Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Forward (+)

3192665 .. 3193992

Gene Structure 1328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGTTTTGCAGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCGTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATAGAATACAAAGCTGTTGCGGACATGGCGGTGAATAAGTTCAGAAAGGTTATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAATAGAGCAGTCTTCATTTCAGTGTCAAGAGGCTCTAAATATGAAGACAGAGCAATCCCAATCCTCATCTGCTATCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTTGTTTCTATTTCTCGGCTTCTCCGGCGGTTTCAGGTTCGAATTCGTTTATGTCTGGGGACGGCGAGACTACTACTCTGCAACACTCGATGTCGTCCGGGTTTCAATTGACGAACATGTCAAACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTGTCATTCTGTGGATGATGCGGCGGCTCTCATGTGTGGCTCGTCCTCTTCAAGATGCCACTGTTCCAAGAAAAGGAAATCAAGAGTTAAGAGAGTGACGAGAATCCCTGCTATTAGTACGAAAATGGCTGATATCCCAGCTGATGAGTATTCATGGAGAAAGTACGGCCAAAAACCAATCAAGGGTTCCCCTCATCCAAGAGGGTACTACAAGTGCAGTAGCCAGAGAGGGTGCCCTGCACGAAAACACGTAGAGCGAGCTGTAGATGATCCGAGCATGCTGATAGTGACGTACGAAGGCGATCACAATCACTCCCAAGCTGTCACGGAGGCCATGGCAGCCATCGTCCTCGAATCGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

326

Amino Acids

35.27

Weight (kDa)

