Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Forward (+)

12571538 .. 12573783

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGACTGTTGAGCTGATGATGAGCAGCTACAGCGGCGGCGGAGGAGGAGGTGATGGTTTTCCTGCAATCGCCGCGGCGGCGAAAATGGAAGATACCGCTTTGAGAGAAGCTGCTTCTGCAGGGATTCACGGTGTGGAGGAGTTTCTTAAACTGATCGGTCAAAGTCAACAACCAACGGAGAAGAGTCAGACGGAGATAACCGCGGTGACTGACGTCGCCGTTAACAGCTTCAAGAAGGTCATTTCTCTACTCGGTAGATCTAGAACCGGACACGCTAGATTCAGACGAGCTCCCGCGTCAACGCAAACGCCGTTTAAGCAAACGCCGGTGGTTGAGGAGGAGGTGGAGGTGGAGGAGAAGAAGCCAGAAACAAGCTCCGTGTTAACAAAACAGAAAACAGAGCAATATCACGGTGGTGGATCTGCGTTTAGAGTTTATTGTCCAACACCAATTCATCGTCGTCCTCCTCTATCACACAATAACAACAACAATCAGAATCAAACAAAGAACGGTTCGTCTTCTTCATCTCCTCCGATGCTCGCAAACGGAGCACCGTCAACGATAAACTTTGCGCCGTCACCACCAGTCTCAGCGACGAACTCATTCATGTCTTCTCATAGATGTGACACCGATAGTACTCACATGTCATCAGGATTCGAGTTCACTAACCCATCTCAGCTCTCTGGTTCGAGAGGTAAACCTCCTTTATCATCAGCTTCGTTGAAGAGAAGATGTAATTCATCTCCCTCAAGCCGTTGCCATTGCTCCAAGAAAAGGAAATCAAGAGTAAAAAGAGTGATTAGAGTTCCAGCAGTAAGTAGCAAAATGGCTGATATACCATCAGATGAGTTTTCATGGAGAAAATATGGTCAAAAACCAATCAAAGGCTCTCCTCATCCTCGGGGATATTACAAGTGCAGCAGTGTAAGAGGTTGTCCGGCGCGTAAGCATGTGGAGCGTGCACTAGATGATGCGATGATGCTAATCGTGACGTACGAAGGAGACCACAACCATGCTTTGGTTCTCGAGACGACGACGATGAATCATGACAAAACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

353

Amino Acids

38.35

Weight (kDa)

9.63

Isoelectric Point (pI)

