AT4G19540

NUBPL iron-transfer P-loop NTPase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007258
Physical Location & Seq
Forward (+)
10657289 .. 10659566
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19540.1

Sequence Viewer

Length: 942 bp
ATGGCCACCGTCGCGCTTCTTAGGTCTCTCCGCCGCCGTGAACTCCACGCAGCTCACATCTCTGCATATAAATTCAGTTCTGCTAGCGCCGGCGGGAGGACGACGGAGCTCCGACTACACGGAGTCAAAGATATCATCGCCGTTGCGTCTGGTAAAGGCGGAGTTGGAAAGTCTTCAACAGCTGTAAACTTAGCTGTTGCATTGGCCAACAAATGTGAGCTGAAGATTGGATTGCTTGATGCGGATGTATATGGACCATCTGTTCCTATCATGATGAATATCAATCAAAAGCCTCAAGTTAACCAAGATATGAAGATGATTCCAGTTGAGAACTATGGAGTTAAATGCATGTCAATGGGACTTCTTGTTGAAAAAGATGCACCACTTGTCTGGAGAGGTCCTATGGTAATGAGTGCTCTTGCTAAGATGACAAAAGGAGTTGATTGGGGAGATCTTGATATTCTCGTTGTTGATATGCCACCTGGAACCGGTGATGCTCAAATCTCCATATCCCAAAACCTGAAACTCTCGGGTGCTGTAATTGTATCAACTCCACAAGATGTTGCGCTTGCTGATGCTAATAGAGGAATCTCCATGTTCGACAAAGTTAGAGTACCTATTTTGGGACTTGTAGAGAACATGAGTTGCTTCGTTTGTCCTCACTGTAATGAACCTTCTTTCATATTTGGGAAAGAAGGAGCACGCCGCACTGCTGCAAAGAAGGGTTTGAAACTTATCGGTGAGATTCCACTGGAAATGTCGATAAGAGAAGGTTCTGATGAAGGTGTTCCTGTAGTTGTTTCTTCACCGGGTTCTATAGTGTCAAAAGCTTATCAAGATCTAGCTCAAAACGTGGTGAAAGGACTCAAGGAGCTAAGAGAGAATCCAGATAATGAGATTCAGATGAAGCTAAATGTTCCTCATTCTAGCCACTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

313

Amino Acids

33.43

Weight (kDa)

