Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

51448434 .. 51449313

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0367200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGTGGCGAACAAGGTGGTGAGCGCCGGAATGCGCTTGGCGAACAACAGCACGGTGATAAGCGTGTGCCTAGTCGGATCCTTCATTGCTCTGAGCGCAAGGTCAGTGAAGCAGCAAAACAAAATCGAAGCTCTAGAGGCGGAGAAGGACTCCCTCATCAAATCGAACAAGGCCACCAAGAAGACCATGTGGGACTGGAAGCAACAGCTCTATGCCGAAGCCGGCACCGACTCCGCTCTCGTCCCTCTCGCCAGACTCAAGGCCATCTACGGCGAAGCCCCAACTCCCCCAATCGCTGTGAAGGAGGATTCGAAATCTGCAGACGCTAAATTTGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

114

Amino Acids

12.28

Weight (kDa)

9.27

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AccBSI	CCGCTC	1 cut(s)	239
AciI	CCGC	2 cut(s)	143, 237
AclWI	GGATC	2 cut(s)	75, 88
AcsI	RAATTY	1 cut(s)	332
AluBI	AGCT	2 cut(s)	134, 211
AluI	AGCT	2 cut(s)	134, 211
AlwI	GGATC	2 cut(s)	75, 88
AoxI	GGCC	2 cut(s)	174, 264
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	1 cut(s)	317
AspLEI	GCGC	3 cut(s)	29, 39, 101
AsuHPI	GGTGA	2 cut(s)	34, 70
AsuII	TTCGAA	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	275
BceAI	ACGGC	1 cut(s)	289
BfaI	CTAG	2 cut(s)	74, 137
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	82, 229
BpiI	GAAGAC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu14I	TTCGAA	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	203
Bse3DI	GCAATG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	127
BshFI	GGCC	2 cut(s)	176, 266
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	2 cut(s)	30, 225
BslFI	GGGAC	2 cut(s)	209, 230
BsmFI	GGGAC	2 cut(s)	209, 230
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	176, 266
Bsp119I	TTCGAA	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	143, 237
BspANI	GGCC	2 cut(s)	176, 266
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	82, 229
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	75, 88
BspT104I	TTCGAA	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	227
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	3 cut(s)	29, 39, 101
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 140
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	176, 266
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	226
CfoI	GCGC	3 cut(s)	29, 39, 101
Cfr10I	RCCGGY	1 cut(s)	224
CseI	GACGC	1 cut(s)	335
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	134, 176, 211, 224, 266, 281
CviKI_1	RGCY	6 cut(s)	134, 176, 211, 224, 266, 281
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	158
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	191, 216
FaqI	GGGAC	2 cut(s)	209, 230
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	2 cut(s)	74, 137
GlaI	GCGC	3 cut(s)	28, 38, 100
GluI	GCNGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	176, 266
HapII	CCGG	2 cut(s)	30, 225
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	3 cut(s)	29, 39, 101
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	3 cut(s)	27, 37, 99
HinP1I	GCGC	3 cut(s)	27, 37, 99
HinfI	GANTC	4 cut(s)	152, 233, 258, 311
HpaII	CCGG	2 cut(s)	30, 225
HphI	GGTGA	2 cut(s)	34, 70
Hpy188I	TCNGA	3 cut(s)	80, 96, 344
Hpy188III	TCNNGA	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	94, 142, 298
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 140
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	3 cut(s)	27, 37, 99
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	80
LpnPI	CCDG	4 cut(s)	43, 184, 238, 268
Lsp1109I	GCAGC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	74, 137
MalI	GATC	1 cut(s)	82
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	1 cut(s)	80
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	3 cut(s)	146, 227, 252
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	133, 167, 258, 301
MroNI	GCCGGC	1 cut(s)	224
MspI	CCGG	2 cut(s)	30, 225
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	98, 140
NaeI	GCCGGC	1 cut(s)	226
NdeII	GATC	1 cut(s)	80
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	82, 229
NspV	TTCGAA	1 cut(s)	314
PctI	GAATGC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	3 cut(s)	146, 227, 252
PpsI	GAGTC	3 cut(s)	146, 227, 252
PspN4I	GGNNCC	2 cut(s)	82, 229
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	80
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	80
SchI	GAGTC	3 cut(s)	146, 227, 252
SetI	ASST	5 cut(s)	9, 21, 107, 136, 213
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	2 cut(s)	143, 237
SspMI	CTAG	2 cut(s)	74, 137
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	129, 167, 314
TasI	AATT	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	311
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	76
TspRI	CASTG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	332
XbaI	TCTAGA	1 cut(s)	136
XspI	CTAG	2 cut(s)	74, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.