60.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	244 - 278	2.4e-15	Plant zinc cluster domain
WRKY	PF03106	282 - 301	5.2e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccII	CGCG	4 cut(s)	74, 203, 296, 943
AclWI	GGATC	1 cut(s)	427
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	133
AfaI	GTAC	2 cut(s)	637, 995
AfiI	CCNNNNNNNGG	3 cut(s)	774, 884, 1018
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	2 cut(s)	232, 724
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	8 cut(s)	13, 27, 110, 228, 290, 375, 679, 716
AluI	AGCT	8 cut(s)	13, 27, 110, 228, 290, 375, 679, 716
Alw21I	GWGCWC	3 cut(s)	292, 553, 964
Alw26I	GTCTC	3 cut(s)	592, 996, 1022
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	1 cut(s)	427
Ama87I	CYCGRG	2 cut(s)	900, 1025
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	3 cut(s)	24, 110, 918
Asp700I	GAANNNNTTC	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	574, 943
AsuHPI	GGTGA	3 cut(s)	62, 217, 570
AvaI	CYCGRG	2 cut(s)	900, 1025
BaeGI	GKGCMC	1 cut(s)	964
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	510, 603
Bbv12I	GWGCWC	3 cut(s)	292, 553, 964
BbvI	GCAGC	3 cut(s)	36, 97, 930
BccI	CCATC	3 cut(s)	47, 679, 847
BceAI	ACGGC	4 cut(s)	203, 295, 559, 738
BcoDI	GTCTC	3 cut(s)	592, 996, 1022
BfaI	CTAG	3 cut(s)	261, 276, 965
BfmI	CTRYAG	2 cut(s)	28, 117
BglI	GCCNNNNNGGC	1 cut(s)	77
BglII	AGATCT	1 cut(s)	257
BisI	GCNGC	8 cut(s)	25, 34, 37, 72, 75, 78, 111, 919
BlsI	GCNGC	8 cut(s)	26, 35, 38, 73, 76, 79, 112, 920
BmcAI	AGTACT	1 cut(s)	637
BmeT110I	CYCGRG	2 cut(s)	900, 1025
BmsI	GCATC	3 cut(s)	525, 961, 969
BoxI	GACNNNNGTC	1 cut(s)	212
BpiI	GAAGAC	2 cut(s)	510, 603
BpuEI	CTTGAG	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	996
BsaJI	CCNNGG	3 cut(s)	72, 201, 899
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	3 cut(s)	774, 884, 1018
Bse118I	RCCGGY	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	983
BseDI	CCNNGG	3 cut(s)	72, 201, 899
BseGI	GGATG	1 cut(s)	895
BseJI	GATNNNNATC	1 cut(s)	983
BseLI	CCNNNNNNNGG	3 cut(s)	774, 884, 1018
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	2 cut(s)	603, 689
BseNI	ACTGG	1 cut(s)	584
BseRI	GAGGAG	9 cut(s)	57, 60, 152, 350, 353, 368, 456, 519, 882
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	3 cut(s)	36, 97, 930
BsgI	GTGCAG	1 cut(s)	937
Bsh1236I	CGCG	4 cut(s)	74, 203, 296, 943
BsiHKAI	GWGCWC	3 cut(s)	292, 553, 964
BsiHKCI	CYCGRG	2 cut(s)	900, 1025
BsiSI	CCGG	3 cut(s)	267, 326, 938
BsiWI	CGTACG	1 cut(s)	993
BslI	CCNNNNNNNGG	3 cut(s)	774, 884, 1018
BsmAI	GTCTC	3 cut(s)	592, 996, 1022
BsmBI	CGTCTC	1 cut(s)	1022
Bso31I	GGTCTC	1 cut(s)	996
BsoBI	CYCGRG	2 cut(s)	900, 1025
Bsp1286I	GDGCHC	3 cut(s)	292, 553, 964
Bsp143I	GATC	3 cut(s)	153, 257, 419
BspCNI	CTCAG	2 cut(s)	602, 688
BspFNI	CGCG	4 cut(s)	74, 203, 296, 943
BspHI	TCATGA	1 cut(s)	1045
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	1 cut(s)	427
BspTNI	GGTCTC	1 cut(s)	996
BsrDI	GCAATG	1 cut(s)	760
BsrFI	RCCGGY	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	584
BssAI	RCCGGY	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	72, 201, 899
BssMI	GATC	3 cut(s)	153, 257, 419
BssNI	GRCGYC	1 cut(s)	213
Bst4CI	ACNGT	5 cut(s)	7, 131, 413, 512, 555
Bst6I	CTCTTC	2 cut(s)	176, 719
