FvH4_2g22230

Iron-sulfur protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007258
Physical Location & Seq
Forward (+)
18268649 .. 18272054
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g22230.t3

Sequence Viewer

Length: 876 bp
ATGAGGGGACTATGGAGGTCCTTCACGAGGCTCGGAGGTGTAAGGAGTTACAGTGCGGTGAAGAAGGACCTTAGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCAGTTGCACTGGCTAACAAGTGTGGAATGAAGGTTGGCTTGCTTGATGCTGATGTGTATGGACCAAATATTCCTATCATGATGAAGCTCGAAGGAAAGCCTGAAGTGACCAAAGATAAGAAAATGATTCCAATCGAGAGCTATGGAGTCAAGTGTATGTCGATTGGACTTCTAGTGGACAAGGATGCCCCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATTACTGTATCCCAAAGGCTGCAATTATCCGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCTATTTTGGGAATTGTAGAGAACATGAGCTGTTTTAAGTGCCCAAATTGTGCTGAACGCTGGTTCATCTTTGGGGAAGGAGGATCCCGTAAGACAGCAGCAGAGATGGGAATAGAAGTTGCTGGCGAGATACCATTAGAAGTGGGGATCAGAAAAGGCTCTGATGACGGTGTCCCAATAGTAATATCAGCACCTGATTCTGATGTCTCAAGGGCATATGTCGATGTGGCTCAGAAAGTTGTCAGCAGACTCGATGAATTATCAAAGGAAGAACATTCACGTCCTGAGATTTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ParA

Protein Analysis

292

Amino Acids

31.24

Weight (kDa)