8.72

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 42 - 285 2.6e-99 NUBPL iron-transfer P-loop NTPase
AAA_31 PF13614 44 - 84 6.4e-07 AAA domain
CbiA PF01656 46 - 264 6.6e-12 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 6 cut(s) 31, 34, 93, 159, 242, 706
AcoI YGGCCR 2 cut(s) 3, 204
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 3 cut(s) 96, 488, 623
AgeI ACCGGT 1 cut(s) 488
AgsI TTSAA 3 cut(s) 177, 371, 730
AjnI CCWGG 1 cut(s) 481
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 9 cut(s) 53, 109, 182, 194, 220, 830, 845, 874, 910
AluI AGCT 9 cut(s) 53, 109, 182, 194, 220, 830, 845, 874, 910
Alw21I GWGCWC 3 cut(s) 111, 418, 703
Alw26I GTCTC 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 2 cut(s) 3, 204
ApeKI GCWGC 2 cut(s) 50, 713
ApoI RAATTY 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 488
Asp700I GAANNNNTTC 2 cut(s) 172, 786
AspLEI GCGC 3 cut(s) 16, 89, 568
AspS9I GGNCC 2 cut(s) 254, 398
AsuC2I CCSGG 1 cut(s) 810
AsuHPI GGTGA 4 cut(s) 503, 752, 798, 868
AsuNHI GCTAGC 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 529
AvaII GGWCC 2 cut(s) 254, 398
BalI TGGCCA 2 cut(s) 5, 206
BanII GRGCYC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 3 cut(s) 111, 418, 703
BbvI GCAGC 2 cut(s) 62, 700
BccI CCATC 1 cut(s) 265
BceAI ACGGC 2 cut(s) 21, 125
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 1 cut(s) 810
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 3 cut(s) 84, 842, 927
BfmI CTRYAG 2 cut(s) 792, 816
BfoI RGCGCY 1 cut(s) 90
BglII AGATCT 2 cut(s) 451, 838
BisI GCNGC 4 cut(s) 34, 51, 706, 714
BlsI GCNGC 4 cut(s) 35, 52, 707, 715
Bme1390I CCNGG 2 cut(s) 483, 810
Bme18I GGWCC 2 cut(s) 254, 398
BmeT110I CYCGRG 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 254, 398
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 2 cut(s) 483, 810
BmsI GCATC 4 cut(s) 229, 367, 484, 565
BmtI GCTAGC 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 412
BpuEI CTTGAG 2 cut(s) 279, 851
BpuMI CCSGG 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 488
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 488, 623
Bse118I RCCGGY 2 cut(s) 89, 488
Bse1I ACTGG 2 cut(s) 323, 756
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 96, 488, 623
BseNI ACTGG 2 cut(s) 323, 756
BseXI GCAGC 2 cut(s) 62, 700
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 5, 206
BshTI ACCGGT 1 cut(s) 488
BsiHKAI GWGCWC 3 cut(s) 111, 418, 703
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 3 cut(s) 90, 489, 809
BslFI GGGAC 2 cut(s) 372, 639
BslI CCNNNNNNNGG 3 cut(s) 96, 488, 623
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 372, 639
BsnI GGCC 2 cut(s) 5, 206
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 111, 418, 703
Bsp143I GATC 2 cut(s) 451, 838
BspACI CCGC 6 cut(s) 31, 34, 93, 159, 242, 706
BspANI GGCC 2 cut(s) 5, 206
BspFNI CGCG 1 cut(s) 14
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 487
BspOI GCTAGC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 2 cut(s) 89, 488
BsrI ACTGG 2 cut(s) 323, 756
BssAI RCCGGY 2 cut(s) 89, 488
BssMI GATC 2 cut(s) 451, 838
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 10, 665
BstC8I GCNNGC 4 cut(s) 85, 91, 570, 703
BstDEI CTNAG 4 cut(s) 20, 190, 423, 875
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 1 cut(s) 14
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 3 cut(s) 16, 89, 568
BstKTI GATC 2 cut(s) 454, 841
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 451, 838
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 352
BstSCI CCNGG 2 cut(s) 481, 808
BstSFI CTRYAG 2 cut(s) 792, 816
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 62, 700
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 451, 838
BstXI CCANNNNNNTGG 1 cut(s) 390
BstYI RGATCY 2 cut(s) 451, 838
BsuRI GGCC 2 cut(s) 5, 206
BtgZI GCGATG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 3 cut(s) 661, 708, 749
Cac8I GCNNGC 4 cut(s) 85, 91, 570, 703
CciI TCATGA 1 cut(s) 270
CfoI GCGC 3 cut(s) 16, 89, 568
Cfr10I RCCGGY 2 cut(s) 89, 488
Cfr13I GGNCC 2 cut(s) 254, 398
CseI GACGC 1 cut(s) 135
Csp6I GTAC 1 cut(s) 614
CspAI ACCGGT 1 cut(s) 488
CviAII CATG 4 cut(s) 271, 349, 595, 640
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 4 cut(s) 20, 190, 423, 875
DpnI GATC 2 cut(s) 453, 840
DpnII GATC 2 cut(s) 451, 838
EaeI YGGCCR 2 cut(s) 3, 204
EciI GGCGGA 2 cut(s) 20, 174
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 30
Eco32I GATATC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 254, 398
