Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

4463383 .. 4464912

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCCCTGGAACTAATGATGGGATTGATTGACAGTTTTGCAGCGAAGAGGGAGGAGAATGCCGTGAAGGAGGCGGCCTCCGCCGGAATCCAGAGCGTCGAGAAGTTTATCAGCTTGATTTCGCAACACCATCACCAGTCGGTGTCGTCGAACACGGAAGATGAAACGGAGTATAAAGAGGTGGCGGACATGGCAGTGACCAAGTTCAGGAAGGTCATTTCGTTGTTGGACAAAGGAAGAATCGGCCACGCTCGGTTCCGGAAAGCTCCGGTAACCCAAATTCCGACACCTTCAATTTCAGAACCCCATGATCAAGAAACAGAGCAACCTTCTGTTTTCAGAGCAGAACAATCTTCTGCTTTCAAGGTTTACTGTCCGACGCCGGTTGTTCGCCTTCCGCCCCTGCCGCAAAATCCTCATCTAAAAACTACTCCGGTTGCGCTGAAAAAAGGTATTGGGTGCGCTGAGAGAAAGATGGATTTTGCTGCTGCTGCTACCATCAGCTTCTCGCCTTCGGCACCCAAAACTGCCGCGAATTCATTCATTTCTTCTTTAACTGCTGGGGATGCTGCTGAGCAATCGATCTCTTCTGGGTTTCAATTCACAAACATGTCGCAGTCGTCTTCCGGTAGGCCGCCGCTGTCTTCGTCGTCGTTGAAGAGGAAGTGCAGCTCCGTCGACAATGTTTCTCGTCTCCGGTGCGGCTCTACTACTGGGCGTTGCCACTGTTCGAAGACAAGGGTTCCTGCAATTAGTATGAAATTGGCTGATATTCCACCTGATGATTATTCTTGGAGAAAGTACGGTCAAAAACCCATCAAGGGTTCCCCTTATCCAAGAGGGTATTACAAGTGTAGCAGCGAGAGAGGTTGCCTTGCACGCAAGCACGTGGAGCGCGCTGTAGACGATCCCACCATGCTGATCGTGACCTACGAAGGCGATCACAATCACTCCCTCAGCGTCACCGATCCAACGGCCACCCTCATCCTCGAATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

334

Amino Acids

36.29

Weight (kDa)

