Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Forward (+)

25309319 .. 25312790

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCCTAGCTATATGAACAGCTTTGCAGCTAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCCGCTGGGATACAGAGCGTCGAGAAATTCATAAGCTTAATGTCTTCTTCTTCAGCCTCTGAAAGTGCTTCTTTAGAGTACAAAGCAGTTGCGGACATGGCCGTCGATAAGTTCAGGAAGGTCATTTCTTTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTAAATACTACCACTACAGCTACTGTTTCTTCTAGTCTACCACAACAAGCACCACAAGTTTTAACCAGAGAAACAGGGCAGCCTTCATTTCGGTGTCAAGATGCTACAAATTTGAAGACAGAGCAATCCCAATCCTCATCTGCTTTCAAAGTTTATTGTCCCAAGCCGGTTCTGCGGTTACCGCCTCTGCCAAAGAGTGGTACTAGTTTCAGTTTCACGGCTTCGCCGGCGGTTTCGGGTTCGAATTCTTTTATGTCCGGCGACGGCGAGACTACTACTACCCTGCAACACTCGATGTCGTCCGGGTTTCAATTGACGAACATGTCAAACATGTCAGTGTCGTCTGCTGGTAAGCCTCCTCTTCCTTCTTCTTCGTTCAAGAGGAAGTGTAATTCTGTGGATGATTCGACGGCTATGAGATGTGGCTCGTCTTCTTCAAGATGCCACTGTTCCAAGAAAAGGAAATCAAGAGTGAAGAGAGTGACGAGAATCCCTGCTATCAGTACGAAAATGGCTGACATCCCAGCTGATGAGTATTCTTGGCGGAAGTACGGCCAAAAACCAATCAAGGGTTCCCCTCATCCAAGAGGGTATTACAAATGCAGCAGCCAAAGAGGGTGCCCAGCGCGAAAACACGTAGAGAGAGCTGTAGACGATCCGAGCATGCTGATCGTGACCTACGAAGGCGATCACAATCACTCCCAAGCTGTCACGGAGGCAATGGCAGCCATCGTCCTCGAATCGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

330

Amino Acids

35.64

Weight (kDa)

9.64

Isoelectric Point (pI)

