Prupe.8G229700_v2.0.a1

Iron-sulfur protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007258
Physical Location & Seq
Forward (+)
20527683 .. 20532213
4531 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G229700.2

Sequence Viewer

Length: 876 bp
ATGAAGGAGCTACTGAGGTCGTTCACTAAGCTTGGAGGTGTTAGGGGTTATAGCGCGGGGAGGAAAGACCTTCGGATTAAGGGGGTTAAGCATACCATAGCCGTTGCTTCTGGTAAAGGGGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTCAAATGAAGGTTGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCAATCATGATGAAGCTCGACAAAATGCCAGAAGTGAATGAAGATAAAAAAATGGTTCCAATTGAGAGCTATGGAGTCAAGTGTATGTCGATGGGACTTCTTGTGGCCAAGGATGCCTCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAACAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATGTTCTTGTGGTAGATATGCCCCCTGGGACTGGTGATGCTCATATTACTGTATCCCAAAGGCTGCAGTTATCAGGTGCATTAATTGTTTCAACACCTCAAGATGTTGCATTAATGGATGCTCGGAGAGGAATTAACATGTTCTCTAAAGTCGAAGTTCCGATTTTGGGAATTGTAGAGAACATGAGCTGTTTTAAATGTCCAAACTGTGCTGAACGCTGGTTCATTTTTGGGGAAGGAGGGTCTCGTAAGACGGCCGCTGAGATGGGTGTGGATTTTGCTGGCGAGATACCATTAGAAGTGGGGATAAGACAAGGCTCCGACGACGGTGTCCCAATAGTAATATCGGCACCTGATTCTGATGTCTCCAAAGCATATGTTGATATGGCTCAGAAAGTTGTCGACAGACTTGAGGAATTGTCAAAGGAAGAACAATCTCGTCCACAGTTTAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

292

Amino Acids

31.35

Weight (kDa)

