Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Forward (+)

6195355 .. 6196845

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g07690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGCGTGGAACTAATGATGGGATTGGTTGACAGTTTTGCAGCGAGGATGGAGGAGAATGCGGTGAAGGAGGCGGCCTCCGCCGGAATCCAGAGCGTCGAGAAGTTCATTAGCCTGATTTCGGAACACCACCAATCAACGTCGTCGAACTCGGAAGCTGGTACGGAGTATAAAGCCGTGGCGGACATGGCCGTGACCAAGTTCAGAAAGGTCATTTCGTTGTTGGACAAGGGATGTACCGGCCACGCCCGGTTTCGGAAAGCTCCGGTGCCTCTATCTCCGCCTCCCCTGCAGCTGGTGCCTCCGAAGACGATAACCCAAATTCTGAGACCTTCAATTTCAGAACCCCATGATCAAACAACAGAGCAACCCTCTGTTTTCAGAACAGAACAATCTTCTGCCTTTAAGGTTTATTGTCCGAAGCCGGTGGTTCGCCTGCCGCCGCTGCCGCAAAATCCCCATTTGAAAACCAGTCCGGTTGTGCTGACAAAAGATATTGGGTGCTCTGAGAGAAAGATGGATTCTGCTGCTGCCGCCACCATCAACTTCTCGCCTTTGGCGCCCATTTCTGCCGCGAATTCGTTCATTTCGTCTTTAACTACTGGGGATCCCGCTGAGCAATCGATCTCTTCTGGGTTTCAATTTACAAATATGTCACAGTCGTCTTCGGGTAGGCCGCCTCTGTCTTCGTCGTCGTTGAAGAGGAAGTGCAGCTCCGTCGACAATGTTTCTCGTCTCCGGTGCGGATCTACTACCGGGCGCTGCCACTGCTCTAAGAAAAGGGTTCCTGCAATTAGCATGAAACTGGCTGATATTCCACCTGATGATTATTCTTGGAGAAAGTACGGTCAAAAACCCATCAAGGGTTCCCCTCATCCAAGAGGGTATTACAAGTGTAGCAGCCAGAGAGGTTGCCTTGCACGCAAGCACGTGGAGCGCGCTGTAGACGATCCGACCATGCTAGGCCGGAGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

326

Amino Acids

35.3

Weight (kDa)

