Rh6BG320500

pfkB family carbohydrate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0007258
Physical Location & Seq
Reverse (-)
55160160 .. 55167074
6915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG320500.1

Sequence Viewer

Length: 261 bp
ATGTCGGTTACAACTGTATCCCAAATGCTGCAATTATCAGGTCCTTTGATTGTTTCTACTCCCCAACATGTTGCACTAATGGATGTTCGCAGAAGAATTAATATGTTCTCTAAAGTTGAAGTCCCGATTTTGGCAATTGTTGAGAACATGAGCTGTTTAAGTGTCCAAGCCGTGCTGAACGATGGTTTGTCTTTGGGGAAGGAGGATCTCATAAGACAAGGGCAGAGATGGGATTACAAGCTGCTGGTGAGATACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PfkB

Protein Analysis

86

Amino Acids

9.74

Weight (kDa)

9.03

Isoelectric Point (pI)

57.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 5 - 57 5.3e-16 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 2 cut(s) 153, 241
AluI AGCT 2 cut(s) 153, 241
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 28, 241
AseI ATTAAT 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 1 cut(s) 41
BaeI ACNNNNGTAYC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 15, 228
BccI CCATC 2 cut(s) 176, 222
BceAI ACGGC 1 cut(s) 155
BciVI GTATCC 1 cut(s) 28
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 29, 242
BlsI GCNGC 2 cut(s) 30, 243
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 15, 228
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 205
BspPI GGATC 1 cut(s) 213
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 16
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 15, 228
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 41
CviAII CATG 2 cut(s) 68, 148
CviJI RGCY 3 cut(s) 153, 170, 241
CviKI_1 RGCY 3 cut(s) 153, 170, 241
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 41
FaeI CATG 2 cut(s) 71, 151
FaiI YATR 4 cut(s) 69, 104, 149, 212
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 67, 147
Fnu4HI GCNGC 2 cut(s) 29, 242
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 29, 242
GluI GCNGC 2 cut(s) 29, 242
Hin1II CATG 2 cut(s) 71, 151
HphI GGTGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 31, 74
Hsp92II CATG 2 cut(s) 71, 151
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 24, 230
Lsp1109I GCAGC 2 cut(s) 15, 228
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 105
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 205
MluCI AATT 3 cut(s) 32, 96, 135
MnlI CCTC 1 cut(s) 196
MseI TTAA 2 cut(s) 99, 158
MunI CAATTG 1 cut(s) 135
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 71, 151
NspI RCATGY 1 cut(s) 71
PciI ACATGT 1 cut(s) 67
PkrI GCNGC 2 cut(s) 30, 243
PpuMI RGGWCCY 1 cut(s) 41
PscI ACATGT 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 99
Psp5II RGGWCCY 1 cut(s) 41
PspPI GGNCC 1 cut(s) 41
PspPPI RGGWCCY 1 cut(s) 41
PsuI RGATCY 1 cut(s) 205
SaqAI TTAA 2 cut(s) 99, 158
SatI GCNGC 2 cut(s) 29, 242
Sau3AI GATC 1 cut(s) 205
Sau96I GGNCC 1 cut(s) 41
SetI ASST 3 cut(s) 43, 155, 243
SgeI CNNG 9 cut(s) 51, 80, 136, 160, 179, 184, 230, 250, 257
SinI GGWCC 1 cut(s) 41
Sse9I AATT 3 cut(s) 32, 96, 135
TaaI ACNGT 1 cut(s) 16
TasI AATT 3 cut(s) 32, 96, 135
Tru1I TTAA 2 cut(s) 99, 158
Tru9I TTAA 2 cut(s) 99, 158
TseI GCWGC 2 cut(s) 28, 241
VpaK11BI GGWCC 1 cut(s) 41
VspI ATTAAT 1 cut(s) 99
XceI RCATGY 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.