RchiOBHm_Chr6g0289151

Iron-sulfur protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0007258
Physical Location & Seq
Forward (+)
52326446 .. 52329677
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25940

Sequence Viewer

Length: 876 bp
ATGAGGCAACTACTAAGGTCCTTCACGAGACTCGGAGGTGTTAGGAGTTACAGCGCGGTGAAAAAGGACCTTCGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAGGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCGATCATGATGAAGCTCGAAGGAAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCAATTGGACTTCTTGTCGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACAGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAACTGGGCATCAGAAAGGGCTCTGATGATGGTGTCCCAATAGTAATATCGGCTCCTGATTCTGATGTCTCCAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGCAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

291

Amino Acids

31.26

Weight (kDa)

8.51

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 29 - 272 2.7e-100 NUBPL iron-transfer P-loop NTPase
MipZ PF09140 31 - 91 1.8e-07 ATPase MipZ
AAA_31 PF13614 32 - 70 1.1e-08 AAA domain
CbiA PF01656 33 - 200 9e-14 CobQ/CobB/MinD/ParA nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 432
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 56, 120
AclWI GGATC 1 cut(s) 667
AfiI CCNNNNNNNGG 2 cut(s) 449, 584
AgsI TTSAA 3 cut(s) 383, 510, 572
AhdI GACNNNNNGTC 1 cut(s) 326
AjiI CACGTC 1 cut(s) 857
AjnI CCWGG 1 cut(s) 442
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 4 cut(s) 101, 241, 294, 606
AluI AGCT 4 cut(s) 101, 241, 294, 606
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 22, 787
AlwI GGATC 1 cut(s) 667
ApeKI GCWGC 2 cut(s) 481, 674
AseI ATTAAT 1 cut(s) 552
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 4 cut(s) 18, 67, 215, 359
AsuHPI GGTGA 3 cut(s) 70, 464, 713
AvaII GGWCC 4 cut(s) 18, 67, 215, 359
BanII GRGCYC 1 cut(s) 737
BauI CACGAG 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 468, 686
BccI CCATC 3 cut(s) 630, 676, 737
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 22, 787
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 482, 675
BlsI GCNGC 2 cut(s) 483, 676
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 4 cut(s) 18, 67, 215, 359
BmeRI GACNNNNNGTC 1 cut(s) 326
BmgBI CACGTC 1 cut(s) 857
BmgT120I GGNCC 4 cut(s) 18, 67, 215, 359
BmiI GGNNCC 1 cut(s) 768
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 2 cut(s) 415, 728
BmsI GCATC 5 cut(s) 190, 328, 445, 526, 732
BmuI ACTGGG 2 cut(s) 415, 728
BpuEI CTTGAG 2 cut(s) 501, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 584
Bse1I ACTGG 3 cut(s) 410, 454, 723
BseBI CCWGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 343, 541
BseLI CCNNNNNNNGG 2 cut(s) 449, 584
BseMII CTCAG 2 cut(s) 821, 852
BseNI ACTGG 3 cut(s) 410, 454, 723
BseXI GCAGC 2 cut(s) 468, 686
Bsh1236I CGCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 2 cut(s) 449, 584
BsmAI GTCTC 2 cut(s) 22, 787
BsmFI GGGAC 1 cut(s) 734
Bsp1286I GDGCHC 2 cut(s) 379, 737
Bsp143I GATC 2 cut(s) 228, 659
BspACI CCGC 2 cut(s) 56, 120
BspCNI CTCAG 2 cut(s) 820, 853
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 768
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 667
BsrI ACTGG 3 cut(s) 410, 454, 723
BssMI GATC 2 cut(s) 228, 659
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 469, 626
BstC8I GCNNGC 3 cut(s) 93, 194, 541
BstDEI CTNAG 3 cut(s) 14, 807, 861
BstF5I GGATG 2 cut(s) 343, 541
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 231, 662
BstMAI GTCTC 2 cut(s) 22, 787
BstMBI GATC 2 cut(s) 228, 659
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 2 cut(s) 95, 439
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 468, 686
BstX2I RGATCY 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 1 cut(s) 659
BsuI GTATCC 1 cut(s) 481
BtrI CACGTC 1 cut(s) 857
BtsCI GGATG 2 cut(s) 343, 541
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 447