9.63

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	268, 298, 559
AccI	GTMKAC	2 cut(s)	720, 945
AccII	CGCG	2 cut(s)	575, 939
AclWI	GGATC	4 cut(s)	602, 615, 754, 944
AcoI	YGGCCR	2 cut(s)	189, 241
AcsI	RAATTY	2 cut(s)	321, 577
AcvI	CACGTG	1 cut(s)	931
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	3 cut(s)	163, 238, 845
AfiI	CCNNNNNNNGG	4 cut(s)	121, 255, 295, 863
AgsI	TTSAA	4 cut(s)	336, 466, 641, 700
AluBI	AGCT	4 cut(s)	158, 263, 295, 714
AluI	AGCT	4 cut(s)	158, 263, 295, 714
Alw21I	GWGCWC	1 cut(s)	506
Alw26I	GTCTC	2 cut(s)	322, 740
AlwI	GGATC	4 cut(s)	602, 615, 754, 944
AoxI	GGCC	5 cut(s)	75, 189, 241, 674, 964
ApeKI	GCWGC	8 cut(s)	41, 292, 445, 527, 530, 711, 762, 900
ApoI	RAATTY	2 cut(s)	321, 577
Asp700I	GAANNNNTTC	1 cut(s)	581
AspLEI	GCGC	4 cut(s)	562, 762, 939, 941
AsuC2I	CCSGG	2 cut(s)	250, 757
AsuHPI	GGTGA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	607
BanI	GGYRCC	3 cut(s)	268, 298, 559
BbrPI	CACGTG	1 cut(s)	931
BbsI	GAAGAC	3 cut(s)	314, 657, 678
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	8 cut(s)	53, 304, 432, 514, 517, 723, 749, 912
BccI	CCATC	5 cut(s)	13, 43, 511, 548, 866
BceAI	ACGGC	2 cut(s)	161, 176
BcgI	CGANNNNNNTGC	2 cut(s)	700, 734
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	250, 757
BcoDI	GTCTC	2 cut(s)	322, 740
BfaI	CTAG	1 cut(s)	962
BfmI	CTRYAG	2 cut(s)	290, 942
BfoI	RGCGCY	2 cut(s)	563, 763
BlpI	GCTNAGC	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	250, 757
BmiI	GGNNCC	6 cut(s)	270, 300, 561, 609, 786, 868
BmrFI	CCNGG	2 cut(s)	250, 757
BmrI	ACTGGG	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	3 cut(s)	314, 657, 678
BplI	GAGNNNNNCTC	4 cut(s)	62, 94, 356, 388
Bpu1102I	GCTNAGC	1 cut(s)	615
BpuMI	CCSGG	2 cut(s)	250, 757
Bsa29I	ATCGAT	1 cut(s)	623
BsaAI	YACGTR	1 cut(s)	931
BsaHI	GRCGYC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	177
BsaWI	WCCGGW	3 cut(s)	265, 475, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 255, 295, 863
Bse118I	RCCGGY	2 cut(s)	239, 424
Bse1I	ACTGG	3 cut(s)	471, 607, 810
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	3 cut(s)	54, 239, 874
BseLI	CCNNNNNNNGG	4 cut(s)	121, 255, 295, 863
BseMII	CTCAG	3 cut(s)	317, 498, 606
BseNI	ACTGG	3 cut(s)	471, 607, 810
BsePI	GCGCGC	1 cut(s)	937
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	8 cut(s)	53, 304, 432, 514, 517, 723, 749, 912
BsgI	GTGCAG	1 cut(s)	730
Bsh1236I	CGCG	2 cut(s)	575, 939
BshFI	GGCC	5 cut(s)	77, 191, 243, 676, 966
BshNI	GGYRCC	3 cut(s)	268, 298, 559
BshVI	ATCGAT	1 cut(s)	623
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	9 cut(s)	84, 240, 250, 266, 425, 476, 739, 756, 967
BslI	CCNNNNNNNGG	4 cut(s)	121, 255, 295, 863
BsmAI	GTCTC	2 cut(s)	322, 740
BsmBI	CGTCTC	1 cut(s)	740
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	77, 191, 243, 676, 966
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
Bsp1720I	GCTNAGC	1 cut(s)	615
BspANI	GGCC	5 cut(s)	77, 191, 243, 676, 966
BspCNI	CTCAG	3 cut(s)	318, 499, 607
BspDI	ATCGAT	1 cut(s)	623
BspFNI	CGCG	2 cut(s)	575, 939
BspLI	GGNNCC	6 cut(s)	270, 300, 561, 609, 786, 868
