Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

65893256 .. 65896609

Gene Structure 3354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG492300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGCTTTGCAGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCGTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATAGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTCATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAACAGAGCAGCAGTCTTCATTTCAGTGTCAAGAGGAGGCTCTAAATATGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCAATTTCTCGGCTTCGCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGAAGGCGAGATTACTACTCTGCAACACTCGATGTCGTCCGGGTTTCAATTGACGCACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTCTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAGGTTTGTCGATCTTTTCGTCACCATCTCTGTATTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

241

Amino Acids

25.94

Weight (kDa)

9.13

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	556
AatII	GACGTC	1 cut(s)	66
AciI	CCGC	6 cut(s)	173, 182, 419, 467, 632, 635
AclWI	GGATC	2 cut(s)	82, 95
AcsI	RAATTY	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	84, 684
AflIII	ACRYGT	1 cut(s)	555
AgeI	ACCGGT	2 cut(s)	230, 403
AgsI	TTSAA	5 cut(s)	135, 385, 448, 545, 663
AhlI	ACTAGT	3 cut(s)	286, 434, 440
AluBI	AGCT	4 cut(s)	13, 36, 114, 167
AluI	AGCT	4 cut(s)	13, 36, 114, 167
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	82, 95
ApeKI	GCWGC	4 cut(s)	41, 74, 149, 310
ApoI	RAATTY	1 cut(s)	481
AsiGI	ACCGGT	2 cut(s)	230, 403
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	196, 697
AsuII	TTCGAA	2 cut(s)	247, 479
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	117, 309, 359, 558
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	53, 86, 136, 322
BccI	CCATC	2 cut(s)	13, 716
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	618
BcuI	ACTAGT	3 cut(s)	286, 434, 440
BfaI	CTAG	3 cut(s)	287, 435, 441
BisI	GCNGC	6 cut(s)	42, 75, 150, 311, 633, 636
BlsI	GCNGC	6 cut(s)	43, 76, 151, 312, 634, 637
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	2 cut(s)	619, 656
BpiI	GAAGAC	4 cut(s)	117, 309, 359, 558
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
Bpu14I	TTCGAA	2 cut(s)	247, 479
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	2 cut(s)	230, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 684
Bse118I	RCCGGY	3 cut(s)	230, 403, 463
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	84, 684
BseMII	CTCAG	1 cut(s)	655
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	350, 573
BseXI	GCAGC	4 cut(s)	53, 86, 136, 322
BseYI	CCCAGC	1 cut(s)	83
BshTI	ACCGGT	2 cut(s)	230, 403
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	231, 404, 464, 537
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	2 cut(s)	84, 684
BsmAI	GTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	381
Bsp119I	TTCGAA	2 cut(s)	247, 479
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	87, 694
BspACI	CCGC	6 cut(s)	173, 182, 419, 467, 632, 635
BspCNI	CTCAG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	82, 95
BspT104I	TTCGAA	2 cut(s)	247, 479
BsrFI	RCCGGY	3 cut(s)	230, 403, 463
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	3 cut(s)	230, 403, 463
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	87, 694
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	4 cut(s)	48, 244, 591, 664
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	2 cut(s)	247, 479
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	641
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	2 cut(s)	90, 697
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	2 cut(s)	87, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 179, 418, 464
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	536
BstV1I	GCAGC	4 cut(s)	53, 86, 136, 322
BstV2I	GAAGAC	4 cut(s)	117, 309, 359, 558
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	3 cut(s)	332, 567, 670
