Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Forward (+)

36937084 .. 36942350

Gene Structure 5267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G431100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTGTGGAGCTCATGATGGGATTTATTGACAGTTTTGCAGCGCAAATGGAAGAGAATGCTGTGAAGGAAGCGGCCTCAGCTGGAATTCAAAGCGTCGAGAAGTTCATAAGCTTGATTTCGCAACACCACCACCAATTCCAAGACTCTTCTTTTTCTTCCTCATCAAACCCTGAAGCCGCTACAGAGTACAAAGCTGTTGCAGACATGGCCGTGAACAAGTTCAGGAAGGTCATTTCATTACTGGACAAAGGAAGAACCGGCCACGCTCGGTTCAGAAGAGCTCCTGTCACTCCATCTCCGCCACCGCCACCGCCACCGCCACCGCCGCCACAGAAAACAGAGACCCAAATCCCAAGGCCTTCAATTCAAGAACCCCATAACCCAAGAACAGATCAACCCCCGGGTTTCAAAACAGAGCAATCCTCTGCTTTCAAGGTTTACTGCCCCACACCAAGTGTGCGTTTACCGCCTCTGCCTCACAATCCCCATCTGAAAACCACGCCTGTTGTGTTGACAAAGAGTGTTGGGTGCGCTGAGAGAAAGCTGGATGCTCCTACCACCATCAATTTCTCACCCTCACCTTCGATTTCCGCTGCCAATTCATATATGTCTTCTTTAACCACTGGGGATGCTGAGGGTTCTGTGCAGCATTCAATGTCTTCTGGGTTTCAGTTCACAAACATGTCACAGTCGTCCTCGGGCAAGCCTCCTCTTTCCTCTTCTTCGTTGAAGAGGAAGTGCAATTCCATGGACGATGTTGCAGCTCTCAGGTGCGGCTCATCTTCTGGGCGCTGCCACTGTTCCAAGAAAAGGAAATCAAAAGTGAAAAGAGTGGTCAGAGTCCCTGCAATTAGTATGAAAATGGCTGATATTCCACCGGATGATTATTCATGGAGAAAGTACGGTCAAAAACCCATCAAGGGTTCCCCTCATCCAAGAGGATATTACAAGTGCAGTAGCCAGAGAGGCTGCCTTGCACGCAAGCACGTGGAGCGGGCTCTAGACGATCCAACCATGCTGATTGTGACCTACGAAGGTGATCACAATCACTCCCACACTGGCACGGATCCAACGCCTGATCTCGTCCTCGAATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

368

Amino Acids

40.02

Weight (kDa)

