Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

65844435 .. 65846106

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG477100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTGTGGACCTCATGATGGGTCTGGTTGACAGCTTTGCGGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCTTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATGGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTCATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAACAGAGCAGTCTTCATTTCAGTTTCAAGAGGCTCTAAATACGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCCATTTCTCGGCTACGCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGACGGCGAGACTACTACTCTGCAACACTCGGTGTCGTCCGGTTTTCAATTGACCAACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTGTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAGGTTTGTCTTTTCATCACCATCTCTGTATTTTCTTGATGTGGGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

243

Amino Acids

26.14

Weight (kDa)

9.11

Isoelectric Point (pI)

65.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	66
AciI	CCGC	7 cut(s)	41, 173, 182, 413, 461, 626, 629
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	4 cut(s)	19, 84, 448, 678
AflIII	ACRYGT	1 cut(s)	549
AgeI	ACCGGT	2 cut(s)	230, 397
AgsI	TTSAA	5 cut(s)	135, 329, 379, 539, 657
AhlI	ACTAGT	3 cut(s)	286, 428, 434
AluBI	AGCT	3 cut(s)	36, 114, 167
AluI	AGCT	3 cut(s)	36, 114, 167
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	82, 95
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	74, 149
ApoI	RAATTY	1 cut(s)	475
AsiGI	ACCGGT	2 cut(s)	230, 397
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	10, 254
AsuHPI	GGTGA	2 cut(s)	196, 687
AsuII	TTCGAA	2 cut(s)	247, 473
AvaII	GGWCC	2 cut(s)	10, 254
BamHI	GGATCC	1 cut(s)	87
BbsI	GAAGAC	4 cut(s)	114, 306, 353, 552
BbvI	GCAGC	2 cut(s)	86, 136
BccI	CCATC	2 cut(s)	13, 706
BceAI	ACGGC	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	3 cut(s)	286, 428, 434
BfaI	CTAG	3 cut(s)	287, 429, 435
BisI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
BlsI	GCNGC	5 cut(s)	43, 76, 151, 628, 631
BmcAI	AGTACT	1 cut(s)	433
Bme18I	GGWCC	2 cut(s)	10, 254
BmgT120I	GGNCC	2 cut(s)	10, 254
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	2 cut(s)	613, 650
BpiI	GAAGAC	4 cut(s)	114, 306, 353, 552
Bpu14I	TTCGAA	2 cut(s)	247, 473
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	78, 153
BsaWI	WCCGGW	3 cut(s)	230, 397, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 84, 448, 678
Bse118I	RCCGGY	3 cut(s)	230, 397, 457
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	2 cut(s)	78, 153
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	4 cut(s)	19, 84, 448, 678
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	86, 136
BseYI	CCCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	44
BshTI	ACCGGT	2 cut(s)	230, 397
BsiSI	CCGG	4 cut(s)	231, 398, 458, 531
BslFI	GGGAC	2 cut(s)	375, 506
BslI	CCNNNNNNNGG	4 cut(s)	19, 84, 448, 678
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	375, 506
BsnI	GGCC	1 cut(s)	44
Bsp119I	TTCGAA	2 cut(s)	247, 473
Bsp143I	GATC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	7 cut(s)	41, 173, 182, 413, 461, 626, 629
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	82, 95
BspT104I	TTCGAA	2 cut(s)	247, 473
BsrFI	RCCGGY	3 cut(s)	230, 397, 457
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	3 cut(s)	230, 397, 457
BssECI	CCNNGG	2 cut(s)	78, 153
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	4 cut(s)	48, 244, 585, 658
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	2 cut(s)	247, 473
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
BstNSI	RCATGY	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	86, 136
BstV2I	GAAGAC	4 cut(s)	114, 306, 353, 552
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	561, 664
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	230, 397, 457
Cfr13I	GGNCC	2 cut(s)	10, 254
Csp6I	GTAC	1 cut(s)	432
CspAI	ACCGGT	2 cut(s)	230, 397
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	4 cut(s)	16, 154, 178, 550
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraIII	CACNNNGTG	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	4 cut(s)	48, 244, 585, 658
EarI	CTCTTC	4 cut(s)	48, 244, 585, 658
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	10, 254
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	19, 157, 181, 553
FaiI	YATR	6 cut(s)	17, 110, 155, 179, 485, 551
FaqI	GGGAC	2 cut(s)	375, 506
FatI	CATG	4 cut(s)	15, 153, 177, 549
Fnu4HI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
FspBI	CTAG	3 cut(s)	287, 429, 435
GluI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	4 cut(s)	231, 398, 458, 531
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	19, 157, 181, 553
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HpaII	CCGG	4 cut(s)	231, 398, 458, 531
HphI	GGTGA	2 cut(s)	196, 687
Hpy166II	GTNNAC	4 cut(s)	10, 31, 275, 410
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	16, 91, 329, 657, 713
Hpy8I	GTNNAC	4 cut(s)	10, 31, 275, 410
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	19, 157, 181, 553
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	87
Lsp1109I	GCAGC	2 cut(s)	86, 136
LweI	GCATC	2 cut(s)	613, 650
MaeI	CTAG	3 cut(s)	287, 429, 435
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	233, 259
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	2 cut(s)	475, 539
MmeI	TCCRAC	1 cut(s)	195
MreI	CGCCGGCG	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	596
MslI	CAYNNNNRTG	2 cut(s)	182, 554
MspI	CCGG	4 cut(s)	231, 398, 458, 531
MunI	CAATTG	1 cut(s)	539
MwoI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
NaeI	GCCGGC	1 cut(s)	459
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	87
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	4 cut(s)	19, 157, 181, 553
NlaIV	GGNNCC	1 cut(s)	89
NmeAIII	GCCGAG	2 cut(s)	59, 428
NmuCI	GTSAC	2 cut(s)	233, 259
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	2 cut(s)	247, 473
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	191
PinAI	ACCGGT	2 cut(s)	230, 397
PkrI	GCNGC	5 cut(s)	43, 76, 151, 628, 631
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	549
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	10, 254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	2 cut(s)	182, 554
SaqAI	TTAA	1 cut(s)	596
SatI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	2 cut(s)	10, 254
ScaI	AGTACT	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	613, 650
SfuI	TTCGAA	2 cut(s)	247, 473
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	10, 254
SmiMI	CAYNNNNRTG	2 cut(s)	182, 554
SpeI	ACTAGT	3 cut(s)	286, 428, 434
Sse9I	AATT	2 cut(s)	475, 539
SsiI	CCGC	7 cut(s)	41, 173, 182, 413, 461, 626, 629
SspMI	CTAG	3 cut(s)	287, 429, 435
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	2 cut(s)	247, 473
TasI	AATT	2 cut(s)	475, 539
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	3 cut(s)	44, 629, 632
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TscAI	CASTG	2 cut(s)	561, 671
TseFI	GTSAC	2 cut(s)	233, 259
TseI	GCWGC	2 cut(s)	74, 149
Tsp45I	GTSAC	2 cut(s)	233, 259
TspDTI	ATGAA	4 cut(s)	97, 198, 306, 681
TspRI	CASTG	2 cut(s)	561, 671
VpaK11BI	GGWCC	2 cut(s)	10, 254
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	287, 429, 435
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.