Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Reverse (-)

32306355 .. 32307136

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATGCTCAAGGATTTCTTTGCTCCGAGCGAGCCCCAAAGAGGCAAGGGAAGGATCTTGACTACGGTCCTGAATACCGAAGATCGTTACCTTTGAACTCAATCAGTCTCACGGTGTCCCTTGAGAGTAGGCCTACCTGGGTTACCACTGCCAACTTGAATTCTGGTCACCTTAGATTTGATCCTCATGCCGAAGACGGTGTTATAAAGAATGTTCGCTACTTCGGTGCTCATTTTGATGCTCACACGTTGATGAAGGCGAACAATGAAGAGGACGGTGACGACAAGTTCCCAGTTGGAGAAGATTTTTACCTAGCCCTTCATAGAATGCTGAAGTGTAAGAAAGACTGGGGTGAAGACTTCTGCTTTCGAGGTCGGGCCGTATTTGCGCATGGCATTCTAGAATGGACGGAAACCACCCTAACTGACTTTGAAGAGACATTAGACAAAGCCGGTATCTTTGGTGCAGTTGCTGTTTCCCGTTATCCGTATGAGTATTGCAGTAATGTGTGGAGGGCATTCTGTGAGCTGTGGGGGGCTTTAACAAACACTTTTCACCATGCAGATGGGGAAATGAGCATCTCTTTGCATGATTTGAATGTTATTGCCATTGTTGAAGAATACAAGTTGAACTTAGAGCTGATGCACTTGGTTGGTTCTCCTCTGAGCTATCCTTTAGTGAGAGTCTCCAATGGGCAGAGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

235

Amino Acids

26.75

Weight (kDa)

5.44

Isoelectric Point (pI)