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	4 cut(s)	602, 615, 754, 944
BspT107I	GGYRCC	3 cut(s)	268, 298, 559
BspTNI	GGTCTC	1 cut(s)	322
BsrFI	RCCGGY	2 cut(s)	239, 424
BsrI	ACTGG	3 cut(s)	471, 607, 810
BssAI	RCCGGY	2 cut(s)	239, 424
BssECI	CCNNGG	1 cut(s)	177
BssHII	GCGCGC	1 cut(s)	937
BssMI	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
BssNI	GRCGYC	1 cut(s)	560
Bst4CI	ACNGT	3 cut(s)	35, 660, 848
Bst6I	CTCTTC	2 cut(s)	634, 695
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstBAI	YACGTR	1 cut(s)	931
BstC8I	GCNNGC	4 cut(s)	437, 922, 926, 939
BstDEI	CTNAG	4 cut(s)	326, 507, 615, 774
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	54, 239, 874
BstFNI	CGCG	2 cut(s)	575, 939
BstH2I	RGCGCY	2 cut(s)	563, 763
BstHHI	GCGC	4 cut(s)	562, 762, 939, 941
BstKTI	GATC	6 cut(s)	355, 610, 627, 749, 952, 974
BstMAI	GTCTC	2 cut(s)	322, 740
BstMBI	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
BstSCI	CCNGG	2 cut(s)	248, 755
BstSFI	CTRYAG	2 cut(s)	290, 942
BstUI	CGCG	2 cut(s)	575, 939
BstV1I	GCAGC	8 cut(s)	53, 304, 432, 514, 517, 723, 749, 912
BstV2I	GAAGAC	3 cut(s)	314, 657, 678
BstX2I	RGATCY	2 cut(s)	607, 746
BstYI	RGATCY	2 cut(s)	607, 746
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	5 cut(s)	77, 191, 243, 676, 966
BsuTUI	ATCGAT	1 cut(s)	623
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	54, 239, 874
BtsI	GCAGTG	1 cut(s)	766
BtsIMutI	CAGTG	1 cut(s)	766
Cac8I	GCNNGC	4 cut(s)	437, 922, 926, 939
CfoI	GCGC	4 cut(s)	562, 762, 939, 941
Cfr10I	RCCGGY	2 cut(s)	239, 424
ClaI	ATCGAT	1 cut(s)	623
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	162, 237, 844
CviAII	CATG	4 cut(s)	187, 350, 799, 958
CviQI	GTAC	3 cut(s)	162, 237, 844
DdeI	CTNAG	4 cut(s)	326, 507, 615, 774
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	6 cut(s)	354, 609, 626, 748, 951, 973
DpnII	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
EaeI	YGGCCR	2 cut(s)	189, 241
Eam1104I	CTCTTC	2 cut(s)	634, 695
EarI	CTCTTC	2 cut(s)	634, 695
EciI	GGCGGA	3 cut(s)	70, 197, 270
Eco31I	GGTCTC	1 cut(s)	322
Eco72I	CACGTG	1 cut(s)	931
EcoRI	GAATTC	1 cut(s)	577
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	4 cut(s)	190, 353, 802, 961
FaiI	YATR	6 cut(s)	171, 188, 351, 653, 800, 959
FatI	CATG	4 cut(s)	186, 349, 798, 957
FauI	CCCGC	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	720, 945
FokI	GGATG	3 cut(s)	61, 246, 861
FspBI	CTAG	1 cut(s)	962
GlaI	GCGC	4 cut(s)	561, 761, 938, 940
HaeII	RGCGCY	2 cut(s)	563, 763
HaeIII	GGCC	5 cut(s)	77, 191, 243, 676, 966
HapII	CCGG	9 cut(s)	84, 240, 250, 266, 425, 476, 739, 756, 967
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	4 cut(s)	562, 762, 939, 941
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	4 cut(s)	190, 353, 802, 961
Hin6I	GCGC	4 cut(s)	560, 760, 937, 939
HinP1I	GCGC	4 cut(s)	560, 760, 937, 939
HincII	GTYRAC	2 cut(s)	31, 721
HindII	GTYRAC	2 cut(s)	31, 721
HinfI	GANTC	2 cut(s)	87, 521
HpaII	CCGG	9 cut(s)	84, 240, 250, 266, 425, 476, 739, 756, 967
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	3 cut(s)	31, 721, 946
Hpy188III	TCNNGA	3 cut(s)	91, 100, 975
Hpy8I	GTNNAC	3 cut(s)	31, 721, 946