56.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	207 - 253	8.3e-16	Plant zinc cluster domain
WRKY	PF03106	257 - 313	1.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	164, 562
AatII	GACGTC	1 cut(s)	51
AccB1I	GGYRCC	1 cut(s)	858
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccI	GTMKAC	2 cut(s)	277, 891
AccII	CGCG	1 cut(s)	868
AciI	CCGC	6 cut(s)	66, 155, 415, 422, 470, 784
AclWI	GGATC	1 cut(s)	890
AcoI	YGGCCR	2 cut(s)	162, 793
AcsI	RAATTY	3 cut(s)	89, 349, 484
AcuI	CTGAAG	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	4 cut(s)	143, 442, 745, 791
AfiI	CCNNNNNNNGG	4 cut(s)	69, 437, 699, 809
AflIII	ACRYGT	3 cut(s)	561, 570, 874
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	355, 388, 551, 619, 678
AhlI	ACTAGT	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	8 cut(s)	9, 21, 29, 99, 260, 767, 887, 947
AluI	AGCT	8 cut(s)	9, 21, 29, 99, 260, 767, 887, 947
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	890
AlwNI	CAGNNNCTG	2 cut(s)	122, 263
AoxI	GGCC	2 cut(s)	162, 793
ApeKI	GCWGC	6 cut(s)	26, 59, 319, 843, 846, 965
ApoI	RAATTY	3 cut(s)	89, 349, 484
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	544
AsuII	TTCGAA	2 cut(s)	229, 482
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	863
BanI	GGYRCC	1 cut(s)	858
BbsI	GAAGAC	3 cut(s)	99, 362, 663
BbvI	GCAGC	6 cut(s)	38, 71, 331, 855, 858, 977
BccI	CCATC	1 cut(s)	977
BceAI	ACGGC	5 cut(s)	149, 474, 520, 666, 808
BcgI	CGANNNNNNTGC	2 cut(s)	892, 926
BciVI	GTATCC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	503
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	4 cut(s)	6, 273, 444, 988
BfmI	CTRYAG	2 cut(s)	255, 888
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	6 cut(s)	27, 60, 320, 844, 847, 966
BlsI	GCNGC	6 cut(s)	28, 61, 321, 845, 848, 967
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	814, 860
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	2 cut(s)	331, 671
BpiI	GAAGAC	3 cut(s)	99, 362, 663
Bpu14I	TTCGAA	2 cut(s)	229, 482
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	877
BsaBI	GATNNNNATC	1 cut(s)	933
BsaHI	GRCGYC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	923, 953
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 437, 699, 809
Bse118I	RCCGGY	3 cut(s)	212, 406, 466
Bse3DI	GCAATG	1 cut(s)	966
Bse8I	GATNNNNATC	1 cut(s)	933
BseGI	GGATG	3 cut(s)	646, 759, 820
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	4 cut(s)	69, 437, 699, 809
BseMI	GCAATG	1 cut(s)	966
BseRI	GAGGAG	1 cut(s)	588
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	6 cut(s)	38, 71, 331, 855, 858, 977
BseYI	CCCAGC	3 cut(s)	68, 763, 862
Bsh1236I	CGCG	1 cut(s)	868
BshFI	GGCC	2 cut(s)	164, 795
BshNI	GGYRCC	1 cut(s)	858
BshTI	ACCGGT	1 cut(s)	212
BsiSI	CCGG	5 cut(s)	213, 407, 467, 498, 543
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	69, 437, 699, 809
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	164, 795
Bsp119I	TTCGAA	2 cut(s)	229, 482
Bsp1286I	GDGCHC	1 cut(s)	863
Bsp143I	GATC	3 cut(s)	895, 909, 928
BspACI	CCGC	6 cut(s)	66, 155, 415, 422, 470, 784
BspANI	GGCC	2 cut(s)	164, 795
BspFNI	CGCG	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	814, 860
BspPI	GGATC	1 cut(s)	890
BspT104I	TTCGAA	2 cut(s)	229, 482
BspT107I	GGYRCC	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	3 cut(s)	212, 406, 466
BssAI	RCCGGY	3 cut(s)	212, 406, 466
BssMI	GATC	3 cut(s)	895, 909, 928
BssNI	GRCGYC	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	265, 689
Bst6I	CTCTTC	4 cut(s)	33, 226, 606, 710
BstACI	GRCGYC	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	877
BstBI	TTCGAA	2 cut(s)	229, 482
BstC8I	GCNNGC	2 cut(s)	468, 905
BstEII	GGTNACC	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	646, 759, 820
BstFNI	CGCG	1 cut(s)	868
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	3 cut(s)	898, 912, 931
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	3 cut(s)	895, 909, 928
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 161, 412, 421, 467, 965
BstNSI	RCATGY	3 cut(s)	565, 574, 907
BstPI	GGTNACC	1 cut(s)	417
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	2 cut(s)	255, 888
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	1 cut(s)	868
BstV1I	GCAGC	6 cut(s)	38, 71, 331, 855, 858, 977
BstV2I	GAAGAC	3 cut(s)	99, 362, 663
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	2 cut(s)	164, 795
BtsCI	GGATG	3 cut(s)	646, 759, 820
BtsIMutI	CAGTG	2 cut(s)	582, 685
Cac8I	GCNNGC	2 cut(s)	468, 905
CaiI	CAGNNNCTG	2 cut(s)	122, 263
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	3 cut(s)	212, 406, 466
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	142, 441, 744, 790
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	4 cut(s)	160, 562, 571, 904
CviQI	GTAC	4 cut(s)	142, 441, 744, 790
DpnI	GATC	3 cut(s)	897, 911, 930
DpnII	GATC	3 cut(s)	895, 909, 928
