Prupe.1G364300_v2.0.a1

Protein of unknown function (DUF615)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011405
Physical Location & Seq
Reverse (-)
33485562 .. 33487598
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G364300.1

Sequence Viewer

Length: 900 bp
ATGGCTCAAATGGGACGGCTTCTTGTAAGGCAATGGCCGGTGCTGCAGCAGCATTGCTGTACCTTCCATCATCTTCTCTACTCGCCTTTACTTCCAGTAACCACCAAAACTGGTTCCCATCGTTTCTCTTTGACGAAAGTGCACTTGGCTACTCGCGGCGTCCATAAATTGTTACGCGGACTCAGACCCTCCGACTACCAAGATGCTAACATCGGCAGTTCGGGTTCGGGTTCGGGTTCGGATTCGGATTCGGTTACATATAAGAGCCGCAACGAGTTGAAGCGCCACGCCCGCCGTGCGGTCCGCTGGGCTATGGACCTCTCCTCCTTCTCCACCCCTCAAATCAAACGCATTCTCAGAGTGGCTTCTCTGGACCAAGACGTGCTGGATGCTCTGATTTTAGTGAAGAAATTTGGACCTGATGTCCGAGAAGGGAAGAGAAGGCAGTTCAATTATATTGGAAAAATGCTGCGAGAAGTGGAGCCGGATTTGATGGATGCTTTAATTCAGGCTACAAAAGACAGTGACGAAAGTAAGCTGCAAGCTTTATCTGGTCCAGAGACATTGAGCATTGATGATAATGAGGAGCAAGAAGAAGCGGAAGAAACTGATTATGAGGAGGAAGAAGAGGGTTCTCACATTGATGTAGCTACCAGATGGTTTGACGGTCTGATCAATAAGGACGTTCAGATCACCAATGAAGTATATTCAATTTCGAATGTTGAGTTTGACCGCCAGGAATTGCGAAAACTTGTCCGTCGAGTGCATTCAGGTTTGGAAGACAAAGTCAATTCAGAGGAGAATGGGGGAGCGAAAGATGCAGCAAGAGTGAGTGCTGAAAAGTCACTCACCAGGTTCCTTTGTTCCCTTGCTAAAAGTAGCCTAGTGATTGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF615

Protein Analysis

300

Amino Acids

33.79

Weight (kDa)

6.03

Isoelectric Point (pI)

