Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Reverse (-)

19065161 .. 19068178

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAGGCAACTACTGAGGTCCTTCACGAGACTCGGAGGTGTTAGGAGTTACAGCGCGGTGAAAAAGGACCTTAGGATTGAGGGTGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTGGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGTGGAATGAAAGTCGGCTTGCTTGATGCTGATGTATATGGACCAAATGTTCCCATCATGATGAAGCTCGAAGGGAAGCCAGAAGTGACCAAAGATAAAAAAATGATTCCAATAGAGAGCTATGGAATCAAGTGTATGTCGATTGGACTTCTTGTGGATAAGGATGCACCACTTGTTTGGAGAGGTCCTATGGTATCAAGTGCTCTTGAAAAAATGACAAGGGGGGTTGACTGGGGAAATCTTGATATTCTTGTGGTAGACATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCTGGTGCATTGATTGTTTCAACACCTCAAGATGTTGCACTAATGGATGCTCGCAGAGGAATTAATATGTTCTCTAAAGTTGAAGTGCCGATTTTGGGGATTGTTGAGAACATGAGCTGTTTTAAGTGTCCAAACTGTGCTGAACGATGGTTCATCTTTGGGGAAGGAGGATCTCGTAAGACGGCAGCAGAGATGGGAATAGAAGTTGCTGGTGAGATACCATTAGAAGTGGGGATCAGAAAAGGCTCTGATGACGGTGTCCCAATAGTAATATCGGCTCCTGATTCTGATGTCACGAAAGCATATATTGAGGTGGCTCAGAAAGTTGTCAGCAGACTTGAGGAATTATCAAAGGAACAACATTCACGTCCTGAGATTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

291

Amino Acids

31.26

Weight (kDa)

