Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

69165156 .. 69166478

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG487300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGCTTTGCAGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCGTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATAGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTCATTTCATTGTTGGATAGAGGAAGAACTGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAACAGAGCAGCAGTCTTCATTTCAGTGTCAAGAGGCTCTAAATATGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCAATTTCTCGGCTTCGCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGACGGCGAGATTACTACTCTGCAACACTCGATGTCGTCCGGGTTTCAATTGACGCACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTCTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAAGAAATCAAGAGTTAAGAGAGTGACGAGAATCCCTGCTATTAGTACGAAAATGGCTGATATCCCAGCTGATGAGTATTCATGGAGAAAGTACGGCCAAAAACCAATCAAGGGTTCCCCTCATCCAAGAGGGTACTACAAGTGCAGTAGCCAGAGAGGGTGCCCTGCACGAAAACACGTAGAGCGAGCTGTAGATGATCCGAGCATGCTGATAGTGACGTACGAAGGCGATCACAATCACTCCCAAGCTGTCACGGAGGCCATGGCAGCCATTGTCCTCGAATCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

323

Amino Acids

35.04

Weight (kDa)

9.5

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	202 - 247	5.9e-13	Plant zinc cluster domain
WRKY	PF03106	251 - 307	1.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	553
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	840
AciI	CCGC	6 cut(s)	173, 182, 416, 464, 629, 632
AclWI	GGATC	3 cut(s)	82, 95, 872
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	5 cut(s)	436, 727, 773, 815, 902
AfiI	CCNNNNNNNGG	2 cut(s)	84, 791
AflIII	ACRYGT	2 cut(s)	552, 856
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	5 cut(s)	135, 382, 445, 542, 660
AhlI	ACTAGT	3 cut(s)	286, 431, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	7 cut(s)	13, 36, 114, 167, 749, 869, 929
AluI	AGCT	7 cut(s)	13, 36, 114, 167, 749, 869, 929
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	615
AlwI	GGATC	3 cut(s)	82, 95, 872
AoxI	GGCC	2 cut(s)	775, 939
ApeKI	GCWGC	5 cut(s)	41, 74, 149, 310, 947
ApoI	RAATTY	1 cut(s)	478
AsiGI	ACCGGT	1 cut(s)	400
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	2 cut(s)	247, 476
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	845
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	840
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	117, 309, 356, 555
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	5 cut(s)	53, 86, 136, 322, 959
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	514, 790
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	615
BcuI	ACTAGT	3 cut(s)	286, 431, 437
BfaI	CTAG	3 cut(s)	287, 432, 438
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	7 cut(s)	42, 75, 150, 311, 630, 633, 948
BlsI	GCNGC	7 cut(s)	43, 76, 151, 312, 631, 634, 949
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	89, 796, 842
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	616, 653
BpiI	GAAGAC	4 cut(s)	117, 309, 356, 555
BplI	GAGNNNNNCTC	2 cut(s)	595, 627
Bpu14I	TTCGAA	2 cut(s)	247, 476
BpuMI	CCSGG	1 cut(s)	535
BsaAI	YACGTR	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	915
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	78, 942
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 791
Bse118I	RCCGGY	2 cut(s)	400, 460
Bse1I	ACTGG	2 cut(s)	235, 270
Bse8I	GATNNNNATC	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	78, 942
BseGI	GGATG	2 cut(s)	628, 802
BseJI	GATNNNNATC	1 cut(s)	915
BseLI	CCNNNNNNNGG	2 cut(s)	84, 791
BseMII	CTCAG	1 cut(s)	652
BseNI	ACTGG	2 cut(s)	235, 270
BseRI	GAGGAG	1 cut(s)	570