28.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
Acc16I	TGCGCA	1 cut(s)	390
AclWI	GGATC	2 cut(s)	63, 176
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	6 cut(s)	97, 160, 434, 598, 617, 631
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	3 cut(s)	529, 640, 669
AluI	AGCT	3 cut(s)	529, 640, 669
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	113, 431, 691
AlwI	GGATC	2 cut(s)	63, 176
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	131, 378
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	68, 378
AsuHPI	GGTGA	4 cut(s)	161, 290, 365, 548
AvaII	GGWCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	201, 363
Bbv12I	GWGCWC	1 cut(s)	232
BccI	CCATC	1 cut(s)	560
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	113, 431, 691
BfaI	CTAG	2 cut(s)	314, 401
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	68, 378
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	2 cut(s)	287, 358
BmsI	GCATC	3 cut(s)	229, 588, 633
BmuI	ACTGGG	2 cut(s)	287, 358
BoxI	GACNNNNGTC	1 cut(s)	66
BpiI	GAAGAC	2 cut(s)	201, 363
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	293, 353
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	2 cut(s)	293, 353
BseRI	GAGGAG	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	133, 380
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	3 cut(s)	113, 431, 691
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	3 cut(s)	333, 396, 518
BsnI	GGCC	2 cut(s)	133, 380
Bsp1286I	GDGCHC	2 cut(s)	37, 232
Bsp143I	GATC	3 cut(s)	55, 83, 181
BspANI	GGCC	2 cut(s)	133, 380
BspCNI	CTCAG	1 cut(s)	657
BspPI	GGATC	2 cut(s)	63, 176
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	293, 353
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	55, 83, 181
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	4 cut(s)	68, 115, 200, 278
Bst6I	CTCTTC	2 cut(s)	264, 429
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	3 cut(s)	173, 634, 665
BstEII	GGTNACC	2 cut(s)	142, 167
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	3 cut(s)	58, 86, 184
BstMAI	GTCTC	3 cut(s)	113, 431, 691
BstMBI	GATC	3 cut(s)	55, 83, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	139
BstPAI	GACNNNNGTC	1 cut(s)	66
BstPI	GGTNACC	2 cut(s)	142, 167
BstSCI	CCNGG	1 cut(s)	137
BstV2I	GAAGAC	2 cut(s)	201, 363
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	133, 380
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	68, 378
CviAII	CATG	4 cut(s)	188, 392, 560, 590
CviJI	RGCY	9 cut(s)	35, 133, 317, 380, 452, 529, 539, 640, 669
CviKI_1	RGCY	9 cut(s)	35, 133, 317, 380, 452, 529, 539, 640, 669
DdeI	CTNAG	3 cut(s)	173, 634, 665
DpnI	GATC	3 cut(s)	57, 85, 183
DpnII	GATC	3 cut(s)	55, 83, 181
Eam1104I	CTCTTC	2 cut(s)	264, 429
EarI	CTCTTC	2 cut(s)	264, 429
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	353
Eco91I	GGTNACC	2 cut(s)	142, 167
EcoO65I	GGTNACC	2 cut(s)	142, 167
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	4 cut(s)	191, 395, 563, 593
FaiI	YATR	8 cut(s)	189, 206, 324, 393, 492, 561, 591, 706
FalI	AAGNNNNNCTT	3 cut(s)	35, 617, 649
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	187, 391, 559, 589
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	37
FspBI	CTAG	2 cut(s)	314, 401
FspI	TGCGCA	1 cut(s)	390
GlaI	GCGC	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	133, 380
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	191, 395, 563, 593
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	684
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	4 cut(s)	161, 290, 365, 548
Hpy188I	TCNGA	2 cut(s)	28, 666
Hpy188III	TCNNGA	3 cut(s)	59, 71, 401
HpyAV	CCTTC	3 cut(s)	46, 250, 329
HpyCH4III	ACNGT	4 cut(s)	68, 115, 200, 278
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	467, 501, 563, 589, 646
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	3 cut(s)	173, 634, 665
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	4 cut(s)	191, 395, 563, 593
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	3 cut(s)	55, 83, 181
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	7 cut(s)	84, 124, 150, 151, 306, 334, 466
LweI	GCATC	3 cut(s)	229, 588, 633
MaeI	CTAG	2 cut(s)	314, 401
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	4 cut(s)	87, 142, 167, 278
MalI	GATC	3 cut(s)	57, 85, 183
MboI	GATC	3 cut(s)	55, 83, 181
MboII	GAAGA	7 cut(s)	93, 206, 281, 314, 368, 446, 629
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	37, 232
MluCI	AATT	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	7 cut(s)	36, 195, 265, 365, 507, 672, 693
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	3 cut(s)	237, 251, 564
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	3 cut(s)	333, 396, 518
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	386
NdeII	GATC	3 cut(s)	55, 83, 181
NlaIII	CATG	4 cut(s)	191, 395, 563, 593
NmuCI	GTSAC	2 cut(s)	167, 278
NsbI	TGCGCA	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	133
PctI	GAATGC	3 cut(s)	333, 396, 518
PleI	GAGTC	1 cut(s)	692
PpsI	GAGTC	1 cut(s)	692
PshAI	GACNNNNGTC	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	137
PspEI	GGTNACC	2 cut(s)	142, 167
PspGI	CCWGG	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	68, 378
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	3 cut(s)	237, 251, 564
SaqAI	TTAA	1 cut(s)	542
Sau3AI	GATC	3 cut(s)	55, 83, 181
Sau96I	GGNCC	2 cut(s)	68, 378
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	37, 232
SfaNI	GCATC	3 cut(s)	229, 588, 633
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	3 cut(s)	237, 251, 564
SmlI	CTYRAG	2 cut(s)	9, 122
SmoI	CTYRAG	2 cut(s)	9, 122
Sse9I	AATT	1 cut(s)	160
SseBI	AGGCCT	1 cut(s)	133
SspMI	CTAG	2 cut(s)	314, 401
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	4 cut(s)	68, 115, 200, 278
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	370
TasI	AATT	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	167, 278
Tsp45I	GTSAC	2 cut(s)	167, 278
TspDTI	ATGAA	3 cut(s)	269, 282, 311
TspGWI	ACGGA	2 cut(s)	425, 477
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	400
XspI	CTAG	2 cut(s)	314, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.