Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Forward (+)

21924613 .. 21928460

Gene Structure 3848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGGGGACTGCTCAAATCCTTAACTAGGGTTGGAGGAGGTGTTAGGGGTTATAGCTCGGCGAGGAAGGACCTTCGGATTCAGGGGGTTAAGCATGCCATTGCTGTCGCTTCTGGTAAAGGCGGTGTGGGAAAGTCCACCACCGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGCCAGATGAAGGTTGGCTTGCTTGATGCTGACATATATGGACCAAATGTTCCTATAATGATGAAGCTCGACAGAAAGCCAGAAGTGACTGATGATAAAAAAATGATTCCAATCGAGAGCTATGGAGTCAAGTGTATGTCAATGGGACTTCTTGTGGATAAGGATGCCCCACTTGTTTGGAGAGGTCCTATGGTATCGAGCGCTCTTGAAAAAATGACTAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGATATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCAGGTGCATTGATTGTTTCAACGCCTCAAGATGTAGCATTAATGGATGCCCGTAGAGGAATTAACATGTTCTCTAAAGTCGAAGTTCCTATTTTGGGAATTGTAGAGAACATGAGCTATTTTAAGTGTCCACACTGTGCCGAATGTTCGTTCATTTTTGGGGAAGGAGGATCTCGTAAGACAGCAACTGAGATGGATTTGGACTTTGTTGGCGAGATACCGTTGGAAGTAGGGATCAGAAAAGGCTCCGACAACGGCGTGCCAATAGTAATATCAGCTCCTGATTCTGATGTCTCGAAAGCATATGTGGATGTGGCTTGGAAAGTTGTAGACAGATTGGCAAAGGAAGAACAATCCCGTCCACAGATTTCCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

290

Amino Acids

31.04

Weight (kDa)