DrdI	GACNNNNNNGTC	2 cut(s)	164, 562
DseDI	GACNNNNNNGTC	2 cut(s)	164, 562
EaeI	YGGCCR	2 cut(s)	162, 793
Eam1104I	CTCTTC	4 cut(s)	33, 226, 606, 710
EarI	CTCTTC	4 cut(s)	33, 226, 606, 710
EciI	GGCGGA	1 cut(s)	799
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	417
EcoRI	GAATTC	1 cut(s)	484
FaeI	CATG	4 cut(s)	163, 565, 574, 907
FaiI	YATR	9 cut(s)	12, 14, 95, 161, 494, 563, 572, 656, 905
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	4 cut(s)	159, 561, 570, 903
FblI	GTMKAC	2 cut(s)	277, 891
Fnu4HI	GCNGC	6 cut(s)	27, 60, 320, 844, 847, 966
FokI	GGATG	3 cut(s)	653, 746, 807
Fsp4HI	GCNGC	6 cut(s)	27, 60, 320, 844, 847, 966
FspBI	CTAG	4 cut(s)	6, 273, 444, 988
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	6 cut(s)	27, 60, 320, 844, 847, 966
GsaI	CCCAGC	3 cut(s)	72, 767, 866
HaeIII	GGCC	2 cut(s)	164, 795
HapII	CCGG	5 cut(s)	213, 407, 467, 498, 543
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	868
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	4 cut(s)	163, 565, 574, 907
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	3 cut(s)	644, 729, 980
HpaII	CCGG	5 cut(s)	213, 407, 467, 498, 543
Hpy166II	GTNNAC	2 cut(s)	278, 892
Hpy188I	TCNGA	2 cut(s)	124, 900
Hpy188III	TCNNGA	7 cut(s)	85, 178, 338, 619, 678, 708, 913
Hpy8I	GTNNAC	2 cut(s)	278, 892
Hpy99I	CGWCG	4 cut(s)	86, 170, 506, 652
HpyAV	CCTTC	4 cut(s)	175, 333, 615, 917
HpyCH4III	ACNGT	2 cut(s)	265, 689
HpyCH4IV	ACGT	2 cut(s)	48, 876
HpyCH4V	TGCA	3 cut(s)	26, 526, 843
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 161, 412, 421, 467, 965
HpySE526I	ACGT	2 cut(s)	48, 876
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	163, 565, 574, 907
HspAI	GCGC	1 cut(s)	866
KroI	GCCGGC	1 cut(s)	466
KroNI	GCCGGC	1 cut(s)	468
Kzo9I	GATC	3 cut(s)	895, 909, 928
Lsp1109I	GCAGC	6 cut(s)	38, 71, 331, 855, 858, 977
LweI	GCATC	2 cut(s)	331, 671
MaeI	CTAG	4 cut(s)	6, 273, 444, 988
MaeII	ACGT	2 cut(s)	48, 876
MaeIII	GTNAC	5 cut(s)	215, 417, 721, 913, 949
MalI	GATC	3 cut(s)	897, 911, 930
MboI	GATC	3 cut(s)	895, 909, 928
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	863
MluCI	AATT	5 cut(s)	89, 349, 484, 551, 631
MmeI	TCCRAC	1 cut(s)	177
MreI	CGCCGGCG	1 cut(s)	466
MroNI	GCCGGC	1 cut(s)	466
MseI	TTAA	2 cut(s)	101, 302
MslI	CAYNNNNRTG	2 cut(s)	331, 575
MspA1I	CMGCKG	2 cut(s)	68, 767
MspI	CCGG	5 cut(s)	213, 407, 467, 498, 543
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	868
MwoI	GCNNNNNNNGC	6 cut(s)	65, 161, 412, 421, 467, 965
NaeI	GCCGGC	1 cut(s)	468
NciI	CCSGG	1 cut(s)	544
NdeII	GATC	3 cut(s)	895, 909, 928
NgoMIV	GCCGGC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	163, 565, 574, 907
NlaIV	GGNNCC	2 cut(s)	814, 860
NmuCI	GTSAC	4 cut(s)	215, 721, 913, 949
NspI	RCATGY	3 cut(s)	565, 574, 907
NspV	TTCGAA	2 cut(s)	229, 482
PaeI	GCATGC	1 cut(s)	907
PciI	ACATGT	2 cut(s)	561, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PdiI	GCCGGC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	644, 729, 980
PflMI	CCANNNNNTGG	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	28, 61, 321, 845, 848, 967
Ppu21I	YACGTR	1 cut(s)	877
PpuMI	RGGWCCY	1 cut(s)	236
PscI	ACATGT	2 cut(s)	561, 570
Psp5II	RGGWCCY	1 cut(s)	236
PspEI	GGTNACC	1 cut(s)	417
PspFI	CCCAGC	3 cut(s)	68, 763, 862
PspN4I	GGNNCC	2 cut(s)	814, 860
PspPI	GGNCC	1 cut(s)	236
PspPPI	RGGWCCY	1 cut(s)	236
PstNI	CAGNNNCTG	2 cut(s)	122, 263
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	4 cut(s)	143, 442, 745, 791
RsaNI	GTAC	4 cut(s)	142, 441, 744, 790
RseI	CAYNNNNRTG	2 cut(s)	331, 575
SaqAI	TTAA	2 cut(s)	101, 302
SatI	GCNGC	6 cut(s)	27, 60, 320, 844, 847, 966
Sau3AI	GATC	3 cut(s)	895, 909, 928
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	863
SfaNI	GCATC	2 cut(s)	331, 671
SfcI	CTRYAG	2 cut(s)	255, 888
SfuI	TTCGAA	2 cut(s)	229, 482
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	331, 575
SpeI	ACTAGT	1 cut(s)	443
SphI	GCATGC	1 cut(s)	907
Sse9I	AATT	5 cut(s)	89, 349, 484, 551, 631
SsiI	CCGC	6 cut(s)	66, 155, 415, 422, 470, 784
SspMI	CTAG	4 cut(s)	6, 273, 444, 988
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	265, 689
TaiI	ACGT	2 cut(s)	51, 879
TaqI	TCGA	7 cut(s)	84, 168, 229, 482, 533, 647, 978
TasI	AATT	5 cut(s)	89, 349, 484, 551, 631
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	644, 729, 980
Tru1I	TTAA	2 cut(s)	101, 302
Tru9I	TTAA	2 cut(s)	101, 302
TscAI	CASTG	2 cut(s)	582, 692
TseFI	GTSAC	4 cut(s)	215, 721, 913, 949
TseI	GCWGC	6 cut(s)	26, 59, 319, 843, 846, 965
Tsp45I	GTSAC	4 cut(s)	215, 721, 913, 949
TspDTI	ATGAA	3 cut(s)	29, 82, 315
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	2 cut(s)	582, 692
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	3 cut(s)	89, 349, 484
XceI	RCATGY	3 cut(s)	565, 574, 907
XmiI	GTMKAC	2 cut(s)	277, 891
XspI	CTAG	4 cut(s)	6, 273, 444, 988
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.