AT4G24175

Protein of unknown function (DUF615)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011405
Physical Location & Seq
Forward (+)
12546895 .. 12549017
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24175.2

Sequence Viewer

Length: 921 bp
ATGGCGCAACTAATACGACCAATAAGGCAATTGTCGCCGCAATGTAATCACCATTTTCGTAATCTCCGGTATTTGTTTTCGAAAAAGCTACCGAACCCACCTTCTTCTATCCCCACTCTTCTTCTCTTCTCGTCTTTCTCCACTGAAAGGTCTCCACCTCGTCGGCGAATTCGTCCCGCGCCACCGGAAGCTTTAAAGCCTACTGTTATTGTTGCCGAAGAAGATGGTGATAACGATGGTTACGAGTCTGATTCGTTGAGGAGTCGTAACCAGCGGAAGCGTGATGCTCGCCGTGCCGTTAAATGGGGTATGGAACTTGCTTCCTTCTCCGGTGATCAGGTTAAGCAGATTCTGAAAGCTGCGTCGCTTGGTGAAGAGGTTTATGATGCATTGATGCTTGCGAAGAGACTAGGCTCGGATGTTCGAGAAGGAAAGCGTAGACATTTCAACTATATTGGGAAATTGTTGCGTGAAGTTGAACCTGATTTGATGGACACTCTGATTAATGCTACAAAGCAGGGTGATCACTCAACGCTGCAGACGCTGATTAGTTCAGCAAAGGATGTCGCAGATGATGTTGGAGACAGTTATGATGATGATACAGAAACAGAGTCAGAAGATGAAGAGGAGGGGTCTGACGAATATACGGCTATGGCTGCGAGATGGTTTGATGGCCTAATCAGTCAAAATGTGGAACTTACAAAGGAGGTTTATTCTCTTCAGAGTGTTGATTTCGATAGACAGGAATTGCGTAAACTTGTTCGGAAAGTACAGTTGGTTCATGAGCAAAGAAAAGGCACAACAGAGGAGAAGCAGAAAGAAGTTGAGGCTGCATTAGTGACTGCTGAAAAGTCTCTGAATCAATTCCTCTGCTCCATGGCGAAACAAGTGCACAGTGAGCAGACTGATTTGTACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF615

Protein Analysis

306

Amino Acids

34.9

Weight (kDa)