8.51

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	822
AciI	CCGC	2 cut(s)	123, 144
AclWI	GGATC	2 cut(s)	670, 734
AdeI	CACNNNGTG	1 cut(s)	629
AfeI	AGCGCT	1 cut(s)	379
AfiI	CCNNNNNNNGG	4 cut(s)	27, 187, 452, 587
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	386, 513
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	5 cut(s)	57, 244, 297, 609, 770
AluI	AGCT	5 cut(s)	57, 244, 297, 609, 770
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	2 cut(s)	670, 734
AlwNI	CAGNNNCTG	2 cut(s)	680, 773
Aor51HI	AGCGCT	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	484
AseI	ATTAAT	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	3 cut(s)	70, 218, 362
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	3 cut(s)	70, 218, 362
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	679
BceAI	ACGGC	1 cut(s)	763
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	484
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	2 cut(s)	27, 396
BfoI	RGCGCY	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	3 cut(s)	70, 218, 362
BmgT120I	GGNCC	3 cut(s)	70, 218, 362
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	4 cut(s)	193, 331, 448, 529
BmuI	ACTGGG	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 187, 452, 587
Bse1I	ACTGG	2 cut(s)	413, 457
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	346, 544, 808
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	4 cut(s)	27, 187, 452, 587
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	2 cut(s)	413, 457
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	471
BslFI	GGGAC	2 cut(s)	21, 336
BslI	CCNNNNNNNGG	4 cut(s)	27, 187, 452, 587
BsmAI	GTCTC	1 cut(s)	790
BsmFI	GGGAC	2 cut(s)	21, 336
Bsp143I	GATC	2 cut(s)	662, 726
BspACI	CCGC	2 cut(s)	123, 144
BspCNI	CTCAG	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	2 cut(s)	670, 734
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	413, 457
BssMI	GATC	2 cut(s)	662, 726
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	472, 629, 714
BstC8I	GCNNGC	3 cut(s)	96, 197, 752
BstDEI	CTNAG	1 cut(s)	681
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	346, 544, 808
BstH2I	RGCGCY	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	665, 729
BstMAI	GTCTC	1 cut(s)	790
BstMBI	GATC	2 cut(s)	662, 726
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	98, 562
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	346, 544, 808
BtsIMutI	CAGTG	2 cut(s)	450, 625
Cac8I	GCNNGC	3 cut(s)	96, 197, 752
CaiI	CAGNNNCTG	2 cut(s)	680, 773
CfoI	GCGC	1 cut(s)	380
Cfr13I	GGNCC	3 cut(s)	70, 218, 362
CviAII	CATG	3 cut(s)	95, 559, 604
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	2 cut(s)	664, 728
DpnII	GATC	2 cut(s)	662, 726
DraIII	CACNNNGTG	1 cut(s)	629
Eco47I	GGWCC	3 cut(s)	70, 218, 362
Eco47III	AGCGCT	1 cut(s)	379
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoO109I	RGGNCCY	2 cut(s)	70, 362
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	98, 562, 607
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	2 cut(s)	21, 336
FatI	CATG	3 cut(s)	94, 558, 603
FauNDI	CATATG	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	822
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	3 cut(s)	353, 551, 815
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	2 cut(s)	27, 396
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	381
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	3 cut(s)	98, 562, 607
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	4 cut(s)	79, 283, 303, 776
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	5 cut(s)	138, 406, 623, 823, 854
Hpy188I	TCNGA	4 cut(s)	78, 731, 742, 781
Hpy188III	TCNNGA	6 cut(s)	292, 383, 419, 521, 773, 787
Hpy8I	GTNNAC	5 cut(s)	138, 406, 623, 823, 854
HpyAV	CCTTC	4 cut(s)	61, 83, 181, 650
HpyCH4III	ACNGT	3 cut(s)	472, 629, 714
HpyCH4V	TGCA	3 cut(s)	164, 487, 500
HpyF3I	CTNAG	1 cut(s)	681
Hsp92II	CATG	3 cut(s)	98, 562, 607
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	2 cut(s)	662, 726
LmnI	GCTCC	2 cut(s)	743, 775
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	4 cut(s)	193, 331, 448, 529
MaeI	CTAG	2 cut(s)	27, 396
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	664, 728
MboI	GATC	2 cut(s)	662, 726
MboII	GAAGA	1 cut(s)	851
MflI	RGATCY	1 cut(s)	662
MluCI	AATT	3 cut(s)	488, 552, 591
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	3 cut(s)	13, 696, 765
MnlI	CCTC	8 cut(s)	29, 32, 57, 353, 453, 528, 542, 653
MseI	TTAA	7 cut(s)	23, 90, 150, 533, 555, 615, 868
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	2 cut(s)	662, 726
NlaIII	CATG	3 cut(s)	98, 562, 607
NlaIV	GGNNCC	1 cut(s)	739
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	2 cut(s)	98, 562
PaeI	GCATGC	1 cut(s)	98
PciI	ACATGT	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	79, 283, 776
PkrI	GCNGC	1 cut(s)	486
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PpuMI	RGGWCCY	2 cut(s)	70, 362
PscI	ACATGT	1 cut(s)	558
PshBI	ATTAAT	1 cut(s)	533
Psp5II	RGGWCCY	2 cut(s)	70, 362
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	3 cut(s)	70, 218, 362
PspPPI	RGGWCCY	2 cut(s)	70, 362
PstNI	CAGNNNCTG	2 cut(s)	680, 773
PsuI	RGATCY	1 cut(s)	662
SaqAI	TTAA	7 cut(s)	23, 90, 150, 533, 555, 615, 868
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	2 cut(s)	662, 726
Sau96I	GGNCC	3 cut(s)	70, 218, 362
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	447
SfaNI	GCATC	4 cut(s)	193, 331, 448, 529
SinI	GGWCC	3 cut(s)	70, 218, 362
SmlI	CTYRAG	1 cut(s)	519
SmoI	CTYRAG	1 cut(s)	519
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	3 cut(s)	488, 552, 591
SsiI	CCGC	2 cut(s)	123, 144
SspMI	CTAG	2 cut(s)	27, 396
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	3 cut(s)	472, 629, 714
TaqI	TCGA	5 cut(s)	246, 291, 374, 573, 788
TasI	AATT	3 cut(s)	488, 552, 591
TfiI	GAWTC	3 cut(s)	79, 283, 776
Tru1I	TTAA	7 cut(s)	23, 90, 150, 533, 555, 615, 868
Tru9I	TTAA	7 cut(s)	23, 90, 150, 533, 555, 615, 868
TscAI	CASTG	2 cut(s)	457, 632
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	200, 254, 634
TspRI	CASTG	2 cut(s)	457, 632
VpaK11BI	GGWCC	3 cut(s)	70, 218, 362
VspI	ATTAAT	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	25
XceI	RCATGY	2 cut(s)	98, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	822
XspI	CTAG	2 cut(s)	27, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.