	51, 183, 225, 309, 755, 1274, 1277
Sau3AI	GATC	8 cut(s)	64, 610, 722, 747, 845, 965, 1035, 1110
Sau96I	GGNCC	4 cut(s)	111, 261, 389, 1131
SchI	GAGTC	2 cut(s)	22, 584
SduI	GDGCHC	3 cut(s)	199, 801, 1308
SfaNI	GCATC	7 cut(s)	340, 469, 863, 972, 1146, 1212, 1276
Sfr274I	CTCGAG	3 cut(s)	726, 887, 1135
SinI	GGWCC	2 cut(s)	111, 261
SlaI	CTCGAG	3 cut(s)	726, 887, 1135
SmiMI	CAYNNNNRTG	1 cut(s)	1208
SmlI	CTYRAG	6 cut(s)	218, 540, 726, 887, 1135, 1309
SmoI	CTYRAG	6 cut(s)	218, 540, 726, 887, 1135, 1309
Sse9I	AATT	9 cut(s)	201, 360, 510, 619, 657, 740, 813, 871, 1126
SsiI	CCGC	4 cut(s)	20, 70, 755, 1276
SspMI	CTAG	1 cut(s)	843
StyI	CCWWGG	2 cut(s)	924, 1147
TaaI	ACNGT	3 cut(s)	59, 803, 879
TaiI	ACGT	2 cut(s)	279, 794
TaqI	TCGA	8 cut(s)	88, 122, 340, 727, 834, 888, 1136, 1257
TasI	AATT	9 cut(s)	201, 360, 510, 619, 657, 740, 813, 871, 1126
TauI	GCSGC	2 cut(s)	757, 1279
TfiI	GAWTC	2 cut(s)	1043, 1283
Tru1I	TTAA	4 cut(s)	219, 336, 863, 1330
Tru9I	TTAA	4 cut(s)	219, 336, 863, 1330
TscAI	CASTG	3 cut(s)	882, 953, 1045
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	5 cut(s)	50, 182, 224, 308, 1273
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	333, 353, 612
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	882, 953, 1045
Tth111I	GACNNNGTC	1 cut(s)	705
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	111, 261
XapI	RAATTY	3 cut(s)	201, 619, 740
XceI	RCATGY	3 cut(s)	436, 959, 1007
XhoI	CTCGAG	3 cut(s)	726, 887, 1135
XspI	CTAG	1 cut(s)	843
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.