59.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011405)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24175 AT4G24175
fragaria_vesca FvH4_2g38330
malus_domestica MD08G1011800.v1.1 MD08G1012000.v1.1
prunus_persica Prupe.1G364300_v2.0.a1
pyrus_communis pycom08g01020 pycom08g01050 pycom15g00990
rosa_chinensis RchiOBHm_Chr6g0303031
rosa_laevigata RLG00000011114
rosa_multiflora Rmu_ssc0000460.1_g000031
rosa_roxburghii Rroxscaffold_7G00165100
rosa_rugosa Rorug06G0318800.1 Rorug06G0318900.1
rosa_samantha Rh6AG432400 Rh6BG470200 Rh6CG444800 Rh6DG431500
rosa_wichuraiana Rw6G037480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 156, 177
AciI CCGC 8 cut(s) 156, 177, 268, 292, 299, 304, 599, 733
AcoI YGGCCR 1 cut(s) 35
AcsI RAATTY 1 cut(s) 410
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 280, 451, 711
AhdI GACNNNNNGTC 1 cut(s) 422
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 735, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 3 cut(s) 538, 545, 650
AluI AGCT 3 cut(s) 538, 545, 650
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 554
Alw44I GTGCAC 1 cut(s) 140
AoxI GGCC 1 cut(s) 35
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 6 cut(s) 43, 46, 49, 469, 538, 821
ApoI RAATTY 1 cut(s) 410
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 5 cut(s) 301, 316, 373, 416, 554
AsuHPI GGTGA 2 cut(s) 685, 841
AsuII TTCGAA 1 cut(s) 716
AvaII GGWCC 5 cut(s) 301, 316, 373, 416, 554
BaeGI GKGCMC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 786
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 6 cut(s) 30, 58, 61, 456, 525, 833
BccI CCATC 4 cut(s) 75, 126, 487, 651
BceAI ACGGC 2 cut(s) 32, 279
BciT130I CCWGG 2 cut(s) 737, 853
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 8 cut(s) 44, 47, 50, 157, 268, 470, 539, 822
BlsI GCNGC 8 cut(s) 45, 48, 51, 158, 269, 471, 540, 823
Bme1390I CCNGG 2 cut(s) 737, 853
Bme18I GGWCC 5 cut(s) 301, 316, 373, 416, 554
BmeRI GACNNNNNGTC 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 5 cut(s) 301, 316, 373, 416, 554
BmiI GGNNCC 3 cut(s) 115, 483, 857
BmrFI CCNGG 2 cut(s) 737, 853
BmsI GCATC 4 cut(s) 193, 379, 487, 808
BpiI GAAGAC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 2 cut(s) 95, 115
Bse3DI GCAATG 2 cut(s) 38, 52
BseBI CCWGG 2 cut(s) 737, 853
BseGI GGATG 2 cut(s) 394, 502
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 2 cut(s) 38, 52
BseMII CTCAG 2 cut(s) 196, 370
BseNI ACTGG 2 cut(s) 95, 115
BseRI GAGGAG 4 cut(s) 313, 599, 632, 812
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 6 cut(s) 30, 58, 61, 456, 525, 833
BseYI CCCAGC 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 156, 177
BshFI GGCC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 38, 485
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 351, 766
BsnI GGCC 1 cut(s) 37
Bsp119I TTCGAA 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 672, 690
BspACI CCGC 8 cut(s) 156, 177, 268, 292, 299, 304, 599, 733
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 195, 369
BspFNI CGCG 2 cut(s) 156, 177
BspLI GGNNCC 3 cut(s) 115, 483, 857
BspMAI CTGCAG 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 716
BsrDI GCAATG 2 cut(s) 38, 52
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 2 cut(s) 95, 115
BssAI RCCGGY 1 cut(s) 37
BssMI GATC 2 cut(s) 672, 690
BssNI GRCGYC 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 737, 853
Bst4CI ACNGT 2 cut(s) 524, 668
Bst6I CTCTTC 2 cut(s) 431, 621
BstACI GRCGYC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 716
BstC8I GCNNGC 2 cut(s) 292, 543
BstDEI CTNAG 2 cut(s) 182, 356
BstF5I GGATG 2 cut(s) 394, 502
BstFNI CGCG 2 cut(s) 156, 177
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 2 cut(s) 675, 693
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 2 cut(s) 672, 690
BstMWI GCNNNNNNNGC 5 cut(s) 43, 49, 291, 296, 818
BstNI CCWGG 2 cut(s) 737, 853
BstSCI CCNGG 2 cut(s) 735, 851
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 2 cut(s) 156, 177
BstV1I GCAGC 6 cut(s) 30, 58, 61, 456, 525, 833
BstV2I GAAGAC 1 cut(s) 786
BsuRI GGCC 1 cut(s) 37
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 394, 502
BtsIMutI CAGTG 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 292, 543
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 5 cut(s) 301, 316, 373, 416, 554
CpoI CGGWCCG 1 cut(s) 301
CseI GACGC 1 cut(s) 148
CsiI ACCWGGT 1 cut(s) 851
Csp6I GTAC 1 cut(s) 60