5.57

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DarP PF04751 87 - 178 7.4e-20 Dual-action ribosomal maturation protein DarP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24175 AT4G24175
fragaria_vesca FvH4_2g38330
malus_domestica MD08G1011800.v1.1 MD08G1012000.v1.1
prunus_persica Prupe.1G364300_v2.0.a1
pyrus_communis pycom08g01020 pycom08g01050 pycom15g00990
rosa_chinensis RchiOBHm_Chr6g0303031
rosa_laevigata RLG00000011114
rosa_multiflora Rmu_ssc0000460.1_g000031
rosa_roxburghii Rroxscaffold_7G00165100
rosa_rugosa Rorug06G0318800.1 Rorug06G0318900.1
rosa_samantha Rh6AG432400 Rh6BG470200 Rh6CG444800 Rh6DG431500
rosa_wichuraiana Rw6G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 439
AccII CGCG 1 cut(s) 179
AciI CCGC 3 cut(s) 38, 177, 274
AcsI RAATTY 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 704
AfaI GTAC 2 cut(s) 771, 914
AfiI CCNNNNNNNGG 2 cut(s) 147, 303
AgsI TTSAA 2 cut(s) 448, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AluBI AGCT 3 cut(s) 88, 191, 359
AluI AGCT 3 cut(s) 88, 191, 359
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 4 cut(s) 156, 400, 576, 858
Alw44I GTGCAC 1 cut(s) 890
AlwNI CAGNNNCTG 2 cut(s) 352, 544
AoxI GGCC 1 cut(s) 673
ApaLI GTGCAC 1 cut(s) 890
ApeKI GCWGC 4 cut(s) 359, 535, 656, 830
ApoI RAATTY 1 cut(s) 168
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 2 cut(s) 7, 181
AsuHPI GGTGA 5 cut(s) 41, 239, 344, 383, 533
AsuII TTCGAA 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 4 cut(s) 346, 522, 643, 817
BccI CCATC 5 cut(s) 218, 230, 484, 657, 665
BceAI ACGGC 3 cut(s) 276, 281, 663
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BclI TGATCA 2 cut(s) 334, 523
BcoDI GTCTC 4 cut(s) 156, 400, 576, 858
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 536
BisI GCNGC 5 cut(s) 38, 360, 536, 657, 831
BlsI GCNGC 5 cut(s) 39, 361, 537, 658, 832
BmsI GCATC 3 cut(s) 274, 376, 384
Bpu14I TTCGAA 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 876
BsaWI WCCGGW 3 cut(s) 66, 184, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 303
Bse3DI GCAATG 1 cut(s) 47
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 2 cut(s) 424, 568
BseLI CCNNNNNNNGG 2 cut(s) 147, 303
BseMI GCAATG 1 cut(s) 47
BseRI GAGGAG 3 cut(s) 274, 641, 821
BseSI GKGCMC 1 cut(s) 894
BseXI GCAGC 4 cut(s) 346, 522, 643, 817
Bsh1236I CGCG 1 cut(s) 179
BshFI GGCC 1 cut(s) 675
BsiHKAI GWGCWC 1 cut(s) 894
BsiSI CCGG 3 cut(s) 67, 185, 330
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 147, 303
BsmAI GTCTC 4 cut(s) 156, 400, 576, 858
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 675
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 894
Bsp143I GATC 2 cut(s) 334, 523
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 3 cut(s) 38, 177, 274
BspANI GGCC 1 cut(s) 675
BspFNI CGCG 1 cut(s) 179
BspHI TCATGA 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 47
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 2 cut(s) 334, 523
BssT1I CCWWGG 1 cut(s) 876
Bst4CI ACNGT 4 cut(s) 205, 587, 774, 896
Bst6I CTCTTC 6 cut(s) 123, 131, 369, 398, 618, 723
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 289, 399
BstDSI CCRYGG 1 cut(s) 876
BstF5I GGATG 2 cut(s) 424, 568
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 2 cut(s) 7, 181
BstKTI GATC 2 cut(s) 337, 526
BstMAI GTCTC 4 cut(s) 156, 400, 576, 858
BstMBI GATC 2 cut(s) 334, 523
BstMWI GCNNNNNNNGC 5 cut(s) 34, 293, 541, 656, 898
BstSFI CTRYAG 1 cut(s) 536
BstSLI GKGCMC 1 cut(s) 894
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 4 cut(s) 346, 522, 643, 817
BsuRI GGCC 1 cut(s) 675
BtgI CCRYGG 1 cut(s) 876
BtsCI GGATG 2 cut(s) 424, 568
BtsIMutI CAGTG 2 cut(s) 141, 901
Cac8I GCNNGC 2 cut(s) 289, 399
CaiI CAGNNNCTG 2 cut(s) 352, 544
CciI TCATGA 1 cut(s) 781
CfoI GCGC 2 cut(s) 7, 181
CseI GACGC 2 cut(s) 351, 550
Csp6I GTAC 2 cut(s) 770, 913
CviAII CATG 2 cut(s) 782, 877
CviJI RGCY 9 cut(s) 88, 191, 199, 359, 414, 650, 656, 675, 830
CviKI_1 RGCY 9 cut(s) 88, 191, 199, 359, 414, 650, 656, 675, 830
CviQI GTAC 2 cut(s) 770, 913
