Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Reverse (-)

17500888 .. 17503484

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGCAACTACTGAGGTCCTTCGCGAGACTCGGAGGTGTTAGGAGTTACAGCGCGGTGAAAAAGGACCTTCGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAAGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCTATCATGATGAAGCTCGAAGGGAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAGTCAAGTGTATGTCGATTGGACTTCTTGTGGATAAGGATTCCCCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGCGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATTACTGTATCCCAACGGCTGCAATTATCAGGTGCATTGATTGTTTCAACTCCTCAAGATGTCGCGCTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGAATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATGTCGTAAGACAGCAGGAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAAGTGGGGATCAGAAAAGGCTCTGATAACGGTGTCCCAATAGTAATATCAGCTCCTGATTCTGATGTCTCGAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGGAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

292

Amino Acids

31.39

Weight (kDa)

8.96

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	29 - 272	1.9e-99	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	31 - 150	9.4e-08	ATPase MipZ
AAA_31	PF13614	32 - 71	1.4e-08	AAA domain
CbiA	PF01656	33 - 200	6.9e-14	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	3 cut(s)	26, 56, 527
AciI	CCGC	2 cut(s)	56, 120
AclWI	GGATC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	449, 584
AgsI	TTSAA	3 cut(s)	383, 510, 572
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	5 cut(s)	101, 241, 294, 606, 767
AluI	AGCT	5 cut(s)	101, 241, 294, 606, 767
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	3 cut(s)	22, 787, 817
AlwI	GGATC	1 cut(s)	731
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	1 cut(s)	481
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	56, 529
AspS9I	GGNCC	4 cut(s)	18, 67, 215, 359
AsuHPI	GGTGA	3 cut(s)	70, 464, 713
AvaII	GGWCC	4 cut(s)	18, 67, 215, 359
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	2 cut(s)	630, 676
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	22, 787, 817
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	4 cut(s)	18, 67, 215, 359
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	18, 67, 215, 359
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	3 cut(s)	190, 445, 526
BpuEI	CTTGAG	2 cut(s)	501, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 584
Bse1I	ACTGG	2 cut(s)	410, 454
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	541, 665
BseLI	CCNNNNNNNGG	2 cut(s)	449, 584
BseMII	CTCAG	3 cut(s)	5, 821, 852
BseNI	ACTGG	2 cut(s)	410, 454
BseRI	GAGGAG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	468
Bsh1236I	CGCG	3 cut(s)	26, 56, 527
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	449, 584
BsmAI	GTCTC	3 cut(s)	22, 787, 817
BsmFI	GGGAC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	723
Bsp68I	TCGCGA	1 cut(s)	26
BspACI	CCGC	2 cut(s)	56, 120
BspCNI	CTCAG	3 cut(s)	6, 820, 853
BspFNI	CGCG	3 cut(s)	26, 56, 527
BspHI	TCATGA	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	731
BsrI	ACTGG	2 cut(s)	410, 454
BssMI	GATC	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	469, 626, 746
BstC8I	GCNNGC	3 cut(s)	93, 194, 541
BstDEI	CTNAG	3 cut(s)	14, 807, 861
BstF5I	GGATG	2 cut(s)	541, 665
BstFNI	CGCG	3 cut(s)	26, 56, 527
BstHHI	GCGC	2 cut(s)	56, 529
BstKTI	GATC	1 cut(s)	726
BstMAI	GTCTC	3 cut(s)	22, 787, 817
BstMBI	GATC	1 cut(s)	723
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	95, 439
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	3 cut(s)	26, 56, 527
BstV1I	GCAGC	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	541, 665