6.75

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 746
AccB1I GGYRCC 1 cut(s) 766
AccI GTMKAC 1 cut(s) 819
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 56, 675
AcoI YGGCCR 2 cut(s) 330, 672
AfiI CCNNNNNNNGG 2 cut(s) 449, 584
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 2 cut(s) 383, 510
AjnI CCWGG 1 cut(s) 442
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 5 cut(s) 10, 31, 241, 294, 606
AluI AGCT 5 cut(s) 10, 31, 241, 294, 606
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 666, 787
AoxI GGCC 2 cut(s) 330, 672
ApeKI GCWGC 1 cut(s) 481
AseI ATTAAT 2 cut(s) 500, 530
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 215, 359
AsuHPI GGTGA 1 cut(s) 464
AvaII GGWCC 2 cut(s) 215, 359
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 1 cut(s) 766
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 310, 676
BceAI ACGGC 2 cut(s) 86, 687
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 2 cut(s) 666, 787
BfmI CTRYAG 2 cut(s) 141, 482
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 482, 675
BlsI GCNGC 2 cut(s) 483, 676
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 2 cut(s) 215, 359
BmgT120I GGNCC 2 cut(s) 215, 359
BmiI GGNNCC 3 cut(s) 282, 736, 768
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 4 cut(s) 190, 328, 445, 526
BmuI ACTGGG 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 501, 848
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 3 cut(s) 333, 442, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 584
Bse1I ACTGG 2 cut(s) 410, 454
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 3 cut(s) 333, 442, 443
BseGI GGATG 2 cut(s) 343, 541
BseLI CCNNNNNNNGG 2 cut(s) 449, 584
BseMII CTCAG 3 cut(s) 5, 669, 821
BseNI ACTGG 2 cut(s) 410, 454
BseX3I CGGCCG 1 cut(s) 672
BseXI GCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 2 cut(s) 332, 674
BshNI GGYRCC 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 3 cut(s) 333, 460, 734
BslI CCNNNNNNNGG 2 cut(s) 449, 584
BsmAI GTCTC 2 cut(s) 666, 787
BsmFI GGGAC 3 cut(s) 333, 460, 734
BsnI GGCC 2 cut(s) 332, 674
Bso31I GGTCTC 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 379
BspACI CCGC 2 cut(s) 56, 675
BspANI GGCC 2 cut(s) 332, 674
BspCNI CTCAG 3 cut(s) 6, 670, 820
BspFNI CGCG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 282, 736, 768
BspMAI CTGCAG 2 cut(s) 145, 486
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 666
BsrI ACTGG 2 cut(s) 410, 454
BssECI CCNNGG 3 cut(s) 333, 442, 443
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 4 cut(s) 469, 626, 746, 864
BstC8I GCNNGC 2 cut(s) 194, 700
BstDEI CTNAG 4 cut(s) 14, 27, 678, 807
BstF5I GGATG 2 cut(s) 343, 541
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 666, 787
BstMCI CGRYCG 1 cut(s) 675
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 2 cut(s) 141, 482
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 468
BstZI CGGCCG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 332, 674
BtsCI GGATG 2 cut(s) 343, 541
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 194, 700
CciI TCATGA 1 cut(s) 231
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 215, 359
CviAII CATG 3 cut(s) 232, 556, 601
DdeI CTNAG 4 cut(s) 14, 27, 678, 807
DraI TTTAAA 1 cut(s) 613
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 2 cut(s) 330, 672
EagI CGGCCG 1 cut(s) 672
EclXI CGGCCG 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 2 cut(s) 215, 359
Eco52I CGGCCG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 359
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 3 cut(s) 235, 559, 604
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 3 cut(s) 333, 460, 734
FatI CATG 3 cut(s) 231, 555, 600
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 2 cut(s) 482, 675
FokI GGATG 2 cut(s) 350, 548
Fsp4HI GCNGC 2 cut(s) 482, 675
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 482, 675
HaeIII GGCC 2 cut(s) 332, 674
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 235, 559, 604
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 2 cut(s) 403, 820
HindII GTYRAC 2 cut(s) 403, 820
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 300, 773
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 5 cut(s) 24, 135, 403, 820, 860
Hpy188I TCNGA 6 cut(s) 75, 543, 579, 739, 778, 810
Hpy188III TCNNGA 4 cut(s) 232, 380, 416, 518
Hpy8I GTNNAC 5 cut(s) 24, 135, 403, 820, 860
Hpy99I CGWCG 2 cut(s) 743, 746
HpyAV CCTTC 3 cut(s) 80, 178, 647
HpyCH4III ACNGT 4 cut(s) 469, 626, 746, 864
HpyCH4V TGCA 5 cut(s) 143, 161, 484, 497, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 4 cut(s) 14, 27, 678, 807
Hsp92II CATG 3 cut(s) 235, 559, 604
HspAI GCGC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 7, 740
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 4 cut(s) 190, 328, 445, 526
MboII GAAGA 2 cut(s) 278, 857
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 379
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 5 cut(s) 285, 501, 549, 588, 833
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 762
MnlI CCTC 9 cut(s) 9, 29, 54, 350, 352, 525, 539, 650, 823
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 8 cut(s) 78, 87, 147, 500, 530, 552, 612, 867
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 444
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeI CATATG 1 cut(s) 793
NlaIII CATG 3 cut(s) 235, 559, 604
NlaIV GGNNCC 3 cut(s) 282, 736, 768
NspI RCATGY 1 cut(s) 559
PagI TCATGA 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 443
PciI ACATGT 1 cut(s) 555
PfeI GAWTC 1 cut(s) 773
PflFI GACNNNGTC 1 cut(s) 746
PkrI GCNGC 2 cut(s) 483, 676
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PpuMI RGGWCCY 1 cut(s) 359
PscI ACATGT 1 cut(s) 555
PshBI ATTAAT 2 cut(s) 500, 530
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 282, 736, 768
PspPI GGNCC 2 cut(s) 215, 359
PspPPI RGGWCCY 1 cut(s) 359
PstI CTGCAG 2 cut(s) 145, 486
PsyI GACNNNGTC 1 cut(s) 746
SalI GTCGAC 1 cut(s) 818
SaqAI TTAA 8 cut(s) 78, 87, 147, 500, 530, 552, 612, 867
SatI GCNGC 2 cut(s) 482, 675
Sau96I GGNCC 2 cut(s) 215, 359
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 4 cut(s) 190, 328, 445, 526
SfcI CTRYAG 2 cut(s) 141, 482
SinI GGWCC 2 cut(s) 215, 359
SmlI CTYRAG 2 cut(s) 516, 827
SmoI CTYRAG 2 cut(s) 516, 827
Sse9I AATT 5 cut(s) 285, 501, 549, 588, 833
SsiI CCGC 2 cut(s) 56, 675
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 469, 626, 746, 864
TaqI TCGA 4 cut(s) 243, 314, 570, 819
TasI AATT 5 cut(s) 285, 501, 549, 588, 833
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 1 cut(s) 773
Tru1I TTAA 8 cut(s) 78, 87, 147, 500, 530, 552, 612, 867
Tru9I TTAA 8 cut(s) 78, 87, 147, 500, 530, 552, 612, 867
TscAI CASTG 1 cut(s) 145
TseI GCWGC 1 cut(s) 481
TspDTI ATGAA 5 cut(s) 17, 197, 251, 279, 631
TspRI CASTG 1 cut(s) 145
Tth111I GACNNNGTC 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 215, 359
VspI ATTAAT 2 cut(s) 500, 530
XceI RCATGY 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.