DpnI GATC 2 cut(s) 336, 525
DpnII GATC 2 cut(s) 334, 523
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 6 cut(s) 123, 131, 369, 398, 618, 723
EarI CTCTTC 6 cut(s) 123, 131, 369, 398, 618, 723
Eco130I CCWWGG 1 cut(s) 876
Eco31I GGTCTC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 876
EcoT22I ATGCAT 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 876
FaeI CATG 2 cut(s) 785, 880
FaiI YATR 9 cut(s) 311, 384, 453, 591, 645, 653, 783, 878, 919
FaqI GGGAC 1 cut(s) 159
FatI CATG 2 cut(s) 781, 876
FauI CCCGC 1 cut(s) 184
FbaI TGATCA 2 cut(s) 334, 523
FblI GTMKAC 1 cut(s) 439
Fnu4HI GCNGC 5 cut(s) 38, 360, 536, 657, 831
FokI GGATG 2 cut(s) 431, 575
Fsp4HI GCNGC 5 cut(s) 38, 360, 536, 657, 831
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 6, 180
GluI GCNGC 5 cut(s) 38, 360, 536, 657, 831
HaeIII GGCC 1 cut(s) 675
HapII CCGG 3 cut(s) 67, 185, 330
HgaI GACGC 2 cut(s) 351, 550
HhaI GCGC 2 cut(s) 7, 181
Hin1II CATG 2 cut(s) 785, 880
Hin6I GCGC 2 cut(s) 5, 179
HinP1I GCGC 2 cut(s) 5, 179
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 6 cut(s) 245, 251, 262, 349, 611, 859
HpaII CCGG 3 cut(s) 67, 185, 330
HphI GGTGA 5 cut(s) 41, 239, 344, 383, 533
Hpy166II GTNNAC 3 cut(s) 440, 755, 892
Hpy188I TCNGA 9 cut(s) 250, 354, 418, 501, 616, 637, 723, 765, 858
Hpy188III TCNNGA 2 cut(s) 425, 782
Hpy8I GTNNAC 3 cut(s) 440, 755, 892
Hpy99I CGWCG 2 cut(s) 165, 367
HpyAV CCTTC 3 cut(s) 111, 334, 422
HpyCH4III ACNGT 4 cut(s) 205, 587, 774, 896
HpyCH4V TGCA 4 cut(s) 389, 538, 833, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 293, 541, 656, 898
Hsp92II CATG 2 cut(s) 785, 880
HspAI GCGC 2 cut(s) 5, 179
Ksp22I TGATCA 2 cut(s) 334, 523
Kzo9I GATC 2 cut(s) 334, 523
LmnI GCTCC 1 cut(s) 878
LpnPI CCDG 8 cut(s) 80, 198, 284, 323, 343, 495, 503, 728
Lsp1109I GCAGC 4 cut(s) 346, 522, 643, 817
LweI GCATC 3 cut(s) 274, 376, 384
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 3 cut(s) 239, 266, 838
MalI GATC 2 cut(s) 336, 525
MboI GATC 2 cut(s) 334, 523
MfeI CAATTG 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 894
MluCI AATT 5 cut(s) 29, 168, 461, 746, 863
MlyI GAGTC 3 cut(s) 254, 271, 620
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 9 cut(s) 168, 252, 370, 619, 622, 700, 799, 820, 878
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 4 cut(s) 194, 300, 342, 504
MspA1I CMGCKG 1 cut(s) 274
MspI CCGG 3 cut(s) 67, 185, 330
MunI CAATTG 1 cut(s) 29
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 5 cut(s) 34, 293, 541, 656, 898
NcoI CCATGG 1 cut(s) 876
NdeII GATC 2 cut(s) 334, 523
NlaIII CATG 2 cut(s) 785, 880
NmuCI GTSAC 1 cut(s) 838
NsiI ATGCAT 1 cut(s) 391
NspV TTCGAA 1 cut(s) 80
PagI TCATGA 1 cut(s) 781
PcsI WCGNNNNNNNCGW 2 cut(s) 169, 240
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 3 cut(s) 251, 349, 859
PkrI GCNGC 5 cut(s) 39, 361, 537, 658, 832
PleI GAGTC 3 cut(s) 253, 270, 619
PpsI GAGTC 3 cut(s) 253, 270, 619
PshBI ATTAAT 1 cut(s) 504
PsrI GAACNNNNNNTAC 2 cut(s) 762, 794
PstI CTGCAG 1 cut(s) 540
PstNI CAGNNNCTG 2 cut(s) 352, 544
RsaI GTAC 2 cut(s) 771, 914
RsaNI GTAC 2 cut(s) 770, 913
SaqAI TTAA 4 cut(s) 194, 300, 342, 504
SatI GCNGC 5 cut(s) 38, 360, 536, 657, 831
Sau3AI GATC 2 cut(s) 334, 523
SchI GAGTC 3 cut(s) 254, 271, 620
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 3 cut(s) 274, 376, 384
SfcI CTRYAG 1 cut(s) 536
SfuI TTCGAA 1 cut(s) 80
Sse9I AATT 5 cut(s) 29, 168, 461, 746, 863
SsiI CCGC 3 cut(s) 38, 177, 274
SspMI CTAG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 876
TaaI ACNGT 4 cut(s) 205, 587, 774, 896
TaqI TCGA 3 cut(s) 80, 424, 735
TasI AATT 5 cut(s) 29, 168, 461, 746, 863
TatI WGTACW 2 cut(s) 769, 912
TauI GCSGC 1 cut(s) 40
TfiI GAWTC 3 cut(s) 251, 349, 859
Tru1I TTAA 4 cut(s) 194, 300, 342, 504
Tru9I TTAA 4 cut(s) 194, 300, 342, 504
TscAI CASTG 2 cut(s) 148, 901
TseFI GTSAC 1 cut(s) 838
TseI GCWGC 4 cut(s) 359, 535, 656, 830
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 636, 770
TspRI CASTG 2 cut(s) 148, 901
VneI GTGCAC 1 cut(s) 890
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.