8.51

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	29 - 272	3.9e-100	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	31 - 91	1.8e-07	ATPase MipZ
AAA_31	PF13614	32 - 70	1.1e-08	AAA domain
CbiA	PF01656	33 - 200	1.2e-13	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	56, 120
AclWI	GGATC	2 cut(s)	667, 731
AfiI	CCNNNNNNNGG	2 cut(s)	449, 584
AgsI	TTSAA	3 cut(s)	383, 510, 572
AjiI	CACGTC	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	442
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	4 cut(s)	101, 241, 294, 606
AluI	AGCT	4 cut(s)	101, 241, 294, 606
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	667, 731
ApeKI	GCWGC	2 cut(s)	481, 674
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	4 cut(s)	18, 67, 215, 359
AsuHPI	GGTGA	3 cut(s)	70, 464, 713
AvaII	GGWCC	4 cut(s)	18, 67, 215, 359
AxyI	CCTNAGG	1 cut(s)	71
BauI	CACGAG	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	468, 686
BccI	CCATC	3 cut(s)	236, 630, 676
BceAI	ACGGC	1 cut(s)	687
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	22
BfmI	CTRYAG	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	482, 675
BlsI	GCNGC	2 cut(s)	483, 676
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	4 cut(s)	18, 67, 215, 359
BmgBI	CACGTC	1 cut(s)	857
BmgT120I	GGNCC	4 cut(s)	18, 67, 215, 359
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	444
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	4 cut(s)	190, 328, 445, 526
BmuI	ACTGGG	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	501, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 584
Bse1I	ACTGG	2 cut(s)	410, 454
Bse21I	CCTNAGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	343, 541
BseLI	CCNNNNNNNGG	2 cut(s)	449, 584
BseMII	CTCAG	3 cut(s)	5, 821, 852
BseNI	ACTGG	2 cut(s)	410, 454
BseXI	GCAGC	2 cut(s)	468, 686
Bsh1236I	CGCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	449, 584
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	659, 723
BspACI	CCGC	2 cut(s)	56, 120
BspCNI	CTCAG	3 cut(s)	6, 820, 853
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	768
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	667, 731
BsrI	ACTGG	2 cut(s)	410, 454
BssMI	GATC	2 cut(s)	659, 723
BssSI	CACGAG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	469, 626, 746
BstC8I	GCNNGC	3 cut(s)	93, 194, 541
BstDEI	CTNAG	4 cut(s)	14, 71, 807, 861
BstF5I	GGATG	2 cut(s)	343, 541
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	662, 726
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	659, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	2 cut(s)	95, 439
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	141
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	468, 686
BstX2I	RGATCY	1 cut(s)	659
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	857
BtsCI	GGATG	2 cut(s)	343, 541
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 447
Cac8I	GCNNGC	3 cut(s)	93, 194, 541
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	4 cut(s)	18, 67, 215, 359
CviAII	CATG	4 cut(s)	92, 232, 436, 601
DdeI	CTNAG	4 cut(s)	14, 71, 807, 861
DpnI	GATC	2 cut(s)	661, 725
DpnII	GATC	2 cut(s)	659, 723
Eco47I	GGWCC	4 cut(s)	18, 67, 215, 359
Eco81I	CCTNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	3 cut(s)	18, 67, 359
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	95, 235, 439, 604
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	4 cut(s)	91, 231, 435, 600
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	482, 675
FokI	GGATG	2 cut(s)	350, 548
Fsp4HI	GCNGC	2 cut(s)	482, 675
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	482, 675
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	95, 235, 439, 604
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	30, 280, 300, 773
HphI	GGTGA	3 cut(s)	70, 464, 713
Hpy166II	GTNNAC	3 cut(s)	135, 403, 433
Hpy188I	TCNGA	5 cut(s)	35, 728, 739, 778, 810
Hpy188III	TCNNGA	8 cut(s)	25, 232, 380, 416, 518, 770, 784, 860
Hpy8I	GTNNAC	3 cut(s)	135, 403, 433
HpyAV	CCTTC	3 cut(s)	31, 239, 647
HpyCH4III	ACNGT	3 cut(s)	469, 626, 746
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	6 cut(s)	143, 161, 341, 484, 497, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	4 cut(s)	14, 71, 807, 861
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	4 cut(s)	95, 235, 439, 604
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	659, 723
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	2 cut(s)	468, 686
LweI	GCATC	4 cut(s)	190, 328, 445, 526
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	3 cut(s)	47, 259, 781
MalI	GATC	2 cut(s)	661, 725
MboI	GATC	2 cut(s)	659, 723
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	3 cut(s)	485, 549, 833
MlyI	GAGTC	1 cut(s)	24
MseI	TTAA	4 cut(s)	87, 147, 552, 612
MslI	CAYNNNNRTG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	659, 723
NlaIII	CATG	4 cut(s)	95, 235, 439, 604
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	2 cut(s)	259, 781
NspI	RCATGY	2 cut(s)	95, 439
PaeI	GCATGC	1 cut(s)	95
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	280, 300, 773
PflFI	GACNNNGTC	1 cut(s)	746
PkrI	GCNGC	2 cut(s)	483, 676
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	3 cut(s)	18, 67, 359
PshBI	ATTAAT	1 cut(s)	552
Psp5II	RGGWCCY	3 cut(s)	18, 67, 359
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	4 cut(s)	18, 67, 215, 359
PspPPI	RGGWCCY	3 cut(s)	18, 67, 359
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	659
PsyI	GACNNNGTC	1 cut(s)	746
RseI	CAYNNNNRTG	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	87, 147, 552, 612
SatI	GCNGC	2 cut(s)	482, 675
Sau3AI	GATC	2 cut(s)	659, 723
Sau96I	GGNCC	4 cut(s)	18, 67, 215, 359
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	4 cut(s)	190, 328, 445, 526
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	18, 67, 215, 359
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	516, 827
SmoI	CTYRAG	2 cut(s)	516, 827
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	485, 549, 833
SsiI	CCGC	2 cut(s)	56, 120
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	469, 626, 746
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	2 cut(s)	243, 314
TasI	AATT	3 cut(s)	485, 549, 833
TfiI	GAWTC	3 cut(s)	280, 300, 773
Tru1I	TTAA	4 cut(s)	87, 147, 552, 612
Tru9I	TTAA	4 cut(s)	87, 147, 552, 612
TscAI	CASTG	2 cut(s)	145, 454
TseFI	GTSAC	2 cut(s)	259, 781
TseI	GCWGC	2 cut(s)	481, 674
Tsp45I	GTSAC	2 cut(s)	259, 781
TspDTI	ATGAA	3 cut(s)	197, 251, 631
TspRI	CASTG	2 cut(s)	145, 454
Tth111I	GACNNNGTC	1 cut(s)	746
VpaK11BI	GGWCC	4 cut(s)	18, 67, 215, 359
VspI	ATTAAT	1 cut(s)	552
XceI	RCATGY	2 cut(s)	95, 439
XmiI	GTMKAC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.