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	540, 960
BstDEI	CTNAG	2 cut(s)	589, 675
BstDSI	CCRYGG	2 cut(s)	72, 201
BstF5I	GGATG	1 cut(s)	895
BstFNI	CGCG	4 cut(s)	74, 203, 296, 943
BstHHI	GCGC	2 cut(s)	574, 943
BstKTI	GATC	3 cut(s)	156, 260, 422
BstMAI	GTCTC	3 cut(s)	592, 996, 1022
BstMBI	GATC	3 cut(s)	153, 257, 419
BstMWI	GCNNNNNNNGC	8 cut(s)	30, 33, 71, 77, 116, 316, 548, 955
BstNSI	RCATGY	2 cut(s)	646, 953
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	28, 117
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	4 cut(s)	74, 203, 296, 943
BstV1I	GCAGC	3 cut(s)	36, 97, 930
BstV2I	GAAGAC	2 cut(s)	510, 603
BstX2I	RGATCY	2 cut(s)	257, 419
BstYI	RGATCY	2 cut(s)	257, 419
BtgI	CCRYGG	2 cut(s)	72, 201
BtgZI	GCGATG	1 cut(s)	989
BtsCI	GGATG	1 cut(s)	895
BtsI	GCAGTG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	928
Cac8I	GCNNGC	2 cut(s)	540, 960
CciI	TCATGA	1 cut(s)	1045
CfoI	GCGC	2 cut(s)	574, 943
Cfr10I	RCCGGY	1 cut(s)	325
Cfr42I	CCGCGG	2 cut(s)	75, 204
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	636, 994
CviAII	CATG	6 cut(s)	607, 643, 855, 950, 1013, 1046
CviQI	GTAC	2 cut(s)	636, 994
DdeI	CTNAG	2 cut(s)	589, 675
DpnI	GATC	3 cut(s)	155, 259, 421
DpnII	GATC	3 cut(s)	153, 257, 419
DraIII	CACNNNGTG	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	176, 719
EarI	CTCTTC	2 cut(s)	176, 719
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	996
Eco53kI	GAGCTC	1 cut(s)	290
Eco88I	CYCGRG	2 cut(s)	900, 1025
EcoICRI	GAGCTC	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	1022
FaeI	CATG	6 cut(s)	610, 646, 858, 953, 1016, 1049
FaiI	YATR	9 cut(s)	608, 618, 644, 836, 856, 867, 951, 1014, 1047
FatI	CATG	6 cut(s)	606, 642, 854, 949, 1012, 1045
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	8 cut(s)	25, 34, 37, 72, 75, 78, 111, 919
FokI	GGATG	1 cut(s)	882
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	8 cut(s)	25, 34, 37, 72, 75, 78, 111, 919
FspBI	CTAG	3 cut(s)	261, 276, 965
GlaI	GCGC	2 cut(s)	573, 942
GluI	GCNGC	8 cut(s)	25, 34, 37, 72, 75, 78, 111, 919
HapII	CCGG	3 cut(s)	267, 326, 938
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	2 cut(s)	574, 943
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	610, 646, 858, 953, 1016, 1049
Hin6I	GCGC	2 cut(s)	572, 941
HinP1I	GCGC	2 cut(s)	572, 941
HincII	GTYRAC	5 cut(s)	167, 223, 300, 384, 558
HindII	GTYRAC	5 cut(s)	167, 223, 300, 384, 558
HinfI	GANTC	6 cut(s)	124, 184, 279, 496, 654, 1042
HpaI	GTTAAC	2 cut(s)	223, 384
HpaII	CCGG	3 cut(s)	267, 326, 938
HphI	GGTGA	3 cut(s)	62, 217, 570
Hpy166II	GTNNAC	8 cut(s)	167, 223, 300, 384, 558, 663, 698, 962
Hpy188I	TCNGA	5 cut(s)	189, 284, 495, 534, 844
Hpy188III	TCNNGA	9 cut(s)	232, 261, 651, 690, 783, 988, 1025, 1027, 1046
Hpy8I	GTNNAC	8 cut(s)	167, 223, 300, 384, 558, 663, 698, 962
Hpy99I	CGWCG	5 cut(s)	218, 462, 598, 1036, 1039
HpyAV	CCTTC	2 cut(s)	229, 992
HpyCH4III	ACNGT	5 cut(s)	7, 131, 413, 512, 555
HpyCH4IV	ACGT	2 cut(s)	213, 992
HpyCH4V	TGCA	4 cut(s)	65, 119, 918, 962
HpyF10VI	GCNNNNNNNGC	8 cut(s)	30, 33, 71, 77, 116, 316, 548, 955
HpyF3I	CTNAG	2 cut(s)	589, 675
HpySE526I	ACGT	2 cut(s)	213, 992
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	610, 646, 858, 953, 1016, 1049
HspAI	GCGC	2 cut(s)	572, 941
KspAI	GTTAAC	2 cut(s)	223, 384