9.42

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	997
AclWI	GGATC	3 cut(s)	1004, 1064, 1077
AcoI	YGGCCR	2 cut(s)	210, 262
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	195
AcvI	CACGTG	1 cut(s)	991
AdeI	CACNNNGTG	1 cut(s)	458
AfaI	GTAC	2 cut(s)	191, 905
AfiI	CCNNNNNNNGG	2 cut(s)	813, 923
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	7 cut(s)	92, 366, 371, 412, 436, 657, 733
AluBI	AGCT	7 cut(s)	13, 83, 114, 197, 284, 547, 767
AluI	AGCT	7 cut(s)	13, 83, 114, 197, 284, 547, 767
Alw21I	GWGCWC	2 cut(s)	15, 286
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	3 cut(s)	1004, 1064, 1077
Ama87I	CYCGRG	2 cut(s)	403, 700
AoxI	GGCC	4 cut(s)	75, 210, 262, 359
ApeKI	GCWGC	6 cut(s)	41, 596, 649, 764, 795, 972
ApoI	RAATTY	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	221
AspLEI	GCGC	3 cut(s)	46, 536, 795
AsuC2I	CCSGG	2 cut(s)	404, 405
AsuHPI	GGTGA	3 cut(s)	567, 573, 1052
AvaI	CYCGRG	2 cut(s)	403, 700
BamHI	GGATCC	1 cut(s)	1069
BanII	GRGCYC	3 cut(s)	15, 286, 1003
BbrPI	CACGTG	1 cut(s)	991
BbsI	GAAGAC	2 cut(s)	606, 654
Bbv12I	GWGCWC	2 cut(s)	15, 286
BbvCI	CCTCAGC	2 cut(s)	79, 636
BbvI	GCAGC	6 cut(s)	53, 583, 661, 776, 782, 959
BccI	CCATC	5 cut(s)	13, 304, 498, 572, 926
BceAI	ACGGC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	2 cut(s)	404, 405
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	1 cut(s)	1004
BfmI	CTRYAG	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	969
Bme1390I	CCNGG	2 cut(s)	404, 405
BmeT110I	CYCGRG	2 cut(s)	403, 700
BmiI	GGNNCC	2 cut(s)	928, 1071
BmrFI	CCNGG	2 cut(s)	404, 405
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	541, 622
BmuI	ACTGGG	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	606, 654
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
Bpu10I	CCTNAGC	2 cut(s)	79, 636
BpuMI	CCSGG	2 cut(s)	404, 405
BsaAI	YACGTR	1 cut(s)	991
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	356, 402, 403, 699, 750
BsaWI	WCCGGW	1 cut(s)	880
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 1037, 1067
Bsc4I	CCNNNNNNNGG	2 cut(s)	813, 923
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	249, 631, 1066
Bse8I	GATNNNNATC	1 cut(s)	1047
BseDI	CCNNGG	5 cut(s)	356, 402, 403, 699, 750
BseGI	GGATG	4 cut(s)	556, 637, 889, 934
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	2 cut(s)	813, 923
BseMII	CTCAG	4 cut(s)	93, 528, 627, 784
BseNI	ACTGG	3 cut(s)	249, 631, 1066
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	6 cut(s)	53, 583, 661, 776, 782, 959
BsgI	GTGCAG	2 cut(s)	668, 976
BshFI	GGCC	4 cut(s)	77, 212, 264, 361
BsiHKAI	GWGCWC	2 cut(s)	15, 286
BsiHKCI	CYCGRG	2 cut(s)	403, 700
BsiSI	CCGG	3 cut(s)	261, 404, 881
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	2 cut(s)	813, 923
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	2 cut(s)	64, 652
BsnI	GGCC	4 cut(s)	77, 212, 264, 361
Bso31I	GGTCTC	1 cut(s)	338
BsoBI	CYCGRG	2 cut(s)	403, 700
Bsp1286I	GDGCHC	3 cut(s)	15, 286, 1003
Bsp143I	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
Bsp19I	CCATGG	1 cut(s)	750
BspANI	GGCC	4 cut(s)	77, 212, 264, 361
BspCNI	CTCAG	4 cut(s)	92, 529, 628, 783
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	928, 1071
BspPI	GGATC	3 cut(s)	1004, 1064, 1077
BspQI	GCTCTTC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	997
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	249, 631, 1066