9.02

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	2 cut(s)	678, 903
AccII	CGCG	2 cut(s)	533, 897
AccIII	TCCGGA	1 cut(s)	258
AciI	CCGC	9 cut(s)	74, 81, 185, 398, 407, 531, 635, 638, 702
AclWI	GGATC	2 cut(s)	902, 962
AcoI	YGGCCR	2 cut(s)	244, 975
AcsI	RAATTY	2 cut(s)	279, 535
AcvI	CACGTG	1 cut(s)	889
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	803
AfiI	CCNNNNNNNGG	2 cut(s)	207, 821
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	4 cut(s)	294, 364, 599, 658
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	114, 266, 504, 672
AluI	AGCT	4 cut(s)	114, 266, 504, 672
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	2 cut(s)	902, 962
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	5 cut(s)	3, 75, 244, 632, 975
ApeKI	GCWGC	7 cut(s)	41, 485, 488, 491, 569, 669, 858
ApoI	RAATTY	2 cut(s)	279, 535
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	4 cut(s)	442, 464, 897, 899
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	125, 955
AsuII	TTCGAA	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	889
BbsI	GAAGAC	3 cut(s)	615, 636, 740
BbvCI	CCTCAGC	1 cut(s)	956
BbvI	GCAGC	7 cut(s)	53, 472, 475, 478, 556, 681, 870
BccI	CCATC	5 cut(s)	13, 138, 469, 506, 824
BceAI	ACGGC	2 cut(s)	47, 990
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	900
BlpI	GCTNAGC	1 cut(s)	573
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	257, 519, 744, 826
BmrFI	CCNGG	1 cut(s)	8
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	1 cut(s)	556
BmuI	ACTGGG	1 cut(s)	723
BpiI	GAAGAC	3 cut(s)	615, 636, 740
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu10I	CCTNAGC	1 cut(s)	956
Bpu1102I	GCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	889
BsaBI	GATNNNNATC	1 cut(s)	945
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	5 cut(s)	258, 268, 433, 626, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 821
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	136, 718
Bse8I	GATNNNNATC	1 cut(s)	945
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	571, 984
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	2 cut(s)	207, 821
BseMII	CTCAG	3 cut(s)	456, 564, 970
BseNI	ACTGG	2 cut(s)	136, 718
BsePI	GCGCGC	1 cut(s)	895
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	7 cut(s)	53, 472, 475, 478, 556, 681, 870
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	533, 897
BshFI	GGCC	5 cut(s)	5, 77, 246, 634, 977
BshNI	GGYRCC	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	581
BsiSI	CCGG	7 cut(s)	84, 259, 269, 383, 434, 627, 697
BslI	CCNNNNNNNGG	2 cut(s)	207, 821
BsmAI	GTCTC	1 cut(s)	698
BsmBI	CGTCTC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	5, 77, 246, 634, 977
Bsp119I	TTCGAA	1 cut(s)	731
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
Bsp1720I	GCTNAGC	1 cut(s)	573
BspACI	CCGC	9 cut(s)	74, 81, 185, 398, 407, 531, 635, 638, 702
BspANI	GGCC	5 cut(s)	5, 77, 246, 634, 977
BspCNI	CTCAG	3 cut(s)	457, 565, 969
BspDI	ATCGAT	1 cut(s)	581
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	533, 897
BspLI	GGNNCC	4 cut(s)	257, 519, 744, 826
BspPI	GGATC	2 cut(s)	902, 962
BspT104I	TTCGAA	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	136, 718
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	1 cut(s)	6
BssHII	GCGCGC	1 cut(s)	895
BssMI	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
BssNI	GRCGYC	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	35, 374, 728, 806
Bst6I	CTCTTC	3 cut(s)	41, 592, 653
BstACI	GRCGYC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	889
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	880, 884, 897
BstDEI	CTNAG	3 cut(s)	465, 573, 956
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	2 cut(s)	571, 984
BstFNI	CGCG	2 cut(s)	533, 897
BstHHI	GCGC	4 cut(s)	442, 464, 897, 899
BstKTI	GATC	6 cut(s)	313, 585, 910, 924, 943, 970
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 879, 892
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	900
BstUI	CGCG	2 cut(s)	533, 897
BstV1I	GCAGC	7 cut(s)	53, 472, 475, 478, 556, 681, 870
BstV2I	GAAGAC	3 cut(s)	615, 636, 740
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	5 cut(s)	5, 77, 246, 634, 977
BsuTUI	ATCGAT	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	571, 984
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 724
Cac8I	GCNNGC	3 cut(s)	880, 884, 897
CfoI	GCGC	4 cut(s)	442, 464, 897, 899
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	3 cut(s)	85, 388, 949
Csp6I	GTAC	1 cut(s)	802
CviAII	CATG	4 cut(s)	190, 308, 610, 916
CviQI	GTAC	1 cut(s)	802