BseSI	GKGCMC	1 cut(s)	845
BseXI	GCAGC	5 cut(s)	53, 86, 136, 322, 959
BseYI	CCCAGC	2 cut(s)	83, 745
BsgI	GTGCAG	2 cut(s)	831, 844
BshFI	GGCC	2 cut(s)	777, 941
BshNI	GGYRCC	1 cut(s)	840
BshTI	ACCGGT	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	401, 461, 534
BsiWI	CGTACG	1 cut(s)	900
BslFI	GGGAC	2 cut(s)	378, 509
BslI	CCNNNNNNNGG	2 cut(s)	84, 791
BsmAI	GTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	378, 509
BsnI	GGCC	2 cut(s)	777, 941
Bsp119I	TTCGAA	2 cut(s)	247, 476
Bsp1286I	GDGCHC	2 cut(s)	15, 845
Bsp143I	GATC	3 cut(s)	87, 877, 910
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	6 cut(s)	173, 182, 416, 464, 629, 632
BspANI	GGCC	2 cut(s)	777, 941
BspCNI	CTCAG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	89, 796, 842
BspPI	GGATC	3 cut(s)	82, 95, 872
BspT104I	TTCGAA	2 cut(s)	247, 476
BspT107I	GGYRCC	1 cut(s)	840
BsrFI	RCCGGY	2 cut(s)	400, 460
BsrI	ACTGG	2 cut(s)	235, 270
BssAI	RCCGGY	2 cut(s)	400, 460
BssECI	CCNNGG	2 cut(s)	78, 942
BssMI	GATC	3 cut(s)	87, 877, 910
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	942
Bst4CI	ACNGT	1 cut(s)	671
Bst6I	CTCTTC	4 cut(s)	48, 244, 588, 661
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	859
BstBI	TTCGAA	2 cut(s)	247, 476
BstC8I	GCNNGC	3 cut(s)	462, 867, 887
BstDEI	CTNAG	1 cut(s)	638
BstDSI	CCRYGG	1 cut(s)	942
BstF5I	GGATG	2 cut(s)	628, 802
BstKTI	GATC	3 cut(s)	90, 880, 913
BstMAI	GTCTC	1 cut(s)	615
BstMBI	GATC	3 cut(s)	87, 877, 910
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 179, 415, 461, 947
BstNSI	RCATGY	2 cut(s)	556, 889
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	870
BstSLI	GKGCMC	1 cut(s)	845
BstV1I	GCAGC	5 cut(s)	53, 86, 136, 322, 959
BstV2I	GAAGAC	4 cut(s)	117, 309, 356, 555
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	777, 941
BtgI	CCRYGG	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	628, 802
BtsIMutI	CAGTG	3 cut(s)	332, 564, 667
Cac8I	GCNNGC	3 cut(s)	462, 867, 887
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	2 cut(s)	400, 460
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	5 cut(s)	435, 726, 772, 814, 901
CspAI	ACCGGT	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	6 cut(s)	16, 178, 553, 762, 886, 943
CviQI	GTAC	5 cut(s)	435, 726, 772, 814, 901
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	3 cut(s)	89, 879, 912
DpnII	GATC	3 cut(s)	87, 877, 910
DrdI	GACNNNNNNGTC	1 cut(s)	553
DseDI	GACNNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	4 cut(s)	48, 244, 588, 661
EarI	CTCTTC	4 cut(s)	48, 244, 588, 661
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	942
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	942
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	6 cut(s)	19, 181, 556, 765, 889, 946
FaqI	GGGAC	2 cut(s)	378, 509
FatI	CATG	6 cut(s)	15, 177, 552, 761, 885, 942
Fnu4HI	GCNGC	7 cut(s)	42, 75, 150, 311, 630, 633, 948
FokI	GGATG	2 cut(s)	635, 789
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	7 cut(s)	42, 75, 150, 311, 630, 633, 948
FspBI	CTAG	3 cut(s)	287, 432, 438
GluI	GCNGC	7 cut(s)	42, 75, 150, 311, 630, 633, 948
GsaI	CCCAGC	2 cut(s)	87, 749
HaeIII	GGCC	2 cut(s)	777, 941
HapII	CCGG	3 cut(s)	401, 461, 534
HgaI	GACGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	6 cut(s)	19, 181, 556, 765, 889, 946
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	711, 962
HpaII	CCGG	3 cut(s)	401, 461, 534
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	31, 275, 413
Hpy188I	TCNGA	2 cut(s)	197, 882
Hpy188III	TCNNGA	5 cut(s)	16, 91, 332, 660, 690
Hpy8I	GTNNAC	3 cut(s)	31, 275, 413
Hpy99I	CGWCG	2 cut(s)	598, 970
HpyAV	CCTTC	2 cut(s)	597, 899