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	356, 402, 403, 699, 750
BssMI	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
BssT1I	CCWWGG	2 cut(s)	356, 750
Bst4CI	ACNGT	4 cut(s)	35, 693, 803, 908
Bst6I	CTCTTC	5 cut(s)	48, 154, 274, 727, 728
BstBAI	YACGTR	1 cut(s)	991
BstC8I	GCNNGC	4 cut(s)	707, 982, 986, 999
BstDEI	CTNAG	4 cut(s)	79, 537, 636, 770
BstDSI	CCRYGG	1 cut(s)	750
BstF5I	GGATG	4 cut(s)	556, 637, 889, 934
BstH2I	RGCGCY	1 cut(s)	796
BstHHI	GCGC	3 cut(s)	46, 536, 795
BstKTI	GATC	5 cut(s)	397, 1012, 1045, 1072, 1084
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 209, 328, 469, 969, 981, 994
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	2 cut(s)	402, 403
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	6 cut(s)	53, 583, 661, 776, 782, 959
BstV2I	GAAGAC	2 cut(s)	606, 654
BstX2I	RGATCY	1 cut(s)	1069
BstYI	RGATCY	1 cut(s)	1069
BsuRI	GGCC	4 cut(s)	77, 212, 264, 361
BtgI	CCRYGG	1 cut(s)	750
BtsCI	GGATG	4 cut(s)	556, 637, 889, 934
BtsIMutI	CAGTG	3 cut(s)	624, 799, 1059
Cac8I	GCNNGC	4 cut(s)	707, 982, 986, 999
CciI	TCATGA	1 cut(s)	15
CfoI	GCGC	3 cut(s)	46, 536, 795
Cfr10I	RCCGGY	1 cut(s)	260
Cfr9I	CCCGGG	1 cut(s)	403
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	190, 904
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	6 cut(s)	16, 208, 685, 751, 894, 1018
CviQI	GTAC	2 cut(s)	190, 904
DdeI	CTNAG	4 cut(s)	79, 537, 636, 770
DpnI	GATC	5 cut(s)	396, 1011, 1044, 1071, 1083
DpnII	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	2 cut(s)	210, 262
Eam1104I	CTCTTC	5 cut(s)	48, 154, 274, 727, 728
EarI	CTCTTC	5 cut(s)	48, 154, 274, 727, 728
EciI	GGCGGA	1 cut(s)	291
Ecl136II	GAGCTC	2 cut(s)	13, 284
Eco130I	CCWWGG	2 cut(s)	356, 750
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	3 cut(s)	15, 286, 1003
Eco31I	GGTCTC	1 cut(s)	338
Eco53kI	GAGCTC	2 cut(s)	13, 284
Eco57I	CTGAAG	1 cut(s)	195
Eco72I	CACGTG	1 cut(s)	991
Eco88I	CYCGRG	2 cut(s)	403, 700
EcoICRI	GAGCTC	2 cut(s)	13, 284
EcoRI	GAATTC	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	356, 750
EcoT38I	GRGCYC	3 cut(s)	15, 286, 1003
ErhI	CCWWGG	2 cut(s)	356, 750
FaeI	CATG	6 cut(s)	19, 211, 688, 754, 897, 1021
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	6 cut(s)	15, 207, 684, 750, 893, 1017
FauI	CCCGC	1 cut(s)	990
FbaI	TGATCA	1 cut(s)	1042
FokI	GGATG	4 cut(s)	563, 644, 896, 921
FriOI	GRGCYC	3 cut(s)	15, 286, 1003
FspBI	CTAG	1 cut(s)	1004
GlaI	GCGC	3 cut(s)	45, 535, 794
HaeII	RGCGCY	1 cut(s)	796
HaeIII	GGCC	4 cut(s)	77, 212, 264, 361
HapII	CCGG	3 cut(s)	261, 404, 881
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	3 cut(s)	46, 536, 795
Hin1II	CATG	6 cut(s)	19, 211, 688, 754, 897, 1021
Hin6I	GCGC	3 cut(s)	44, 534, 793
HinP1I	GCGC	3 cut(s)	44, 534, 793
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	146, 843, 1094
HpaII	CCGG	3 cut(s)	261, 404, 881
HphI	GGTGA	3 cut(s)	567, 573, 1052
Hpy166II	GTNNAC	5 cut(s)	217, 442, 467, 516, 678
Hpy188I	TCNGA	3 cut(s)	278, 495, 842
Hpy188III	TCNNGA	5 cut(s)	16, 100, 226, 371, 1004
Hpy8I	GTNNAC	5 cut(s)	217, 442, 467, 516, 678
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	5 cut(s)	61, 223, 372, 594, 1031
HpyCH4III	ACNGT	4 cut(s)	35, 693, 803, 908
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	8 cut(s)	41, 203, 649, 744, 764, 851, 957, 980
