Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

65262839 .. 65264520

Gene Structure 1682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGCTTTGCGGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCGTAAGCTTGATGTCGTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATGGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTCATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATTGCCACTAGTTTTGACCAAAGAAACAGAGCGGTCTTCATTTCAGTTTCAAGAGGCTCTAAATATGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCAATTTCACGGCTTCGCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGACGGCGAGACTACTACTCTGCAACACTCGGTGTCGTCCGGTTTTCAATTGACCAACATGTCAGTGTCTTCTGCTGGTAAGCCTCCACTTCCTTCTTCGTCGTTAAAGAGGAAGTGTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAGGAAATCAAGAGTTAAGAGAGTGACGAGAATCCCTGCTATTAGTACGAAAATGGCTGATATCCCAGCTGATGAGTATTCATGGAGAAAGTACGGCCAAAAACCAATCAAGGGTTCCCCTCATCCAAGAGGGTACTACAAGTGCAGTAGCCAGAGAGGGTGCCCTGCACGAAAACACGTAGAGCGAGCTGTAGATGATCCGAGCATGCTGATAGTGACGTACGAGGGCGATCACAATCACTCCCAAGCTGTCACGGAGGCCATGGCAGCCATCGTCCTCGAATCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

322

Amino Acids

35.0

Weight (kDa)