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	230, 403, 463
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	438
CspAI	ACCGGT	2 cut(s)	230, 403
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	16, 178, 556
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	2 cut(s)	89, 696
DpnII	GATC	2 cut(s)	87, 694
DrdI	GACNNNNNNGTC	1 cut(s)	556
DseDI	GACNNNNNNGTC	1 cut(s)	556
Eam1104I	CTCTTC	4 cut(s)	48, 244, 591, 664
EarI	CTCTTC	4 cut(s)	48, 244, 591, 664
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	19, 181, 559
FaiI	YATR	7 cut(s)	17, 110, 155, 179, 350, 491, 557
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	3 cut(s)	15, 177, 555
Fnu4HI	GCNGC	6 cut(s)	42, 75, 150, 311, 633, 636
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	42, 75, 150, 311, 633, 636
FspBI	CTAG	3 cut(s)	287, 435, 441
GluI	GCNGC	6 cut(s)	42, 75, 150, 311, 633, 636
GsaI	CCCAGC	1 cut(s)	87
HapII	CCGG	4 cut(s)	231, 404, 464, 537
HgaI	GACGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	19, 181, 559
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HpaII	CCGG	4 cut(s)	231, 404, 464, 537
HphI	GGTGA	2 cut(s)	196, 697
Hpy166II	GTNNAC	3 cut(s)	31, 275, 416
Hpy188I	TCNGA	1 cut(s)	197
Hpy188III	TCNNGA	5 cut(s)	16, 91, 332, 663, 723
Hpy8I	GTNNAC	3 cut(s)	31, 275, 416
Hpy99I	CGWCG	1 cut(s)	601
HpyAV	CCTTC	2 cut(s)	494, 600
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	41, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 179, 418, 464
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	19, 181, 559
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	87, 694
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	4 cut(s)	53, 86, 136, 322
LweI	GCATC	2 cut(s)	619, 656
MaeI	CTAG	3 cut(s)	287, 435, 441
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	233, 259, 703
MalI	GATC	2 cut(s)	89, 696
MboI	GATC	2 cut(s)	87, 694
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	448, 481, 545
MmeI	TCCRAC	1 cut(s)	195
MreI	CGCCGGCG	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	602
MslI	CAYNNNNRTG	3 cut(s)	182, 325, 560
MspI	CCGG	4 cut(s)	231, 404, 464, 537
MspR9I	CCNGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	545
MwoI	GCNNNNNNNGC	4 cut(s)	80, 179, 418, 464
NaeI	GCCGGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	87, 694
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	19, 181, 559
NlaIV	GGNNCC	1 cut(s)	89
NmeAIII	GCCGAG	2 cut(s)	59, 434
NmuCI	GTSAC	3 cut(s)	233, 259, 703
NspI	RCATGY	1 cut(s)	559
NspV	TTCGAA	2 cut(s)	247, 479
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	699
PdiI	GCCGGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	191
PinAI	ACCGGT	2 cut(s)	230, 403
PkrI	GCNGC	6 cut(s)	43, 76, 151, 312, 634, 637
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
RseI	CAYNNNNRTG	3 cut(s)	182, 325, 560
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	602
SatI	GCNGC	6 cut(s)	42, 75, 150, 311, 633, 636
Sau3AI	GATC	2 cut(s)	87, 694
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	619, 656
SfuI	TTCGAA	2 cut(s)	247, 479
SgrAI	CRCCGGYG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	182, 325, 560
SpeI	ACTAGT	3 cut(s)	286, 434, 440
Sse9I	AATT	3 cut(s)	448, 481, 545
SsiI	CCGC	6 cut(s)	173, 182, 419, 467, 632, 635
SspMI	CTAG	3 cut(s)	287, 435, 441
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	247, 479, 527, 693
TasI	AATT	3 cut(s)	448, 481, 545
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	2 cut(s)	635, 638
Tru1I	TTAA	1 cut(s)	602
Tru9I	TTAA	1 cut(s)	602
TscAI	CASTG	3 cut(s)	332, 567, 677
TseFI	GTSAC	3 cut(s)	233, 259, 703
TseI	GCWGC	4 cut(s)	41, 74, 149, 310
Tsp45I	GTSAC	3 cut(s)	233, 259, 703
TspDTI	ATGAA	4 cut(s)	97, 198, 309, 365
TspRI	CASTG	3 cut(s)	332, 567, 677
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	481
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	3 cut(s)	287, 435, 441
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.