Cac8I GCNNGC 3 cut(s) 93, 194, 541
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 4 cut(s) 18, 67, 215, 359
CviAII CATG 4 cut(s) 92, 232, 436, 601
DdeI CTNAG 3 cut(s) 14, 807, 861
DpnI GATC 2 cut(s) 230, 661
DpnII GATC 2 cut(s) 228, 659
DriI GACNNNNNGTC 1 cut(s) 326
Eam1105I GACNNNNNGTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 737
Eco47I GGWCC 4 cut(s) 18, 67, 215, 359
EcoO109I RGGNCCY 3 cut(s) 18, 67, 359
EcoRII CCWGG 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 737
FaeI CATG 4 cut(s) 95, 235, 439, 604
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 1 cut(s) 734
FatI CATG 4 cut(s) 91, 231, 435, 600
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 482, 675
FokI GGATG 2 cut(s) 350, 548
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 2 cut(s) 482, 675
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 482, 675
HhaI GCGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 95, 235, 439, 604
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 4 cut(s) 30, 280, 300, 773
HphI GGTGA 3 cut(s) 70, 464, 713
Hpy166II GTNNAC 3 cut(s) 135, 403, 433
Hpy188I TCNGA 7 cut(s) 35, 75, 228, 728, 739, 778, 810
Hpy188III TCNNGA 7 cut(s) 25, 232, 380, 416, 518, 770, 860
Hpy8I GTNNAC 3 cut(s) 135, 403, 433
HpyAV CCTTC 5 cut(s) 31, 80, 178, 239, 647
HpyCH4III ACNGT 2 cut(s) 469, 626
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 6 cut(s) 143, 161, 341, 484, 497, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 3 cut(s) 14, 807, 861
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 4 cut(s) 95, 235, 439, 604
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 228, 659
LmnI GCTCC 1 cut(s) 772
Lsp1109I GCAGC 2 cut(s) 468, 686
LweI GCATC 5 cut(s) 190, 328, 445, 526, 732
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 2 cut(s) 47, 259
MalI GATC 2 cut(s) 230, 661
MboI GATC 2 cut(s) 228, 659
MfeI CAATTG 1 cut(s) 315
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 2 cut(s) 379, 737
MluCI AATT 4 cut(s) 315, 485, 549, 833
MlyI GAGTC 1 cut(s) 24
MnlI CCTC 9 cut(s) 29, 73, 350, 450, 525, 539, 650, 793, 823
MseI TTAA 4 cut(s) 87, 147, 552, 612
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 2 cut(s) 228, 659
NlaIII CATG 4 cut(s) 95, 235, 439, 604
NlaIV GGNNCC 1 cut(s) 768
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 2 cut(s) 95, 439
PaeI GCATGC 1 cut(s) 95
PagI TCATGA 1 cut(s) 231
PfeI GAWTC 3 cut(s) 280, 300, 773
PkrI GCNGC 2 cut(s) 483, 676
PleI GAGTC 1 cut(s) 24
PpsI GAGTC 1 cut(s) 24
PpuMI RGGWCCY 3 cut(s) 18, 67, 359
PshBI ATTAAT 1 cut(s) 552
Psp5II RGGWCCY 3 cut(s) 18, 67, 359
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 768
PspPI GGNCC 4 cut(s) 18, 67, 215, 359
PspPPI RGGWCCY 3 cut(s) 18, 67, 359
PstI CTGCAG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 659
SaqAI TTAA 4 cut(s) 87, 147, 552, 612
SatI GCNGC 2 cut(s) 482, 675
Sau3AI GATC 2 cut(s) 228, 659
Sau96I GGNCC 4 cut(s) 18, 67, 215, 359
SchI GAGTC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 379, 737
SfaNI GCATC 5 cut(s) 190, 328, 445, 526, 732
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 4 cut(s) 18, 67, 215, 359
SmlI CTYRAG 2 cut(s) 516, 827
SmoI CTYRAG 2 cut(s) 516, 827
SphI GCATGC 1 cut(s) 95
Sse9I AATT 4 cut(s) 315, 485, 549, 833
SsiI CCGC 2 cut(s) 56, 120
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 469, 626
TaiI ACGT 1 cut(s) 859
TaqI TCGA 2 cut(s) 243, 330
TasI AATT 4 cut(s) 315, 485, 549, 833
TfiI GAWTC 3 cut(s) 280, 300, 773
Tru1I TTAA 4 cut(s) 87, 147, 552, 612
Tru9I TTAA 4 cut(s) 87, 147, 552, 612
TscAI CASTG 2 cut(s) 145, 454
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 481, 674
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 3 cut(s) 197, 251, 631
TspRI CASTG 2 cut(s) 145, 454
VpaK11BI GGWCC 4 cut(s) 18, 67, 215, 359
VspI ATTAAT 1 cut(s) 552
XceI RCATGY 2 cut(s) 95, 439
XmiI GTMKAC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.