DdeI	CTNAG	3 cut(s)	465, 573, 956
DpnI	GATC	6 cut(s)	312, 584, 909, 923, 942, 969
DpnII	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
EaeI	YGGCCR	2 cut(s)	244, 975
Eam1104I	CTCTTC	3 cut(s)	41, 592, 653
EarI	CTCTTC	3 cut(s)	41, 592, 653
EciI	GGCGGA	3 cut(s)	70, 200, 387
Eco72I	CACGTG	1 cut(s)	889
Eco91I	GGTNACC	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	4 cut(s)	193, 311, 613, 919
FaiI	YATR	6 cut(s)	174, 191, 309, 611, 758, 917
FatI	CATG	4 cut(s)	189, 307, 609, 915
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	678, 903
FokI	GGATG	2 cut(s)	578, 971
GlaI	GCGC	4 cut(s)	441, 463, 896, 898
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	5 cut(s)	5, 77, 246, 634, 977
HapII	CCGG	7 cut(s)	84, 259, 269, 383, 434, 627, 697
HgaI	GACGC	3 cut(s)	85, 388, 949
HhaI	GCGC	4 cut(s)	442, 464, 897, 899
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	4 cut(s)	193, 311, 613, 919
Hin6I	GCGC	4 cut(s)	440, 462, 895, 897
HinP1I	GCGC	4 cut(s)	440, 462, 895, 897
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	87, 240, 992
HpaII	CCGG	7 cut(s)	84, 259, 269, 383, 434, 627, 697
HphI	GGTGA	2 cut(s)	125, 955
Hpy166II	GTNNAC	3 cut(s)	370, 679, 904
Hpy188I	TCNGA	4 cut(s)	285, 301, 341, 378
Hpy188III	TCNNGA	7 cut(s)	91, 100, 208, 259, 314, 925, 999
Hpy8I	GTNNAC	3 cut(s)	370, 679, 904
Hpy99I	CGWCG	6 cut(s)	101, 151, 382, 652, 655, 680
HpyAV	CCTTC	7 cut(s)	61, 205, 300, 339, 404, 522, 929
HpyCH4III	ACNGT	4 cut(s)	35, 374, 728, 806
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	4 cut(s)	41, 669, 749, 878
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 879, 892
HpyF3I	CTNAG	3 cut(s)	465, 573, 956
HpySE526I	ACGT	1 cut(s)	888
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	193, 311, 613, 919
HspAI	GCGC	4 cut(s)	440, 462, 895, 897
Kpn2I	TCCGGA	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
LmnI	GCTCC	3 cut(s)	271, 677, 892
Lsp1109I	GCAGC	7 cut(s)	53, 472, 475, 478, 556, 681, 870
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	4 cut(s)	196, 271, 925, 961
MalI	GATC	6 cut(s)	312, 584, 909, 923, 942, 969
MboI	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
MluCI	AATT	6 cut(s)	279, 294, 535, 599, 750, 761
MmeI	TCCRAC	4 cut(s)	207, 308, 401, 995
MroI	TCCGGA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	1 cut(s)	554
MslI	CAYNNNNRTG	2 cut(s)	194, 608
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	7 cut(s)	84, 259, 269, 383, 434, 627, 697
MspR9I	CCNGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	533, 897
MwoI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 879, 892
NdeII	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
NlaIII	CATG	4 cut(s)	193, 311, 613, 919
NlaIV	GGNNCC	4 cut(s)	257, 519, 744, 826
NmuCI	GTSAC	3 cut(s)	196, 925, 961
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	731
PauI	GCGCGC	1 cut(s)	895
PciI	ACATGT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 930
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	87, 240, 992
PmaCI	CACGTG	1 cut(s)	889
PmlI	CACGTG	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	889
PscI	ACATGT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	6
PspCI	CACGTG	1 cut(s)	889
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	4 cut(s)	257, 519, 744, 826
PspPI	GGNCC	1 cut(s)	4
PteI	GCGCGC	1 cut(s)	895
RsaI	GTAC	1 cut(s)	803
RsaNI	GTAC	1 cut(s)	802
RseI	CAYNNNNRTG	2 cut(s)	194, 608
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	554
Sau3AI	GATC	6 cut(s)	310, 582, 907, 921, 940, 967
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	900
SfuI	TTCGAA	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	194, 608
Sse9I	AATT	6 cut(s)	279, 294, 535, 599, 750, 761
SsiI	CCGC	9 cut(s)	74, 81, 185, 398, 407, 531, 635, 638, 702
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	4 cut(s)	35, 374, 728, 806
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	6 cut(s)	99, 149, 581, 678, 731, 990
TasI	AATT	6 cut(s)	279, 294, 535, 599, 750, 761
TauI	GCSGC	6 cut(s)	77, 409, 533, 637, 640, 705
TfiI	GAWTC	3 cut(s)	87, 240, 992
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TscAI	CASTG	2 cut(s)	201, 731
TseFI	GTSAC	3 cut(s)	196, 925, 961
TseI	GCWGC	7 cut(s)	41, 485, 488, 491, 569, 669, 858
Tsp45I	GTSAC	3 cut(s)	196, 925, 961
TspDTI	ATGAA	4 cut(s)	177, 528, 532, 773
TspGWI	ACGGA	3 cut(s)	170, 182, 664
TspRI	CASTG	2 cut(s)	201, 731
XapI	RAATTY	2 cut(s)	279, 535
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	2 cut(s)	678, 903
XmnI	GAANNNNTTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.