Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Forward (+)

50690233 .. 50694337

Gene Structure 4105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCATAACTCTATGCGATTGAGAACTTTAAGGGCAAAAAATGTACATATTTGTGTTAGGAGTTACAGCGCGGTGAAAAAGGACCTTCGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAGGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCGATCATGATGAAGCTCGAAGGAAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCAATTGGACTTCTTGTCGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACGGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAACTGGGGATCAGAAAAGGCTCTGATGATGGTGTCCCAATAGTAATATCGGCTCCTGATTCTGATGTCTCCAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGCAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

296

Amino Acids

31.91

Weight (kDa)

8.65

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	34 - 277	2.9e-100	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	36 - 96	1.9e-07	ATPase MipZ
AAA_31	PF13614	37 - 75	5.5e-09	AAA domain
CbiA	PF01656	38 - 205	9.4e-14	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	71, 135
AclWI	GGATC	2 cut(s)	682, 746
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	464, 599
AgsI	TTSAA	3 cut(s)	398, 525, 587
AhdI	GACNNNNNGTC	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	457
AloI	GAACNNNNNNTCC	2 cut(s)	222, 254
AluBI	AGCT	4 cut(s)	116, 256, 309, 621
AluI	AGCT	4 cut(s)	116, 256, 309, 621
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	2 cut(s)	682, 746
ApeKI	GCWGC	2 cut(s)	496, 689
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	82, 230, 374
AsuHPI	GGTGA	3 cut(s)	85, 479, 728
AvaII	GGWCC	3 cut(s)	82, 230, 374
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	483, 701
BccI	CCATC	3 cut(s)	645, 691, 752
BceAI	ACGGC	1 cut(s)	702
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	1 cut(s)	459
BciVI	GTATCC	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	802
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	2 cut(s)	497, 690
BlsI	GCNGC	2 cut(s)	498, 691
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	3 cut(s)	82, 230, 374
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	872
BmgT120I	GGNCC	3 cut(s)	82, 230, 374
BmiI	GGNNCC	1 cut(s)	783
BmrFI	CCNGG	1 cut(s)	459
BmrI	ACTGGG	2 cut(s)	430, 743
BmsI	GCATC	4 cut(s)	205, 343, 460, 541
BmuI	ACTGGG	2 cut(s)	430, 743
BpuEI	CTTGAG	2 cut(s)	516, 863
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 599
Bse1I	ACTGG	3 cut(s)	425, 469, 738
BseBI	CCWGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	358, 556
BseLI	CCNNNNNNNGG	2 cut(s)	464, 599
BseMII	CTCAG	2 cut(s)	836, 867
BseNI	ACTGG	3 cut(s)	425, 469, 738
BseXI	GCAGC	2 cut(s)	483, 701
Bsh1236I	CGCG	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	2 cut(s)	464, 599
BsmAI	GTCTC	1 cut(s)	802
BsmFI	GGGAC	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	243, 674, 738
BspACI	CCGC	2 cut(s)	71, 135
BspCNI	CTCAG	2 cut(s)	835, 868
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	783
BspMAI	CTGCAG	1 cut(s)	160
BspPI	GGATC	2 cut(s)	682, 746
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	425, 469, 738
BssMI	GATC	3 cut(s)	243, 674, 738
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	484, 641
BstAUI	TGTACA	1 cut(s)	43
BstC8I	GCNNGC	3 cut(s)	108, 209, 556
BstDEI	CTNAG	2 cut(s)	822, 876
BstF5I	GGATG	2 cut(s)	358, 556
BstFNI	CGCG	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	3 cut(s)	246, 677, 741
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	3 cut(s)	243, 674, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	2 cut(s)	110, 454
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	2 cut(s)	483, 701
BstX2I	RGATCY	1 cut(s)	674
BstXI	CCANNNNNNTGG	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	496
BtrI	CACGTC	1 cut(s)	872
BtsCI	GGATG	2 cut(s)	358, 556
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 462