KspI	CCGCGG	2 cut(s)	75, 204
Kzo9I	GATC	3 cut(s)	153, 257, 419
LmnI	GCTCC	5 cut(s)	295, 380, 548, 770, 955
Lsp1109I	GCAGC	3 cut(s)	36, 97, 930
LweI	GCATC	3 cut(s)	525, 961, 969
MaeI	CTAG	3 cut(s)	261, 276, 965
MaeII	ACGT	2 cut(s)	213, 992
MaeIII	GTNAC	4 cut(s)	205, 576, 623, 988
MalI	GATC	3 cut(s)	155, 259, 421
MboI	GATC	3 cut(s)	153, 257, 419
MboII	GAAGA	8 cut(s)	101, 193, 370, 510, 513, 603, 736, 741
MflI	RGATCY	2 cut(s)	257, 419
MhlI	GDGCHC	3 cut(s)	292, 553, 964
MluCI	AATT	2 cut(s)	450, 736
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	602
MseI	TTAA	4 cut(s)	147, 222, 315, 383
MslI	CAYNNNNRTG	3 cut(s)	414, 621, 1011
MspA1I	CMGCKG	3 cut(s)	33, 74, 203
MspI	CCGG	3 cut(s)	267, 326, 938
MvnI	CGCG	4 cut(s)	74, 203, 296, 943
MwoI	GCNNNNNNNGC	8 cut(s)	30, 33, 71, 77, 116, 316, 548, 955
NdeII	GATC	3 cut(s)	153, 257, 419
NlaIII	CATG	6 cut(s)	610, 646, 858, 953, 1016, 1049
NmuCI	GTSAC	4 cut(s)	205, 576, 623, 988
NspI	RCATGY	2 cut(s)	646, 953
OliI	CACNNNNGTG	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	1025
PagI	TCATGA	1 cut(s)	1045
PciI	ACATGT	1 cut(s)	642
PcsI	WCGNNNNNNNCGW	2 cut(s)	308, 993
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	5 cut(s)	124, 279, 496, 654, 1042
Pfl23II	CGTACG	1 cut(s)	993
PflMI	CCANNNNNTGG	1 cut(s)	1018
PkrI	GCNGC	8 cut(s)	26, 35, 38, 73, 76, 79, 112, 920
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PscI	ACATGT	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	292
PspLI	CGTACG	1 cut(s)	993
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	257, 419
RsaI	GTAC	2 cut(s)	637, 995
RsaNI	GTAC	2 cut(s)	636, 994
RseI	CAYNNNNRTG	3 cut(s)	414, 621, 1011
SacI	GAGCTC	1 cut(s)	292
SacII	CCGCGG	2 cut(s)	75, 204
SaqAI	TTAA	4 cut(s)	147, 222, 315, 383
SatI	GCNGC	8 cut(s)	25, 34, 37, 72, 75, 78, 111, 919
Sau3AI	GATC	3 cut(s)	153, 257, 419
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	3 cut(s)	292, 553, 964
SfaNI	GCATC	3 cut(s)	525, 961, 969
SfcI	CTRYAG	2 cut(s)	28, 117
Sfr274I	CTCGAG	1 cut(s)	1025
Sfr303I	CCGCGG	2 cut(s)	75, 204
SgrAI	CRCCGGYG	1 cut(s)	325
SgrBI	CCGCGG	2 cut(s)	75, 204
SlaI	CTCGAG	1 cut(s)	1025
SmiMI	CAYNNNNRTG	3 cut(s)	414, 621, 1011
SmlI	CTYRAG	2 cut(s)	748, 1025
SmoI	CTYRAG	2 cut(s)	748, 1025
Sse9I	AATT	2 cut(s)	450, 736
SspMI	CTAG	3 cut(s)	261, 276, 965
SstI	GAGCTC	1 cut(s)	292
TaaI	ACNGT	5 cut(s)	7, 131, 413, 512, 555
TaiI	ACGT	2 cut(s)	216, 995
TaqI	TCGA	3 cut(s)	657, 689, 1026
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	450, 736
TatI	WGTACW	1 cut(s)	635
TauI	GCSGC	5 cut(s)	36, 39, 74, 77, 80
TfiI	GAWTC	5 cut(s)	124, 279, 496, 654, 1042
Tru1I	TTAA	4 cut(s)	147, 222, 315, 383
Tru9I	TTAA	4 cut(s)	147, 222, 315, 383
TscAI	CASTG	1 cut(s)	928
TseFI	GTSAC	4 cut(s)	205, 576, 623, 988
TseI	GCWGC	3 cut(s)	24, 110, 918
Tsp45I	GTSAC	4 cut(s)	205, 576, 623, 988
TspDTI	ATGAA	6 cut(s)	443, 513, 595, 729, 843, 1055
TspGWI	ACGGA	4 cut(s)	191, 206, 367, 561
TspRI	CASTG	1 cut(s)	928
Van91I	CCANNNNNTGG	1 cut(s)	1018
VneI	GTGCAC	1 cut(s)	960
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	2 cut(s)	646, 953
XhoI	CTCGAG	1 cut(s)	1025
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	3 cut(s)	261, 276, 965
ZraI	GACGTC	1 cut(s)	214
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.