9.57

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	200 - 246	1.2e-15	Plant zinc cluster domain
WRKY	PF03106	250 - 306	1.4e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	837
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	8 cut(s)	41, 173, 182, 310, 413, 461, 626, 629
AclWI	GGATC	3 cut(s)	82, 95, 869
AcoI	YGGCCR	2 cut(s)	42, 772
AcsI	RAATTY	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	5 cut(s)	433, 724, 770, 812, 899
AfiI	CCNNNNNNNGG	3 cut(s)	84, 678, 788
AflIII	ACRYGT	2 cut(s)	549, 853
AgeI	ACCGGT	2 cut(s)	230, 397
AgsI	TTSAA	6 cut(s)	135, 329, 379, 442, 539, 657
AhlI	ACTAGT	3 cut(s)	286, 428, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	7 cut(s)	13, 36, 114, 167, 746, 866, 926
AluI	AGCT	7 cut(s)	13, 36, 114, 167, 746, 866, 926
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	3 cut(s)	82, 95, 869
AoxI	GGCC	3 cut(s)	42, 772, 936
ApeKI	GCWGC	3 cut(s)	74, 149, 944
ApoI	RAATTY	1 cut(s)	475
AsiGI	ACCGGT	2 cut(s)	230, 397
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	2 cut(s)	247, 473
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	842
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	117, 306, 353, 552
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	86, 136, 956
BccI	CCATC	2 cut(s)	13, 956
BceAI	ACGGC	3 cut(s)	465, 511, 787
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	3 cut(s)	286, 428, 434
BfaI	CTAG	3 cut(s)	287, 429, 435
BfmI	CTRYAG	1 cut(s)	867
BisI	GCNGC	6 cut(s)	42, 75, 150, 627, 630, 945
BlsI	GCNGC	6 cut(s)	43, 76, 151, 628, 631, 946
BmcAI	AGTACT	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	89, 793, 839
BmsI	GCATC	2 cut(s)	613, 650
BpiI	GAAGAC	4 cut(s)	117, 306, 353, 552
Bpu14I	TTCGAA	2 cut(s)	247, 473
BsaAI	YACGTR	1 cut(s)	856
BsaBI	GATNNNNATC	1 cut(s)	912
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	78, 153, 939
BsaWI	WCCGGW	3 cut(s)	230, 397, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	902, 932
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 678, 788
Bse118I	RCCGGY	3 cut(s)	230, 397, 457
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	912
BseDI	CCNNGG	3 cut(s)	78, 153, 939
BseGI	GGATG	2 cut(s)	625, 799
BseJI	GATNNNNATC	1 cut(s)	912
BseLI	CCNNNNNNNGG	3 cut(s)	84, 678, 788
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	270
BseSI	GKGCMC	1 cut(s)	842
BseXI	GCAGC	3 cut(s)	86, 136, 956
BseYI	CCCAGC	2 cut(s)	83, 742
BsgI	GTGCAG	2 cut(s)	828, 841
BshFI	GGCC	3 cut(s)	44, 774, 938
BshNI	GGYRCC	1 cut(s)	837
BshTI	ACCGGT	2 cut(s)	230, 397
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	231, 398, 458, 531
BsiWI	CGTACG	1 cut(s)	897
BslFI	GGGAC	2 cut(s)	375, 506
BslI	CCNNNNNNNGG	3 cut(s)	84, 678, 788
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	375, 506
BsnI	GGCC	3 cut(s)	44, 774, 938
Bsp119I	TTCGAA	2 cut(s)	247, 473
Bsp1286I	GDGCHC	2 cut(s)	15, 842
Bsp143I	GATC	3 cut(s)	87, 874, 907
Bsp19I	CCATGG	2 cut(s)	153, 939
BspACI	CCGC	8 cut(s)	41, 173, 182, 310, 413, 461, 626, 629
BspANI	GGCC	3 cut(s)	44, 774, 938
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	89, 793, 839
BspPI	GGATC	3 cut(s)	82, 95, 869
BspT104I	TTCGAA	2 cut(s)	247, 473
BspT107I	GGYRCC	1 cut(s)	837
BsrBI	CCGCTC	1 cut(s)	310
BsrFI	RCCGGY	3 cut(s)	230, 397, 457
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	3 cut(s)	230, 397, 457
BssECI	CCNNGG	3 cut(s)	78, 153, 939
BssMI	GATC	3 cut(s)	87, 874, 907
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	2 cut(s)	153, 939
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	3 cut(s)	48, 244, 658
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	856
BstBI	TTCGAA	2 cut(s)	247, 473
BstC8I	GCNNGC	3 cut(s)	459, 864, 884
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	2 cut(s)	153, 939
BstF5I	GGATG	2 cut(s)	625, 799
BstKTI	GATC	3 cut(s)	90, 877, 910
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	87, 874, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 944
BstNSI	RCATGY	2 cut(s)	553, 886
BstSFI	CTRYAG	1 cut(s)	867
BstSLI	GKGCMC	1 cut(s)	842
BstV1I	GCAGC	3 cut(s)	86, 136, 956
BstV2I	GAAGAC	4 cut(s)	117, 306, 353, 552
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	44, 774, 938
BtgI	CCRYGG	2 cut(s)	153, 939
BtsCI	GGATG	2 cut(s)	625, 799
BtsIMutI	CAGTG	2 cut(s)	561, 664
Cac8I	GCNNGC	3 cut(s)	459, 864, 884
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	230, 397, 457
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	5 cut(s)	432, 723, 769, 811, 898
CspAI	ACCGGT	2 cut(s)	230, 397
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	7 cut(s)	16, 154, 178, 550, 759, 883, 940
CviQI	GTAC	5 cut(s)	432, 723, 769, 811, 898
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	3 cut(s)	89, 876, 909
DpnII	GATC	3 cut(s)	87, 874, 907
DraIII	CACNNNGTG	1 cut(s)	523
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	2 cut(s)	42, 772