Cac8I	GCNNGC	3 cut(s)	108, 209, 556
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	82, 230, 374
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	4 cut(s)	107, 247, 451, 616
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	2 cut(s)	822, 876
DpnI	GATC	3 cut(s)	245, 676, 740
DpnII	GATC	3 cut(s)	243, 674, 738
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	341
Eco47I	GGWCC	3 cut(s)	82, 230, 374
EcoO109I	RGGNCCY	2 cut(s)	82, 374
EcoRII	CCWGG	1 cut(s)	457
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	110, 250, 454, 619
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	4 cut(s)	106, 246, 450, 615
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	497, 690
FokI	GGATG	2 cut(s)	365, 563
Fsp4HI	GCNGC	2 cut(s)	497, 690
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	2 cut(s)	497, 690
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	110, 250, 454, 619
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	3 cut(s)	295, 315, 788
HphI	GGTGA	3 cut(s)	85, 479, 728
Hpy166II	GTNNAC	3 cut(s)	150, 418, 448
Hpy188I	TCNGA	6 cut(s)	90, 243, 743, 754, 793, 825
Hpy188III	TCNNGA	6 cut(s)	247, 395, 431, 533, 785, 875
Hpy8I	GTNNAC	3 cut(s)	150, 418, 448
HpyAV	CCTTC	4 cut(s)	95, 193, 254, 662
HpyCH4III	ACNGT	2 cut(s)	484, 641
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	7 cut(s)	4, 158, 176, 356, 499, 512, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	2 cut(s)	822, 876
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	4 cut(s)	110, 250, 454, 619
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	243, 674, 738
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	2 cut(s)	483, 701
LweI	GCATC	4 cut(s)	205, 343, 460, 541
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	62, 274
MalI	GATC	3 cut(s)	245, 676, 740
MboI	GATC	3 cut(s)	243, 674, 738
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	330, 500, 564, 848
MnlI	CCTC	8 cut(s)	88, 365, 465, 540, 554, 665, 808, 838
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	29, 102, 162, 567, 627
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	141
NdeII	GATC	3 cut(s)	243, 674, 738
NlaIII	CATG	4 cut(s)	110, 250, 454, 619
NlaIV	GGNNCC	1 cut(s)	783
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	110, 454
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	295, 315, 788
PkrI	GCNGC	2 cut(s)	498, 691
PpuMI	RGGWCCY	2 cut(s)	82, 374
PshBI	ATTAAT	1 cut(s)	567
Psp5II	RGGWCCY	2 cut(s)	82, 374
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	783
PspPI	GGNCC	3 cut(s)	82, 230, 374
PspPPI	RGGWCCY	2 cut(s)	82, 374
PstI	CTGCAG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	5 cut(s)	29, 102, 162, 567, 627
SatI	GCNGC	2 cut(s)	497, 690
Sau3AI	GATC	3 cut(s)	243, 674, 738
Sau96I	GGNCC	3 cut(s)	82, 230, 374
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	205, 343, 460, 541
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	3 cut(s)	82, 230, 374
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	531, 842
SmoI	CTYRAG	2 cut(s)	531, 842
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	4 cut(s)	330, 500, 564, 848
SsiI	CCGC	2 cut(s)	71, 135
StyD4I	CCNGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	484, 641
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	2 cut(s)	258, 345
TasI	AATT	4 cut(s)	330, 500, 564, 848
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	295, 315, 788
Tru1I	TTAA	5 cut(s)	29, 102, 162, 567, 627
Tru9I	TTAA	5 cut(s)	29, 102, 162, 567, 627
TscAI	CASTG	2 cut(s)	160, 469
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	496, 689
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	212, 266, 646
TspRI	CASTG	2 cut(s)	160, 469
VpaK11BI	GGWCC	3 cut(s)	82, 230, 374
VspI	ATTAAT	1 cut(s)	567
XceI	RCATGY	2 cut(s)	110, 454
XmiI	GTMKAC	1 cut(s)	447
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.