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 209, 328, 469, 969, 981, 994
HpyF3I	CTNAG	4 cut(s)	79, 537, 636, 770
HpySE526I	ACGT	1 cut(s)	990
Hsp92II	CATG	6 cut(s)	19, 211, 688, 754, 897, 1021
HspAI	GCGC	3 cut(s)	44, 534, 793
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	4 cut(s)	10, 289, 559, 994
Lsp1109I	GCAGC	6 cut(s)	53, 583, 661, 776, 782, 959
LweI	GCATC	2 cut(s)	541, 622
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	3 cut(s)	289, 687, 1027
MalI	GATC	5 cut(s)	396, 1011, 1044, 1071, 1083
MbiI	CCGCTC	1 cut(s)	997
MboI	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
MflI	RGATCY	1 cut(s)	1069
MhlI	GDGCHC	3 cut(s)	15, 286, 1003
MluCI	AATT	7 cut(s)	87, 137, 366, 568, 601, 745, 852
MlyI	GAGTC	2 cut(s)	140, 852
MmeI	TCCRAC	2 cut(s)	1037, 1097
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	620, 1102
MslI	CAYNNNNRTG	2 cut(s)	212, 683
MspA1I	CMGCKG	2 cut(s)	83, 596
MspI	CCGG	3 cut(s)	261, 404, 881
MspR9I	CCNGG	2 cut(s)	404, 405
Mva1269I	GAATGC	2 cut(s)	64, 652
MwoI	GCNNNNNNNGC	7 cut(s)	80, 209, 328, 469, 969, 981, 994
NciI	CCSGG	2 cut(s)	404, 405
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
NlaIII	CATG	6 cut(s)	19, 211, 688, 754, 897, 1021
NlaIV	GGNNCC	2 cut(s)	928, 1071
NmuCI	GTSAC	3 cut(s)	289, 687, 1027
NspI	RCATGY	1 cut(s)	688
PagI	TCATGA	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	361
PciI	ACATGT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	274
PctI	GAATGC	2 cut(s)	64, 652
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	1094
PleI	GAGTC	2 cut(s)	140, 851
PmaCI	CACGTG	1 cut(s)	991
PmlI	CACGTG	1 cut(s)	991
PpsI	GAGTC	2 cut(s)	140, 851
Ppu21I	YACGTR	1 cut(s)	991
PscI	ACATGT	1 cut(s)	684
Psp124BI	GAGCTC	2 cut(s)	15, 286
PspCI	CACGTG	1 cut(s)	991
PspN4I	GGNNCC	2 cut(s)	928, 1071
PsuI	RGATCY	1 cut(s)	1069
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	191, 905
RsaNI	GTAC	2 cut(s)	190, 904
RseI	CAYNNNNRTG	2 cut(s)	212, 683
SacI	GAGCTC	2 cut(s)	15, 286
SapI	GCTCTTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	620, 1102
Sau3AI	GATC	5 cut(s)	394, 1009, 1042, 1069, 1081
SchI	GAGTC	2 cut(s)	140, 852
ScrFI	CCNGG	2 cut(s)	404, 405
SduI	GDGCHC	3 cut(s)	15, 286, 1003
SfaNI	GCATC	2 cut(s)	541, 622
SfcI	CTRYAG	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	212, 683
Sse9I	AATT	7 cut(s)	87, 137, 366, 568, 601, 745, 852
SseBI	AGGCCT	1 cut(s)	361
SspMI	CTAG	1 cut(s)	1004
SstI	GAGCTC	2 cut(s)	15, 286
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	402, 403
StyI	CCWWGG	2 cut(s)	356, 750
TaaI	ACNGT	4 cut(s)	35, 693, 803, 908
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	3 cut(s)	99, 587, 1092
TasI	AATT	7 cut(s)	87, 137, 366, 568, 601, 745, 852
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	4 cut(s)	77, 182, 331, 780
TfiI	GAWTC	1 cut(s)	1094
Tru1I	TTAA	2 cut(s)	620, 1102
Tru9I	TTAA	2 cut(s)	620, 1102
TscAI	CASTG	3 cut(s)	631, 806, 1066
TseFI	GTSAC	3 cut(s)	289, 687, 1027
TseI	GCWGC	6 cut(s)	41, 596, 649, 764, 795, 972
Tsp45I	GTSAC	3 cut(s)	289, 687, 1027
TspDTI	ATGAA	5 cut(s)	97, 228, 594, 875, 882
TspGWI	ACGGA	1 cut(s)	1082
TspMI	CCCGGG	1 cut(s)	403
TspRI	CASTG	3 cut(s)	631, 806, 1066
XapI	RAATTY	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	1003
XceI	RCATGY	1 cut(s)	688
XmaI	CCCGGG	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.