Hpy99I	CGWCG	6 cut(s)	101, 145, 148, 694, 697, 722
HpyAV	CCTTC	2 cut(s)	61, 342
HpyCH4III	ACNGT	3 cut(s)	35, 660, 848
HpyCH4IV	ACGT	2 cut(s)	140, 930
HpyCH4V	TGCA	5 cut(s)	41, 292, 711, 791, 920
HpyF3I	CTNAG	4 cut(s)	326, 507, 615, 774
HpySE526I	ACGT	2 cut(s)	140, 930
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	4 cut(s)	190, 353, 802, 961
HspAI	GCGC	4 cut(s)	560, 760, 937, 939
KasI	GGCGCC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
LmnI	GCTCC	3 cut(s)	268, 719, 934
Lsp1109I	GCAGC	8 cut(s)	53, 304, 432, 514, 517, 723, 749, 912
MaeI	CTAG	1 cut(s)	962
MaeII	ACGT	2 cut(s)	140, 930
MaeIII	GTNAC	2 cut(s)	193, 654
MalI	GATC	6 cut(s)	354, 609, 626, 748, 951, 973
MboI	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
MboII	GAAGA	6 cut(s)	319, 387, 621, 657, 678, 712
MflI	RGATCY	2 cut(s)	607, 746
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	5 cut(s)	321, 336, 577, 641, 792
Mly113I	GGCGCC	1 cut(s)	560
MmeI	TCCRAC	2 cut(s)	204, 977
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	2 cut(s)	405, 596
MslI	CAYNNNNRTG	1 cut(s)	191
MspA1I	CMGCKG	3 cut(s)	295, 445, 614
MspI	CCGG	9 cut(s)	84, 240, 250, 266, 425, 476, 739, 756, 967
MspR9I	CCNGG	2 cut(s)	250, 757
Mva1269I	GAATGC	1 cut(s)	64
MvnI	CGCG	2 cut(s)	575, 939
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	2 cut(s)	250, 757
NdeII	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
NlaIII	CATG	4 cut(s)	190, 353, 802, 961
NlaIV	GGNNCC	6 cut(s)	270, 300, 561, 609, 786, 868
NmuCI	GTSAC	2 cut(s)	193, 654
PauI	GCGCGC	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	1 cut(s)	587
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	2 cut(s)	87, 521
PluTI	GGCGCC	1 cut(s)	563
PmaCI	CACGTG	1 cut(s)	931
PmlI	CACGTG	1 cut(s)	931
Ppu21I	YACGTR	1 cut(s)	931
PspCI	CACGTG	1 cut(s)	931
PspN4I	GGNNCC	6 cut(s)	270, 300, 561, 609, 786, 868
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	2 cut(s)	607, 746
PteI	GCGCGC	1 cut(s)	937
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	3 cut(s)	163, 238, 845
RsaNI	GTAC	3 cut(s)	162, 237, 844
RseI	CAYNNNNRTG	1 cut(s)	191
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	405, 596
Sau3AI	GATC	6 cut(s)	352, 607, 624, 746, 949, 971
ScrFI	CCNGG	2 cut(s)	250, 757
SduI	GDGCHC	1 cut(s)	506
SfcI	CTRYAG	2 cut(s)	290, 942
SfoI	GGCGCC	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	5 cut(s)	321, 336, 577, 641, 792
SspDI	GGCGCC	1 cut(s)	559
SspMI	CTAG	1 cut(s)	962
StyD4I	CCNGG	2 cut(s)	248, 755
TaaI	ACNGT	3 cut(s)	35, 660, 848
TaiI	ACGT	2 cut(s)	143, 933
TaqI	TCGA	4 cut(s)	99, 146, 623, 720
TasI	AATT	5 cut(s)	321, 336, 577, 641, 792
TauI	GCSGC	7 cut(s)	77, 442, 445, 451, 536, 575, 679
TfiI	GAWTC	2 cut(s)	87, 521
Tru1I	TTAA	2 cut(s)	405, 596
Tru9I	TTAA	2 cut(s)	405, 596
TscAI	CASTG	1 cut(s)	773
TseFI	GTSAC	2 cut(s)	193, 654
TseI	GCWGC	8 cut(s)	41, 292, 445, 527, 530, 711, 762, 900
Tsp45I	GTSAC	2 cut(s)	193, 654
TspDTI	ATGAA	3 cut(s)	97, 574, 815
TspGWI	ACGGA	2 cut(s)	179, 706
TspRI	CASTG	1 cut(s)	773
XapI	RAATTY	2 cut(s)	321, 577
XmiI	GTMKAC	2 cut(s)	720, 945
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.