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 529
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 4 cut(s) 274, 352, 598, 643
FaqI GGGAC 2 cut(s) 372, 639
FatI CATG 4 cut(s) 270, 348, 594, 639
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 4 cut(s) 34, 51, 706, 714
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 34, 51, 706, 714
FspBI CTAG 3 cut(s) 84, 842, 927
GlaI GCGC 3 cut(s) 15, 88, 567
GluI GCNGC 4 cut(s) 34, 51, 706, 714
GsuI CTGGAG 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 2 cut(s) 5, 206
HapII CCGG 3 cut(s) 90, 489, 809
HgaI GACGC 1 cut(s) 135
HhaI GCGC 3 cut(s) 16, 89, 568
Hin1II CATG 4 cut(s) 274, 352, 598, 643
Hin6I GCGC 3 cut(s) 14, 87, 566
HinP1I GCGC 3 cut(s) 14, 87, 566
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 7 cut(s) 123, 319, 588, 745, 864, 883, 898
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 3 cut(s) 90, 489, 809
HphI GGTGA 4 cut(s) 503, 752, 798, 868
Hpy166II GTNNAC 3 cut(s) 41, 187, 301
Hpy188I TCNGA 3 cut(s) 113, 778, 903
Hpy188III TCNNGA 5 cut(s) 271, 391, 455, 836, 887
Hpy8I GTNNAC 3 cut(s) 41, 187, 301
Hpy99I CGWCG 2 cut(s) 14, 106
HpyAV CCTTC 5 cut(s) 684, 689, 715, 764, 776
HpyCH4III ACNGT 2 cut(s) 10, 665
HpyCH4IV ACGT 1 cut(s) 852
HpyCH4V TGCA 5 cut(s) 65, 200, 348, 380, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 20, 190, 423, 875
HpySE526I ACGT 1 cut(s) 852
Hsp92II CATG 4 cut(s) 274, 352, 598, 643
HspAI GCGC 3 cut(s) 14, 87, 566
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 451, 838
LmnI GCTCC 4 cut(s) 106, 114, 698, 871
Lsp1109I GCAGC 2 cut(s) 62, 700
LweI GCATC 4 cut(s) 229, 367, 484, 565
MaeI CTAG 3 cut(s) 84, 842, 927
MaeII ACGT 1 cut(s) 852
MalI GATC 2 cut(s) 453, 840
MboI GATC 2 cut(s) 451, 838
MboII GAAGA 4 cut(s) 165, 235, 325, 795
MflI RGATCY 2 cut(s) 451, 838
MhlI GDGCHC 3 cut(s) 111, 418, 703
MlsI TGGCCA 2 cut(s) 5, 206
MluCI AATT 2 cut(s) 71, 540
MluNI TGGCCA 2 cut(s) 5, 206
MlyI GAGTC 2 cut(s) 132, 858
MmeI TCCRAC 2 cut(s) 136, 145
MnlI CCTC 6 cut(s) 90, 303, 389, 578, 669, 930
Mox20I TGGCCA 2 cut(s) 5, 206
Mph1103I ATGCAT 1 cut(s) 350
MreI CGCCGGCG 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 89
MroXI GAANNNNTTC 2 cut(s) 172, 786
MscI TGGCCA 2 cut(s) 5, 206
MseI TTAA 2 cut(s) 300, 342
MslI CAYNNNNRTG 2 cut(s) 353, 666
Msp20I TGGCCA 2 cut(s) 5, 206
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 3 cut(s) 90, 489, 809
MspR9I CCNGG 2 cut(s) 483, 810
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 810
NdeII GATC 2 cut(s) 451, 838
NgoMIV GCCGGC 1 cut(s) 89
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 4 cut(s) 274, 352, 598, 643
NlaIV GGNNCC 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 1 cut(s) 352
PagI TCATGA 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 172, 786
PfeI GAWTC 5 cut(s) 319, 588, 745, 883, 898
PinAI ACCGGT 1 cut(s) 488
PkrI GCNGC 4 cut(s) 35, 52, 707, 715
PleI GAGTC 2 cut(s) 131, 858
PpsI GAGTC 2 cut(s) 131, 858
PpuMI RGGWCCY 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 2 cut(s) 254, 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 2 cut(s) 451, 838
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
RseI CAYNNNNRTG 2 cut(s) 353, 666
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 300, 342
SatI GCNGC 4 cut(s) 34, 51, 706, 714
Sau3AI GATC 2 cut(s) 451, 838
Sau96I GGNCC 2 cut(s) 254, 398
SchI GAGTC 2 cut(s) 132, 858
ScrFI CCNGG 2 cut(s) 483, 810
SduI GDGCHC 3 cut(s) 111, 418, 703
SfaNI GCATC 4 cut(s) 229, 367, 484, 565
SfcI CTRYAG 2 cut(s) 792, 816
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 2 cut(s) 254, 398
SmiMI CAYNNNNRTG 2 cut(s) 353, 666
SmlI CTYRAG 2 cut(s) 294, 866
SmoI CTYRAG 2 cut(s) 294, 866
Sse9I AATT 2 cut(s) 71, 540
SsiI CCGC 6 cut(s) 31, 34, 93, 159, 242, 706
SspMI CTAG 3 cut(s) 84, 842, 927
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 481, 808
TaaI ACNGT 2 cut(s) 10, 665
TaiI ACGT 1 cut(s) 855
TaqI TCGA 2 cut(s) 600, 761
TasI AATT 2 cut(s) 71, 540
TauI GCSGC 2 cut(s) 36, 708
TfiI GAWTC 5 cut(s) 319, 588, 745, 883, 898
Tru1I TTAA 2 cut(s) 300, 342
Tru9I TTAA 2 cut(s) 300, 342
TscAI CASTG 3 cut(s) 668, 715, 756
TseI GCWGC 2 cut(s) 50, 713
TspDTI ATGAA 6 cut(s) 290, 326, 670, 684, 795, 920
TspGWI ACGGA 2 cut(s) 119, 135
TspRI CASTG 3 cut(s) 668, 715, 756
VpaK11BI GGWCC 2 cut(s) 254, 398
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 352
XmnI GAANNNNTTC 2 cut(s) 172, 786
XspI CTAG 3 cut(s) 84, 842, 927
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.