Rh6DG311700

Iron-sulfur protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007258
Physical Location & Seq
Forward (+)
51320532 .. 51323976
3445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG311700.1

Sequence Viewer

Length: 696 bp
ATGAAGGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCGATCATGATGAAGCTCGAAGGAAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCAATTGGACTTCTTGTCGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACAGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAACTGGGCATCAGAAAGGGCTCTGATGATGGTGTCCCAATAGTAATATCGGCTCCTGATTCTGATGTCTCCAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGCAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

5.11

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 2 - 212 2.9e-83 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AclWI GGATC 1 cut(s) 487
AfiI CCNNNNNNNGG 2 cut(s) 269, 404
AgsI TTSAA 3 cut(s) 203, 330, 392
AhdI GACNNNNNGTC 1 cut(s) 146
AjiI CACGTC 1 cut(s) 677
AjnI CCWGG 1 cut(s) 262
AloI GAACNNNNNNTCC 2 cut(s) 27, 59
AluBI AGCT 3 cut(s) 61, 114, 426
AluI AGCT 3 cut(s) 61, 114, 426
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 1 cut(s) 487
ApeKI GCWGC 2 cut(s) 301, 494
AseI ATTAAT 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 35, 179
AsuHPI GGTGA 2 cut(s) 284, 533
AvaII GGWCC 2 cut(s) 35, 179
BanII GRGCYC 1 cut(s) 557
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 288, 506
BccI CCATC 3 cut(s) 450, 496, 557
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 264
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 607
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 2 cut(s) 302, 495
BlsI GCNGC 2 cut(s) 303, 496
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 35, 179
BmeRI GACNNNNNGTC 1 cut(s) 146
BmgBI CACGTC 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 35, 179
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 2 cut(s) 235, 548
BmsI GCATC 5 cut(s) 10, 148, 265, 346, 552
BmuI ACTGGG 2 cut(s) 235, 548
BpuEI CTTGAG 2 cut(s) 321, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 269, 404
Bse1I ACTGG 3 cut(s) 230, 274, 543
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 163, 361
BseLI CCNNNNNNNGG 2 cut(s) 269, 404
BseMII CTCAG 2 cut(s) 641, 672
BseNI ACTGG 3 cut(s) 230, 274, 543
BseXI GCAGC 2 cut(s) 288, 506
BsiHKAI GWGCWC 1 cut(s) 199
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 2 cut(s) 269, 404
BsmAI GTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 199, 557
Bsp143I GATC 2 cut(s) 48, 479
BspCNI CTCAG 2 cut(s) 640, 673
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 588
BspPI GGATC 1 cut(s) 487
BsrI ACTGG 3 cut(s) 230, 274, 543
BssMI GATC 2 cut(s) 48, 479
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 2 cut(s) 289, 446
BstC8I GCNNGC 2 cut(s) 14, 361
BstDEI CTNAG 2 cut(s) 627, 681
BstF5I GGATG 2 cut(s) 163, 361
BstKTI GATC 2 cut(s) 51, 482
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 2 cut(s) 48, 479
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 288, 506
BstX2I RGATCY 1 cut(s) 479
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 1 cut(s) 479
BsuI GTATCC 1 cut(s) 301
BtrI CACGTC 1 cut(s) 677
BtsCI GGATG 2 cut(s) 163, 361
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 14, 361
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 35, 179
CviAII CATG 3 cut(s) 52, 256, 421
CviJI RGCY 9 cut(s) 12, 61, 73, 114, 301, 426, 555, 587, 626
CviKI_1 RGCY 9 cut(s) 12, 61, 73, 114, 301, 426, 555, 587, 626
DdeI CTNAG 2 cut(s) 627, 681
DpnI GATC 2 cut(s) 50, 481
DpnII GATC 2 cut(s) 48, 479
DriI GACNNNNNGTC 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 35, 179
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 3 cut(s) 55, 259, 424
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 554
FatI CATG 3 cut(s) 51, 255, 420
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 302, 495
FokI GGATG 2 cut(s) 170, 368
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 2 cut(s) 302, 495
GluI GCNGC 2 cut(s) 302, 495
Hin1II CATG 3 cut(s) 55, 259, 424
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 3 cut(s) 100, 120, 593
HphI GGTGA 2 cut(s) 284, 533
Hpy166II GTNNAC 2 cut(s) 223, 253
Hpy188I TCNGA 5 cut(s) 48, 548, 559, 598, 630
Hpy188III TCNNGA 6 cut(s) 52, 200, 236, 338, 590, 680
Hpy8I GTNNAC 2 cut(s) 223, 253
HpyAV CCTTC 2 cut(s) 59, 467
HpyCH4III ACNGT 2 cut(s) 289, 446
HpyCH4IV ACGT 1 cut(s) 676
HpyCH4V TGCA 4 cut(s) 161, 304, 317, 347
HpyF3I CTNAG 2 cut(s) 627, 681
HpySE526I ACGT 1 cut(s) 676
Hsp92II CATG 3 cut(s) 55, 259, 424
Kzo9I GATC 2 cut(s) 48, 479
LmnI GCTCC 1 cut(s) 592
LpnPI CCDG 9 cut(s) 87, 211, 249, 255, 276, 297, 504, 524, 603
Lsp1109I GCAGC 2 cut(s) 288, 506
LweI GCATC 5 cut(s) 10, 148, 265, 346, 552
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 50, 481
MboI GATC 2 cut(s) 48, 479
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 2 cut(s) 199, 557
MluCI AATT 4 cut(s) 135, 305, 369, 653
MnlI CCTC 7 cut(s) 170, 270, 345, 359, 470, 613, 643
MseI TTAA 2 cut(s) 372, 432
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 264
NdeII GATC 2 cut(s) 48, 479
NlaIII CATG 3 cut(s) 55, 259, 424
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 259
PagI TCATGA 1 cut(s) 51
PfeI GAWTC 3 cut(s) 100, 120, 593
PkrI GCNGC 2 cut(s) 303, 496
PpuMI RGGWCCY 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 2 cut(s) 35, 179
PspPPI RGGWCCY 1 cut(s) 179
PsuI RGATCY 1 cut(s) 479
SaqAI TTAA 2 cut(s) 372, 432
SatI GCNGC 2 cut(s) 302, 495
Sau3AI GATC 2 cut(s) 48, 479
Sau96I GGNCC 2 cut(s) 35, 179
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 2 cut(s) 199, 557
SetI ASST 8 cut(s) 9, 63, 116, 181, 337, 428, 624, 679
SfaNI GCATC 5 cut(s) 10, 148, 265, 346, 552
SinI GGWCC 2 cut(s) 35, 179
SmlI CTYRAG 2 cut(s) 336, 647
SmoI CTYRAG 2 cut(s) 336, 647
Sse9I AATT 4 cut(s) 135, 305, 369, 653
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 2 cut(s) 289, 446
TaiI ACGT 1 cut(s) 679
TaqI TCGA 2 cut(s) 63, 150
TasI AATT 4 cut(s) 135, 305, 369, 653
TfiI GAWTC 3 cut(s) 100, 120, 593
Tru1I TTAA 2 cut(s) 372, 432
Tru9I TTAA 2 cut(s) 372, 432
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 301, 494
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 17, 71, 451
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 35, 179
VspI ATTAAT 1 cut(s) 372
XceI RCATGY 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.