Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Forward (+)

51305353 .. 51308797

Gene Structure 3445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG325800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGGCAACTACTAAGGTCCTTCACGAGACTCGGAGGTGTTAGGAGTTACAGCGCGGTGAAAAAGGACCTTCGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAGGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCGATCATGATGAAGCTCGAAGGAAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCAATTGGACTTCTTGTCGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACAGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGGTAGGTCATTTCTTATTTTGTTTGATCTGTTTTATGAGTACTTACTGTAATAACTGTGCATACTTCCTGTTGAAGTTGATTCAGTTCCTTTTGGGTCTAGATGCTTCTCTTATCTCTCTATCTCTCTCAATTTCCCTTTTAAGGAAAGTCTTTAGTTATTTGATTTTGAGTATAAAGGACAAGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

298

Amino Acids

32.39

Weight (kDa)

9.16

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	29 - 236	4.3e-90	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	31 - 91	1.9e-07	ATPase MipZ
AAA_31	PF13614	32 - 70	5.6e-09	AAA domain
CbiA	PF01656	33 - 200	1e-13	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	56, 120
AclWI	GGATC	1 cut(s)	667
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	3 cut(s)	449, 584, 846
AgsI	TTSAA	4 cut(s)	383, 510, 572, 778
AhdI	GACNNNNNGTC	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	4 cut(s)	101, 241, 294, 606
AluI	AGCT	4 cut(s)	101, 241, 294, 606
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	481, 674
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	4 cut(s)	18, 67, 215, 359
AsuHPI	GGTGA	3 cut(s)	70, 464, 713
AvaII	GGWCC	4 cut(s)	18, 67, 215, 359
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	468, 686
BccI	CCATC	2 cut(s)	630, 676
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	482, 675
BlsI	GCNGC	2 cut(s)	483, 676
BmcAI	AGTACT	1 cut(s)	745
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	4 cut(s)	18, 67, 215, 359
BmeRI	GACNNNNNGTC	1 cut(s)	326
BmgT120I	GGNCC	4 cut(s)	18, 67, 215, 359
BmrFI	CCNGG	1 cut(s)	444
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	5 cut(s)	190, 328, 445, 526, 796
BmuI	ACTGGG	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	3 cut(s)	449, 584, 846
Bse1I	ACTGG	2 cut(s)	410, 454
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	343, 541
BseLI	CCNNNNNNNGG	3 cut(s)	449, 584, 846
BseNI	ACTGG	2 cut(s)	410, 454
BseXI	GCAGC	2 cut(s)	468, 686
Bsh1236I	CGCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	379
BslI	CCNNNNNNNGG	3 cut(s)	449, 584, 846
BsmAI	GTCTC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	228, 659, 729
BspACI	CCGC	2 cut(s)	56, 120
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	410, 454
BssMI	GATC	3 cut(s)	228, 659, 729
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	4 cut(s)	469, 626, 752, 761
BstC8I	GCNNGC	3 cut(s)	93, 194, 541
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	2 cut(s)	343, 541
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	3 cut(s)	231, 662, 732
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	228, 659, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	95, 439
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	468, 686
BstX2I	RGATCY	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	343, 541
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 447
Cac8I	GCNNGC	3 cut(s)	93, 194, 541
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	18, 67, 215, 359
Csp6I	GTAC	1 cut(s)	744
CviAII	CATG	4 cut(s)	92, 232, 436, 601
CviJI	RGCY	8 cut(s)	101, 155, 192, 241, 253, 294, 481, 606
CviKI_1	RGCY	8 cut(s)	101, 155, 192, 241, 253, 294, 481, 606
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	3 cut(s)	230, 661, 731
DpnII	GATC	3 cut(s)	228, 659, 729
DriI	GACNNNNNGTC	1 cut(s)	326
Eam1105I	GACNNNNNGTC	1 cut(s)	326
Eco47I	GGWCC	4 cut(s)	18, 67, 215, 359
EcoO109I	RGGNCCY	3 cut(s)	18, 67, 359
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	95, 235, 439, 604
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FatI	CATG	4 cut(s)	91, 231, 435, 600
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	482, 675
FokI	GGATG	2 cut(s)	350, 548
Fsp4HI	GCNGC	2 cut(s)	482, 675
FspBI	CTAG	1 cut(s)	803
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	482, 675
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	95, 235, 439, 604
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	30, 280, 300, 784
HphI	GGTGA	3 cut(s)	70, 464, 713
Hpy166II	GTNNAC	3 cut(s)	135, 403, 433
Hpy188I	TCNGA	3 cut(s)	35, 75, 228
Hpy188III	TCNNGA	6 cut(s)	25, 232, 380, 416, 518, 803
Hpy8I	GTNNAC	3 cut(s)	135, 403, 433
HpyAV	CCTTC	5 cut(s)	31, 80, 178, 239, 647
HpyCH4III	ACNGT	4 cut(s)	469, 626, 752, 761
HpyCH4V	TGCA	7 cut(s)	143, 161, 341, 484, 497, 527, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	95, 235, 439, 604
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	228, 659, 729
Lsp1109I	GCAGC	2 cut(s)	468, 686
LweI	GCATC	5 cut(s)	190, 328, 445, 526, 796
MaeI	CTAG	1 cut(s)	803
MaeIII	GTNAC	2 cut(s)	47, 259
MalI	GATC	3 cut(s)	230, 661, 731
MboI	GATC	3 cut(s)	228, 659, 729
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	4 cut(s)	315, 485, 549, 834
MlyI	GAGTC	1 cut(s)	24
MnlI	CCTC	8 cut(s)	29, 73, 350, 450, 525, 539, 650, 697
MseI	TTAA	5 cut(s)	87, 147, 552, 612, 845
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	3 cut(s)	228, 659, 729
NlaIII	CATG	4 cut(s)	95, 235, 439, 604
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	95, 439
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	280, 300, 784
PkrI	GCNGC	2 cut(s)	483, 676
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	3 cut(s)	18, 67, 359
PshBI	ATTAAT	1 cut(s)	552
Psp5II	RGGWCCY	3 cut(s)	18, 67, 359
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	4 cut(s)	18, 67, 215, 359
PspPPI	RGGWCCY	3 cut(s)	18, 67, 359
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	659
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SaqAI	TTAA	5 cut(s)	87, 147, 552, 612, 845
SatI	GCNGC	2 cut(s)	482, 675
Sau3AI	GATC	3 cut(s)	228, 659, 729
Sau96I	GGNCC	4 cut(s)	18, 67, 215, 359
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	5 cut(s)	190, 328, 445, 526, 796
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	18, 67, 215, 359
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	4 cut(s)	315, 485, 549, 834
SsiI	CCGC	2 cut(s)	56, 120
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	4 cut(s)	469, 626, 752, 761
TaqI	TCGA	2 cut(s)	243, 330
TasI	AATT	4 cut(s)	315, 485, 549, 834
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	3 cut(s)	280, 300, 784
Tru1I	TTAA	5 cut(s)	87, 147, 552, 612, 845
Tru9I	TTAA	5 cut(s)	87, 147, 552, 612, 845
TscAI	CASTG	2 cut(s)	145, 454
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	481, 674
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	197, 251, 631
TspRI	CASTG	2 cut(s)	145, 454
VpaK11BI	GGWCC	4 cut(s)	18, 67, 215, 359
VspI	ATTAAT	1 cut(s)	552
XbaI	TCTAGA	1 cut(s)	802
XceI	RCATGY	2 cut(s)	95, 439
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	803
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.