CspI CGGWCCG 1 cut(s) 301
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 2 cut(s) 182, 356
DpnI GATC 2 cut(s) 674, 692
DpnII GATC 2 cut(s) 672, 690
DriI GACNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 431, 621
Eam1105I GACNNNNNGTC 1 cut(s) 422
EarI CTCTTC 2 cut(s) 431, 621
Eco47I GGWCC 5 cut(s) 301, 316, 373, 416, 554
EcoRII CCWGG 2 cut(s) 735, 851
FaiI YATR 8 cut(s) 165, 259, 261, 314, 456, 615, 706, 896
FaqI GGGAC 1 cut(s) 27
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 8 cut(s) 44, 47, 50, 157, 268, 470, 539, 822
FokI GGATG 2 cut(s) 401, 509
Fsp4HI GCNGC 8 cut(s) 44, 47, 50, 157, 268, 470, 539, 822
FspBI CTAG 1 cut(s) 884
GlaI GCGC 1 cut(s) 284
GluI GCNGC 8 cut(s) 44, 47, 50, 157, 268, 470, 539, 822
GsaI CCCAGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 1 cut(s) 37
HapII CCGG 2 cut(s) 38, 485
HgaI GACGC 1 cut(s) 148
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 159
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 543
HinfI GANTC 3 cut(s) 180, 242, 248
HpaII CCGG 2 cut(s) 38, 485
HphI GGTGA 2 cut(s) 685, 841
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 371, 557
Hpy8I GTNNAC 1 cut(s) 142
Hpy99I CGWCG 1 cut(s) 762
HpyAV CCTTC 4 cut(s) 73, 337, 425, 435
HpyCH4III ACNGT 2 cut(s) 524, 668
HpyCH4IV ACGT 2 cut(s) 381, 684
HpyCH4V TGCA 5 cut(s) 46, 142, 541, 766, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 49, 291, 296, 818
HpyF3I CTNAG 2 cut(s) 182, 356
HpySE526I ACGT 2 cut(s) 381, 684
Hsp92I GRCGYC 1 cut(s) 159
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 2 cut(s) 672, 690
LmnI GCTCC 3 cut(s) 481, 586, 809
Lsp1109I GCAGC 6 cut(s) 30, 58, 61, 456, 525, 833
LweI GCATC 4 cut(s) 193, 379, 487, 808
MabI ACCWGGT 1 cut(s) 851
MaeI CTAG 1 cut(s) 884
MaeII ACGT 2 cut(s) 381, 684
MaeIII GTNAC 5 cut(s) 97, 171, 253, 524, 843
MalI GATC 2 cut(s) 674, 692
MboI GATC 2 cut(s) 672, 690
MboII GAAGA 8 cut(s) 65, 418, 448, 605, 614, 635, 638, 791
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 7 cut(s) 167, 410, 451, 504, 711, 740, 790
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 9 cut(s) 199, 329, 334, 348, 577, 610, 613, 622, 790
MseI TTAA 1 cut(s) 503
MslI CAYNNNNRTG 1 cut(s) 642
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 38, 485
MspR9I CCNGG 2 cut(s) 737, 853
Mva1269I GAATGC 2 cut(s) 351, 766
MvaI CCWGG 2 cut(s) 737, 853
MvnI CGCG 2 cut(s) 156, 177
MwoI GCNNNNNNNGC 5 cut(s) 43, 49, 291, 296, 818
NdeII GATC 2 cut(s) 672, 690
NlaIV GGNNCC 3 cut(s) 115, 483, 857
NmuCI GTSAC 2 cut(s) 524, 843
NspV TTCGAA 1 cut(s) 716
PctI GAATGC 2 cut(s) 351, 766
PfeI GAWTC 2 cut(s) 242, 248
PflFI GACNNNGTC 1 cut(s) 785
PkrI GCNGC 8 cut(s) 45, 48, 51, 158, 269, 471, 540, 823
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 2 cut(s) 735, 851
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 2 cut(s) 735, 851
PspN4I GGNNCC 3 cut(s) 115, 483, 857
PspPI GGNCC 5 cut(s) 301, 316, 373, 416, 554
PstI CTGCAG 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 785
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 642
Rsr2I CGGWCCG 1 cut(s) 301
RsrII CGGWCCG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 8 cut(s) 44, 47, 50, 157, 268, 470, 539, 822
Sau3AI GATC 2 cut(s) 672, 690
Sau96I GGNCC 5 cut(s) 301, 316, 373, 416, 554
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 2 cut(s) 737, 853
SduI GDGCHC 1 cut(s) 144
SexAI ACCWGGT 1 cut(s) 851
SfaNI GCATC 4 cut(s) 193, 379, 487, 808
SfcI CTRYAG 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 716
SinI GGWCC 5 cut(s) 301, 316, 373, 416, 554
SmiMI CAYNNNNRTG 1 cut(s) 642
Sse9I AATT 7 cut(s) 167, 410, 451, 504, 711, 740, 790
SsiI CCGC 8 cut(s) 156, 177, 268, 292, 299, 304, 599, 733
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 2 cut(s) 735, 851
TaaI ACNGT 2 cut(s) 524, 668
TaiI ACGT 2 cut(s) 384, 687
TaqI TCGA 2 cut(s) 716, 760
TasI AATT 7 cut(s) 167, 410, 451, 504, 711, 740, 790
TauI GCSGC 2 cut(s) 159, 270
TfiI GAWTC 2 cut(s) 242, 248
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 2 cut(s) 524, 843
TseI GCWGC 6 cut(s) 43, 46, 49, 469, 538, 821
Tsp45I GTSAC 2 cut(s) 524, 843
TspDTI ATGAA 1 cut(s) 714
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 1 cut(s) 529
Tth111I GACNNNGTC 1 cut(s) 785
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 5 cut(s) 301, 316, 373, 416, 554
XapI RAATTY 1 cut(s) 410
XspI CTAG 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.