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 447
BtuMI	TCGCGA	1 cut(s)	26
Cac8I	GCNNGC	3 cut(s)	93, 194, 541
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	2 cut(s)	56, 529
Cfr13I	GGNCC	4 cut(s)	18, 67, 215, 359
CviAII	CATG	4 cut(s)	92, 232, 436, 601
DdeI	CTNAG	3 cut(s)	14, 807, 861
DpnI	GATC	1 cut(s)	725
DpnII	GATC	1 cut(s)	723
Eco47I	GGWCC	4 cut(s)	18, 67, 215, 359
EcoO109I	RGGNCCY	3 cut(s)	18, 67, 359
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	95, 235, 439, 604
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	4 cut(s)	91, 231, 435, 600
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	2 cut(s)	548, 672
Fsp4HI	GCNGC	1 cut(s)	482
GlaI	GCGC	2 cut(s)	55, 528
GluI	GCNGC	1 cut(s)	482
HhaI	GCGC	2 cut(s)	56, 529
Hin1II	CATG	4 cut(s)	95, 235, 439, 604
Hin6I	GCGC	2 cut(s)	54, 527
HinP1I	GCGC	2 cut(s)	54, 527
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	30, 280, 300, 338, 773
HphI	GGTGA	3 cut(s)	70, 464, 713
Hpy166II	GTNNAC	3 cut(s)	135, 403, 433
Hpy188I	TCNGA	6 cut(s)	35, 75, 728, 739, 778, 810
Hpy188III	TCNNGA	9 cut(s)	25, 232, 380, 416, 518, 770, 784, 820, 860
Hpy8I	GTNNAC	3 cut(s)	135, 403, 433
HpyAV	CCTTC	4 cut(s)	31, 80, 239, 647
HpyCH4III	ACNGT	3 cut(s)	469, 626, 746
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	4 cut(s)	143, 161, 484, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	14, 807, 861
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	4 cut(s)	95, 235, 439, 604
HspAI	GCGC	2 cut(s)	54, 527
Kzo9I	GATC	1 cut(s)	723
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	3 cut(s)	190, 445, 526
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	2 cut(s)	47, 259
MalI	GATC	1 cut(s)	725
MboI	GATC	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	4 cut(s)	485, 549, 588, 833
MlyI	GAGTC	2 cut(s)	24, 309
MseI	TTAA	4 cut(s)	87, 147, 552, 612
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	3 cut(s)	26, 56, 527
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	723
NlaIII	CATG	4 cut(s)	95, 235, 439, 604
NmuCI	GTSAC	1 cut(s)	259
NruI	TCGCGA	1 cut(s)	26
NspI	RCATGY	2 cut(s)	95, 439
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	280, 338, 773
PkrI	GCNGC	1 cut(s)	483
PleI	GAGTC	2 cut(s)	24, 308
PpsI	GAGTC	2 cut(s)	24, 308
PpuMI	RGGWCCY	3 cut(s)	18, 67, 359
PshBI	ATTAAT	1 cut(s)	552
Psp5II	RGGWCCY	3 cut(s)	18, 67, 359
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspPI	GGNCC	4 cut(s)	18, 67, 215, 359
PspPPI	RGGWCCY	3 cut(s)	18, 67, 359
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	770
RruI	TCGCGA	1 cut(s)	26
SaqAI	TTAA	4 cut(s)	87, 147, 552, 612
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	1 cut(s)	723
Sau96I	GGNCC	4 cut(s)	18, 67, 215, 359
SchI	GAGTC	2 cut(s)	24, 309
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	3 cut(s)	190, 445, 526
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	18, 67, 215, 359
SmlI	CTYRAG	2 cut(s)	516, 827
SmoI	CTYRAG	2 cut(s)	516, 827
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	4 cut(s)	485, 549, 588, 833
SsiI	CCGC	2 cut(s)	56, 120
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	469, 626, 746
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	3 cut(s)	243, 314, 785
TasI	AATT	4 cut(s)	485, 549, 588, 833
TfiI	GAWTC	3 cut(s)	280, 338, 773
Tru1I	TTAA	4 cut(s)	87, 147, 552, 612
Tru9I	TTAA	4 cut(s)	87, 147, 552, 612
TscAI	CASTG	2 cut(s)	145, 454
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	3 cut(s)	197, 251, 631
TspRI	CASTG	2 cut(s)	145, 454
VpaK11BI	GGWCC	4 cut(s)	18, 67, 215, 359
VspI	ATTAAT	1 cut(s)	552
XceI	RCATGY	2 cut(s)	95, 439
XmiI	GTMKAC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.