Eam1104I	CTCTTC	3 cut(s)	48, 244, 658
EarI	CTCTTC	3 cut(s)	48, 244, 658
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	2 cut(s)	153, 939
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	153, 939
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	2 cut(s)	153, 939
FaeI	CATG	7 cut(s)	19, 157, 181, 553, 762, 886, 943
FaiI	YATR	9 cut(s)	17, 155, 179, 344, 485, 551, 760, 884, 941
FaqI	GGGAC	2 cut(s)	375, 506
FatI	CATG	7 cut(s)	15, 153, 177, 549, 758, 882, 939
Fnu4HI	GCNGC	6 cut(s)	42, 75, 150, 627, 630, 945
FokI	GGATG	2 cut(s)	632, 786
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	42, 75, 150, 627, 630, 945
FspBI	CTAG	3 cut(s)	287, 429, 435
GluI	GCNGC	6 cut(s)	42, 75, 150, 627, 630, 945
GsaI	CCCAGC	2 cut(s)	87, 746
HaeIII	GGCC	3 cut(s)	44, 774, 938
HapII	CCGG	4 cut(s)	231, 398, 458, 531
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	7 cut(s)	19, 157, 181, 553, 762, 886, 943
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	708, 959
HpaII	CCGG	4 cut(s)	231, 398, 458, 531
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	31, 275, 410
Hpy188I	TCNGA	2 cut(s)	197, 879
Hpy188III	TCNNGA	5 cut(s)	16, 91, 329, 657, 687
Hpy8I	GTNNAC	3 cut(s)	31, 275, 410
Hpy99I	CGWCG	2 cut(s)	595, 967
HpyAV	CCTTC	1 cut(s)	594
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	3 cut(s)	63, 855, 896
HpyCH4V	TGCA	3 cut(s)	514, 822, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 944
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	3 cut(s)	63, 855, 896
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	7 cut(s)	19, 157, 181, 553, 762, 886, 943
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	87, 874, 907
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	86, 136, 956
LweI	GCATC	2 cut(s)	613, 650
MaeI	CTAG	3 cut(s)	287, 429, 435
MaeII	ACGT	3 cut(s)	63, 855, 896
MaeIII	GTNAC	5 cut(s)	233, 259, 700, 892, 928
MalI	GATC	3 cut(s)	89, 876, 909
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	3 cut(s)	87, 874, 907
MfeI	CAATTG	2 cut(s)	278, 539
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	15, 842
MluCI	AATT	4 cut(s)	278, 442, 475, 539
MmeI	TCCRAC	1 cut(s)	195
MreI	CGCCGGCG	1 cut(s)	457
MroNI	GCCGGC	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	596, 693
MslI	CAYNNNNRTG	2 cut(s)	182, 554
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	4 cut(s)	231, 398, 458, 531
MunI	CAATTG	2 cut(s)	278, 539
MwoI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 944
NaeI	GCCGGC	1 cut(s)	459
NcoI	CCATGG	2 cut(s)	153, 939
NdeII	GATC	3 cut(s)	87, 874, 907
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	7 cut(s)	19, 157, 181, 553, 762, 886, 943
NlaIV	GGNNCC	3 cut(s)	89, 793, 839
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	5 cut(s)	233, 259, 700, 892, 928
NspI	RCATGY	2 cut(s)	553, 886
NspV	TTCGAA	2 cut(s)	247, 473
PaeI	GCATGC	1 cut(s)	886
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	708, 959
Pfl23II	CGTACG	1 cut(s)	897
PinAI	ACCGGT	2 cut(s)	230, 397
PkrI	GCNGC	6 cut(s)	43, 76, 151, 628, 631, 946
Ppu21I	YACGTR	1 cut(s)	856
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	2 cut(s)	83, 742
PspLI	CGTACG	1 cut(s)	897
PspN4I	GGNNCC	3 cut(s)	89, 793, 839
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	5 cut(s)	433, 724, 770, 812, 899
RsaNI	GTAC	5 cut(s)	432, 723, 769, 811, 898
RseI	CAYNNNNRTG	2 cut(s)	182, 554
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	596, 693
SatI	GCNGC	6 cut(s)	42, 75, 150, 627, 630, 945
Sau3AI	GATC	3 cut(s)	87, 874, 907
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	433
SduI	GDGCHC	2 cut(s)	15, 842
SfaNI	GCATC	2 cut(s)	613, 650
SfcI	CTRYAG	1 cut(s)	867
SfuI	TTCGAA	2 cut(s)	247, 473
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	182, 554
SpeI	ACTAGT	3 cut(s)	286, 428, 434
SphI	GCATGC	1 cut(s)	886
Sse9I	AATT	4 cut(s)	278, 442, 475, 539
SsiI	CCGC	8 cut(s)	41, 173, 182, 310, 413, 461, 626, 629
SspMI	CTAG	3 cut(s)	287, 429, 435
SstI	GAGCTC	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	153, 939
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	3 cut(s)	66, 858, 899
TaqI	TCGA	3 cut(s)	247, 473, 957
TasI	AATT	4 cut(s)	278, 442, 475, 539
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	3 cut(s)	44, 629, 632
TfiI	GAWTC	2 cut(s)	708, 959
Tru1I	TTAA	2 cut(s)	596, 693
Tru9I	TTAA	2 cut(s)	596, 693
TscAI	CASTG	2 cut(s)	561, 671
TseFI	GTSAC	5 cut(s)	233, 259, 700, 892, 928
TseI	GCWGC	3 cut(s)	74, 149, 944
Tsp45I	GTSAC	5 cut(s)	233, 259, 700, 892, 928
TspDTI	ATGAA	4 cut(s)	198, 306, 359, 747
TspGWI	ACGGA	1 cut(s)	947
TspRI	CASTG	2 cut(s)	561, 671
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	2 cut(s)	553, 886
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	287, 429, 435
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.