8.2

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 2 - 212 5.2e-83 NUBPL iron-transfer P-loop NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 432
AciI CCGC 2 cut(s) 56, 120
AclWI GGATC 3 cut(s) 654, 667, 731
AcuI CTGAAG 1 cut(s) 276
AfiI CCNNNNNNNGG 3 cut(s) 27, 449, 584
AgsI TTSAA 3 cut(s) 383, 510, 572
AjiI CACGTC 1 cut(s) 857
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 4 cut(s) 101, 241, 294, 606
AluI AGCT 4 cut(s) 101, 241, 294, 606
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 3 cut(s) 654, 667, 731
AlwNI CAGNNNCTG 1 cut(s) 770
ApeKI GCWGC 2 cut(s) 481, 674
AseI ATTAAT 1 cut(s) 552
AspS9I GGNCC 4 cut(s) 18, 67, 215, 359
AsuHPI GGTGA 2 cut(s) 70, 464
AvaII GGWCC 4 cut(s) 18, 67, 215, 359
AxyI CCTNAGG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 659
BauI CACGAG 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 468, 686
BccI CCATC 1 cut(s) 676
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 787
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 141
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 2 cut(s) 482, 675
BlsI GCNGC 2 cut(s) 483, 676
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 4 cut(s) 18, 67, 215, 359
BmgBI CACGTC 1 cut(s) 857
BmgT120I GGNCC 4 cut(s) 18, 67, 215, 359
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 4 cut(s) 190, 328, 445, 526
BmuI ACTGGG 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 501, 769
BsaBI GATNNNNATC 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 449, 584
Bse1I ACTGG 3 cut(s) 168, 410, 454
Bse21I CCTNAGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 343, 541
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 27, 449, 584
BseMII CTCAG 2 cut(s) 821, 852
BseNI ACTGG 3 cut(s) 168, 410, 454
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 2 cut(s) 468, 686
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 2 cut(s) 21, 734
BslI CCNNNNNNNGG 3 cut(s) 27, 449, 584
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 2 cut(s) 21, 734
Bsp1286I GDGCHC 2 cut(s) 379, 620
Bsp143I GATC 2 cut(s) 659, 723
BspACI CCGC 2 cut(s) 56, 120
BspCNI CTCAG 2 cut(s) 820, 853
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 145
BspPI GGATC 3 cut(s) 654, 667, 731
BsrI ACTGG 3 cut(s) 168, 410, 454
BssMI GATC 2 cut(s) 659, 723
BssSI CACGAG 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 3 cut(s) 53, 469, 746
BstC8I GCNNGC 4 cut(s) 93, 194, 541, 700
BstDEI CTNAG 3 cut(s) 71, 807, 861
BstENI CCTNNNNNAGG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 343, 541
BstKTI GATC 2 cut(s) 662, 726
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 2 cut(s) 659, 723
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 2 cut(s) 95, 439
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 141
BstSLI GKGCMC 1 cut(s) 620
BstV1I GCAGC 2 cut(s) 468, 686
BstX2I RGATCY 1 cut(s) 659
BstXI CCANNNNNNTGG 1 cut(s) 351
BstYI RGATCY 1 cut(s) 659
Bsu36I CCTNAGG 1 cut(s) 71
BsuI GTATCC 1 cut(s) 481
BtrI CACGTC 1 cut(s) 857
BtsCI GGATG 2 cut(s) 343, 541
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 4 cut(s) 58, 138, 161, 447
Cac8I GCNNGC 4 cut(s) 93, 194, 541, 700
CaiI CAGNNNCTG 1 cut(s) 770
CciI TCATGA 1 cut(s) 231
Cfr13I GGNCC 4 cut(s) 18, 67, 215, 359
CviAII CATG 4 cut(s) 92, 232, 436, 601
DdeI CTNAG 3 cut(s) 71, 807, 861
DpnI GATC 2 cut(s) 661, 725
DpnII GATC 2 cut(s) 659, 723
Eco47I GGWCC 4 cut(s) 18, 67, 215, 359
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 25
EcoO109I RGGNCCY 3 cut(s) 18, 67, 359
EcoRII CCWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 95, 235, 439, 604
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FaqI GGGAC 2 cut(s) 21, 734
FatI CATG 4 cut(s) 91, 231, 435, 600
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 482, 675
FokI GGATG 2 cut(s) 350, 548
Fsp4HI GCNGC 2 cut(s) 482, 675
FspBI CTAG 1 cut(s) 326
GluI GCNGC 2 cut(s) 482, 675
HapII CCGG 1 cut(s) 492
Hin1II CATG 4 cut(s) 95, 235, 439, 604
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 4 cut(s) 280, 300, 773, 825
HpaII CCGG 1 cut(s) 492
HphI GGTGA 2 cut(s) 70, 464
Hpy166II GTNNAC 4 cut(s) 135, 331, 403, 433
Hpy188I TCNGA 5 cut(s) 35, 728, 739, 778, 810
Hpy188III TCNNGA 7 cut(s) 25, 232, 289, 380, 416, 518, 860
Hpy8I GTNNAC 4 cut(s) 135, 331, 403, 433
HpyAV CCTTC 5 cut(s) 31, 58, 178, 239, 647
HpyCH4III ACNGT 3 cut(s) 53, 469, 746
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 5 cut(s) 143, 161, 484, 497, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 3 cut(s) 71, 807, 861
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 4 cut(s) 95, 235, 439, 604
Kzo9I GATC 2 cut(s) 659, 723
Lsp1109I GCAGC 2 cut(s) 468, 686
LweI GCATC 4 cut(s) 190, 328, 445, 526
MaeI CTAG 1 cut(s) 326
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 2 cut(s) 47, 259
MalI GATC 2 cut(s) 661, 725
MboI GATC 2 cut(s) 659, 723
MboII GAAGA 2 cut(s) 73, 857
MflI RGATCY 1 cut(s) 659
MhlI GDGCHC 2 cut(s) 379, 620
MluCI AATT 5 cut(s) 485, 549, 588, 622, 833
MlyI GAGTC 2 cut(s) 309, 819
MnlI CCTC 9 cut(s) 9, 21, 29, 73, 350, 450, 525, 539, 650
MseI TTAA 4 cut(s) 87, 147, 552, 612
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 793
NdeII GATC 2 cut(s) 659, 723
NlaIII CATG 4 cut(s) 95, 235, 439, 604
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 1 cut(s) 259
NspI RCATGY 2 cut(s) 95, 439
PaeI GCATGC 1 cut(s) 95
PagI TCATGA 1 cut(s) 231
PfeI GAWTC 2 cut(s) 280, 773
PflFI GACNNNGTC 1 cut(s) 746
PkrI GCNGC 2 cut(s) 483, 676
PleI GAGTC 2 cut(s) 308, 819
PpsI GAGTC 2 cut(s) 308, 819
PpuMI RGGWCCY 3 cut(s) 18, 67, 359
PshBI ATTAAT 1 cut(s) 552
Psp5II RGGWCCY 3 cut(s) 18, 67, 359
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 4 cut(s) 18, 67, 215, 359
PspPPI RGGWCCY 3 cut(s) 18, 67, 359
PstI CTGCAG 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 1 cut(s) 659
PsyI GACNNNGTC 1 cut(s) 746
SaqAI TTAA 4 cut(s) 87, 147, 552, 612
SatI GCNGC 2 cut(s) 482, 675
Sau3AI GATC 2 cut(s) 659, 723
Sau96I GGNCC 4 cut(s) 18, 67, 215, 359
SchI GAGTC 2 cut(s) 309, 819
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 379, 620
SfaNI GCATC 4 cut(s) 190, 328, 445, 526
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 4 cut(s) 18, 67, 215, 359
SmlI CTYRAG 2 cut(s) 516, 784
SmoI CTYRAG 2 cut(s) 516, 784
SphI GCATGC 1 cut(s) 95
Sse9I AATT 5 cut(s) 485, 549, 588, 622, 833
SsiI CCGC 2 cut(s) 56, 120
SspI AATATT 1 cut(s) 223
SspMI CTAG 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 53, 469, 746
TaiI ACGT 1 cut(s) 859
TaqI TCGA 5 cut(s) 243, 288, 314, 798, 828
TasI AATT 5 cut(s) 485, 549, 588, 622, 833
TfiI GAWTC 2 cut(s) 280, 773
Tru1I TTAA 4 cut(s) 87, 147, 552, 612
Tru9I TTAA 4 cut(s) 87, 147, 552, 612
TscAI CASTG 4 cut(s) 58, 145, 168, 454
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 481, 674
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 4 cut(s) 197, 251, 631, 846
TspRI CASTG 4 cut(s) 58, 145, 168, 454
Tth111I GACNNNGTC 1 cut(s) 746
VpaK11BI GGWCC 4 cut(s) 18, 67, 215, 359
VspI ATTAAT 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 25
XceI RCATGY 2 cut(s) 95, 439
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.