Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Reverse (-)

19043624 .. 19045677

Gene Structure 2054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGGCAACTATTGAGGTCCTTAACGACATGCCTCCTTGAACTGGTGATGCTCATATTACTGTATCCCAAAGGCTGCAATTATCAGATTTTGGCAATTGTTGAGAACATGAGCTGTTTAAATGTCCAAACCATGCTGAACGACGGTTCATCTTTGGGGAAGGAGGATCTCACAAGACAGGAGCAAAGATGTAAATACAAGTTGCTGGTGAGCATTCAAGATATAGGTAAAGGTCATGGACACTTGGGTGCTGCAACCGCCATGGGTTGTGATGCTGGTACGAATGTGGCCATGTTGGATAAAGTAATTGAACTTCTGAAAGCTTTGAATTTTAATGATGACGACGAATTTTGGAATGAATTATTTGATGAAGATTTGGGTGTTCAGGGAGTTATGTCTCTCTCAAAATCGGTGAGTAATGGAACTGAATACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

4.7

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	328, 347
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	41, 218, 311, 328
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	114, 323, 435
AluI	AGCT	3 cut(s)	114, 323, 435
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	2 cut(s)	75, 251
ApoI	RAATTY	2 cut(s)	328, 347
AspS9I	GGNCC	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	58, 220, 424
AvaII	GGWCC	1 cut(s)	18
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BalI	TGGCCA	1 cut(s)	290
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvI	GCAGC	2 cut(s)	62, 238
BciVI	GTATCC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	2 cut(s)	76, 252
BlsI	GCNGC	2 cut(s)	77, 253
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmsI	GCATC	2 cut(s)	39, 262
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	62, 238
BshFI	GGCC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	2 cut(s)	63, 146
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	62, 238
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	6 cut(s)	30, 109, 133, 236, 262, 292
CviJI	RGCY	5 cut(s)	75, 114, 290, 323, 435
CviKI_1	RGCY	5 cut(s)	75, 114, 290, 323, 435
CviQI	GTAC	1 cut(s)	279
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	33, 112, 136, 239, 265, 295
FaiI	YATR	9 cut(s)	31, 56, 110, 134, 224, 237, 263, 293, 395
FatI	CATG	6 cut(s)	29, 108, 132, 235, 261, 291
Fnu4HI	GCNGC	2 cut(s)	76, 252
Fsp4HI	GCNGC	2 cut(s)	76, 252
GluI	GCNGC	2 cut(s)	76, 252
HaeIII	GGCC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	33, 112, 136, 239, 265, 295
HindIII	AAGCTT	1 cut(s)	321
HphI	GGTGA	3 cut(s)	58, 220, 424
Hpy188I	TCNGA	2 cut(s)	87, 318
Hpy188III	TCNNGA	1 cut(s)	218
Hpy99I	CGWCG	2 cut(s)	146, 347
HpyAV	CCTTC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	63, 146
HpyCH4V	TGCA	2 cut(s)	78, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
Hsp92II	CATG	6 cut(s)	33, 112, 136, 239, 265, 295
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	5 cut(s)	29, 164, 191, 261, 371
Lsp1109I	GCAGC	2 cut(s)	62, 238
LweI	GCATC	2 cut(s)	39, 262
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	6 cut(s)	79, 96, 306, 328, 347, 359
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	9, 44, 157
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	3 cut(s)	23, 119, 333
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	6 cut(s)	33, 112, 136, 239, 265, 295
NspI	RCATGY	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	246
PctI	GAATGC	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	77, 253
PpuMI	RGGWCCY	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	18
PspPPI	RGGWCCY	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	435
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	23, 119, 333
SatI	GCNGC	2 cut(s)	76, 252
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	18
SetI	ASST	6 cut(s)	20, 116, 229, 235, 325, 437
SfaNI	GCATC	2 cut(s)	39, 262
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	6 cut(s)	79, 96, 306, 328, 347, 359
SsiI	CCGC	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	63, 146
TasI	AATT	6 cut(s)	79, 96, 306, 328, 347, 359
Tru1I	TTAA	3 cut(s)	23, 119, 333
Tru9I	TTAA	3 cut(s)	23, 119, 333
TseI	GCWGC	2 cut(s)	75, 251
TspDTI	ATGAA	3 cut(s)	138, 372, 384
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	2 cut(s)	328, 347
XceI	RCATGY	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.