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4IV	ACGT	3 cut(s)	63, 858, 899
HpyCH4V	TGCA	4 cut(s)	41, 517, 825, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 179, 415, 461, 947
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	3 cut(s)	63, 858, 899
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	6 cut(s)	19, 181, 556, 765, 889, 946
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	87, 877, 910
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	5 cut(s)	53, 86, 136, 322, 959
LweI	GCATC	2 cut(s)	616, 653
MaeI	CTAG	3 cut(s)	287, 432, 438
MaeII	ACGT	3 cut(s)	63, 858, 899
MaeIII	GTNAC	5 cut(s)	233, 259, 703, 895, 931
MalI	GATC	3 cut(s)	89, 879, 912
MboI	GATC	3 cut(s)	87, 877, 910
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	15, 845
MluCI	AATT	3 cut(s)	445, 478, 542
MmeI	TCCRAC	1 cut(s)	195
MreI	CGCCGGCG	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	599, 696
MslI	CAYNNNNRTG	3 cut(s)	182, 325, 557
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	3 cut(s)	401, 461, 534
MspR9I	CCNGG	1 cut(s)	535
MunI	CAATTG	1 cut(s)	542
MwoI	GCNNNNNNNGC	5 cut(s)	80, 179, 415, 461, 947
NaeI	GCCGGC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	535
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	3 cut(s)	87, 877, 910
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	6 cut(s)	19, 181, 556, 765, 889, 946
NlaIV	GGNNCC	3 cut(s)	89, 796, 842
NmeAIII	GCCGAG	2 cut(s)	59, 431
NmuCI	GTSAC	5 cut(s)	233, 259, 703, 895, 931
NspI	RCATGY	2 cut(s)	556, 889
NspV	TTCGAA	2 cut(s)	247, 476
PaeI	GCATGC	1 cut(s)	889
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	552
PdiI	GCCGGC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	711, 962
Pfl23II	CGTACG	1 cut(s)	900
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	7 cut(s)	43, 76, 151, 312, 631, 634, 949
Ppu21I	YACGTR	1 cut(s)	859
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	552
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	2 cut(s)	83, 745
PspLI	CGTACG	1 cut(s)	900
PspN4I	GGNNCC	3 cut(s)	89, 796, 842
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	5 cut(s)	436, 727, 773, 815, 902
RsaNI	GTAC	5 cut(s)	435, 726, 772, 814, 901
RseI	CAYNNNNRTG	3 cut(s)	182, 325, 557
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	599, 696
SatI	GCNGC	7 cut(s)	42, 75, 150, 311, 630, 633, 948
Sau3AI	GATC	3 cut(s)	87, 877, 910
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	15, 845
SfaNI	GCATC	2 cut(s)	616, 653
SfcI	CTRYAG	1 cut(s)	870
SfuI	TTCGAA	2 cut(s)	247, 476
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	182, 325, 557
SpeI	ACTAGT	3 cut(s)	286, 431, 437
SphI	GCATGC	1 cut(s)	889
Sse9I	AATT	3 cut(s)	445, 478, 542
SsiI	CCGC	6 cut(s)	173, 182, 416, 464, 629, 632
SspMI	CTAG	3 cut(s)	287, 432, 438
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	1 cut(s)	671
TaiI	ACGT	3 cut(s)	66, 861, 902
TaqI	TCGA	4 cut(s)	247, 476, 524, 960
TasI	AATT	3 cut(s)	445, 478, 542
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	2 cut(s)	632, 635
TfiI	GAWTC	2 cut(s)	711, 962
Tru1I	TTAA	2 cut(s)	599, 696
Tru9I	TTAA	2 cut(s)	599, 696
TscAI	CASTG	3 cut(s)	332, 564, 674
TseFI	GTSAC	5 cut(s)	233, 259, 703, 895, 931
TseI	GCWGC	5 cut(s)	41, 74, 149, 310, 947
Tsp45I	GTSAC	5 cut(s)	233, 259, 703, 895, 931
TspDTI	ATGAA	5 cut(s)	97, 198, 309, 362, 750
TspGWI	ACGGA	1 cut(s)	950
TspRI	CASTG	3 cut(s)	332, 564, 674
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	478
XceI	RCATGY	2 cut(s)	556, 889
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	287, 432, 438
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.