9.34

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	203 - 249	3.7e-16	Plant zinc cluster domain
WRKY	PF03106	253 - 309	1.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	846
AciI	CCGC	6 cut(s)	173, 182, 413, 461, 635, 638
AclWI	GGATC	3 cut(s)	82, 95, 878
AcoI	YGGCCR	1 cut(s)	781
AcsI	RAATTY	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	5 cut(s)	433, 733, 779, 821, 908
AfiI	CCNNNNNNNGG	3 cut(s)	84, 687, 797
AflIII	ACRYGT	3 cut(s)	549, 558, 862
AgeI	ACCGGT	2 cut(s)	230, 397
AgsI	TTSAA	3 cut(s)	135, 539, 666
AhlI	ACTAGT	2 cut(s)	286, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AluBI	AGCT	6 cut(s)	13, 114, 167, 755, 875, 935
AluI	AGCT	6 cut(s)	13, 114, 167, 755, 875, 935
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	3 cut(s)	82, 95, 878
AoxI	GGCC	2 cut(s)	781, 945
ApeKI	GCWGC	4 cut(s)	41, 74, 149, 953
ApoI	RAATTY	1 cut(s)	475
AsiGI	ACCGGT	2 cut(s)	230, 397
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	2 cut(s)	247, 473
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	851
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	846
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	117, 306, 353, 561
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	4 cut(s)	53, 86, 136, 965
BccI	CCATC	2 cut(s)	13, 965
BceAI	ACGGC	2 cut(s)	511, 796
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	2 cut(s)	286, 428
BfaI	CTAG	2 cut(s)	287, 429
BfmI	CTRYAG	1 cut(s)	876
BisI	GCNGC	6 cut(s)	42, 75, 150, 636, 639, 954
BlsI	GCNGC	6 cut(s)	43, 76, 151, 637, 640, 955
BmcAI	AGTACT	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	532
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	89, 802, 848
BmrFI	CCNGG	1 cut(s)	532
BmsI	GCATC	2 cut(s)	622, 659
BpiI	GAAGAC	4 cut(s)	117, 306, 353, 561
Bpu14I	TTCGAA	2 cut(s)	247, 473
BpuMI	CCSGG	1 cut(s)	532
BsaAI	YACGTR	1 cut(s)	865
BsaBI	GATNNNNATC	1 cut(s)	921
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	78, 948
BsaWI	WCCGGW	2 cut(s)	230, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	911, 941
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 687, 797
Bse118I	RCCGGY	2 cut(s)	230, 397
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	921
BseDI	CCNNGG	2 cut(s)	78, 948
BseGI	GGATG	2 cut(s)	634, 808
BseJI	GATNNNNATC	1 cut(s)	921
BseLI	CCNNNNNNNGG	3 cut(s)	84, 687, 797
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	576
BseSI	GKGCMC	1 cut(s)	851
BseXI	GCAGC	4 cut(s)	53, 86, 136, 965
BseYI	CCCAGC	2 cut(s)	83, 751
BsgI	GTGCAG	2 cut(s)	837, 850
BshFI	GGCC	2 cut(s)	783, 947
BshNI	GGYRCC	1 cut(s)	846
BshTI	ACCGGT	2 cut(s)	230, 397
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	231, 398, 458, 531
BsiWI	CGTACG	1 cut(s)	906
BslFI	GGGAC	2 cut(s)	375, 506
BslI	CCNNNNNNNGG	3 cut(s)	84, 687, 797
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	375, 506
BsnI	GGCC	2 cut(s)	783, 947
Bsp119I	TTCGAA	2 cut(s)	247, 473
Bsp1286I	GDGCHC	2 cut(s)	15, 851
Bsp143I	GATC	3 cut(s)	87, 883, 916
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	6 cut(s)	173, 182, 413, 461, 635, 638
BspANI	GGCC	2 cut(s)	783, 947
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	89, 802, 848
BspPI	GGATC	3 cut(s)	82, 95, 878
BspT104I	TTCGAA	2 cut(s)	247, 473
BspT107I	GGYRCC	1 cut(s)	846
BsrFI	RCCGGY	2 cut(s)	230, 397
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	2 cut(s)	230, 397
BssECI	CCNNGG	2 cut(s)	78, 948
BssMI	GATC	3 cut(s)	87, 883, 916
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	948
Bst4CI	ACNGT	2 cut(s)	35, 677
Bst6I	CTCTTC	4 cut(s)	48, 244, 594, 667
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	865
BstBI	TTCGAA	2 cut(s)	247, 473
BstC8I	GCNNGC	2 cut(s)	873, 893
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	2 cut(s)	634, 808
BstKTI	GATC	3 cut(s)	90, 886, 919
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	87, 883, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 953
BstNSI	RCATGY	3 cut(s)	553, 562, 895
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	1 cut(s)	851
BstV1I	GCAGC	4 cut(s)	53, 86, 136, 965
BstV2I	GAAGAC	4 cut(s)	117, 306, 353, 561
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	783, 947
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	634, 808
BtsIMutI	CAGTG	3 cut(s)	329, 570, 673
Cac8I	GCNNGC	2 cut(s)	873, 893
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	2 cut(s)	230, 397
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	5 cut(s)	432, 732, 778, 820, 907
CspAI	ACCGGT	2 cut(s)	230, 397
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	8 cut(s)	16, 178, 550, 559, 646, 768, 892, 949
CviQI	GTAC	5 cut(s)	432, 732, 778, 820, 907
DpnI	GATC	3 cut(s)	89, 885, 918
DpnII	GATC	3 cut(s)	87, 883, 916
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	781
Eam1104I	CTCTTC	4 cut(s)	48, 244, 594, 667
EarI	CTCTTC	4 cut(s)	48, 244, 594, 667
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	948
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	948
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	948
FaeI	CATG	8 cut(s)	19, 181, 553, 562, 649, 771, 895, 952
FaqI	GGGAC	2 cut(s)	375, 506
FatI	CATG	8 cut(s)	15, 177, 549, 558, 645, 767, 891, 948
Fnu4HI	GCNGC	6 cut(s)	42, 75, 150, 636, 639, 954
FokI	GGATG	2 cut(s)	641, 795
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	6 cut(s)	42, 75, 150, 636, 639, 954
FspBI	CTAG	2 cut(s)	287, 429
GluI	GCNGC	6 cut(s)	42, 75, 150, 636, 639, 954
GsaI	CCCAGC	2 cut(s)	87, 755
HaeIII	GGCC	2 cut(s)	783, 947
HapII	CCGG	4 cut(s)	231, 398, 458, 531
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	8 cut(s)	19, 181, 553, 562, 649, 771, 895, 952
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	2 cut(s)	717, 968
HpaII	CCGG	4 cut(s)	231, 398, 458, 531
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	31, 275, 410
Hpy188I	TCNGA	2 cut(s)	197, 888
Hpy188III	TCNNGA	5 cut(s)	16, 91, 329, 666, 696
Hpy8I	GTNNAC	3 cut(s)	31, 275, 410
Hpy99I	CGWCG	2 cut(s)	604, 976
HpyAV	CCTTC	2 cut(s)	603, 905
HpyCH4III	ACNGT	2 cut(s)	35, 677
HpyCH4IV	ACGT	3 cut(s)	63, 864, 905
HpyCH4V	TGCA	4 cut(s)	41, 514, 831, 854
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 953
HpySE526I	ACGT	3 cut(s)	63, 864, 905
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	8 cut(s)	19, 181, 553, 562, 649, 771, 895, 952
Kzo9I	GATC	3 cut(s)	87, 883, 916
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	4 cut(s)	53, 86, 136, 965
LweI	GCATC	2 cut(s)	622, 659
MaeI	CTAG	2 cut(s)	287, 429
MaeII	ACGT	3 cut(s)	63, 864, 905
MaeIII	GTNAC	5 cut(s)	233, 259, 709, 901, 937
MalI	GATC	3 cut(s)	89, 885, 918
MboI	GATC	3 cut(s)	87, 883, 916
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	2 cut(s)	15, 851
MluCI	AATT	2 cut(s)	475, 539
MmeI	TCCRAC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	605, 702
MslI	CAYNNNNRTG	3 cut(s)	182, 322, 563
MspA1I	CMGCKG	1 cut(s)	755
MspI	CCGG	4 cut(s)	231, 398, 458, 531
MspR9I	CCNGG	1 cut(s)	532
MunI	CAATTG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	80, 179, 412, 458, 953
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	3 cut(s)	87, 883, 916
NlaIII	CATG	8 cut(s)	19, 181, 553, 562, 649, 771, 895, 952
NlaIV	GGNNCC	3 cut(s)	89, 802, 848
NmeAIII	GCCGAG	2 cut(s)	59, 428
NmuCI	GTSAC	5 cut(s)	233, 259, 709, 901, 937
NspI	RCATGY	3 cut(s)	553, 562, 895
NspV	TTCGAA	2 cut(s)	247, 473
PaeI	GCATGC	1 cut(s)	895
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	2 cut(s)	549, 558
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	717, 968
Pfl23II	CGTACG	1 cut(s)	906
PinAI	ACCGGT	2 cut(s)	230, 397
PkrI	GCNGC	6 cut(s)	43, 76, 151, 637, 640, 955
Ppu21I	YACGTR	1 cut(s)	865
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	2 cut(s)	549, 558
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	2 cut(s)	83, 751
PspLI	CGTACG	1 cut(s)	906
PspN4I	GGNNCC	3 cut(s)	89, 802, 848
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	5 cut(s)	433, 733, 779, 821, 908
RsaNI	GTAC	5 cut(s)	432, 732, 778, 820, 907
RseI	CAYNNNNRTG	3 cut(s)	182, 322, 563
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	605, 702
SatI	GCNGC	6 cut(s)	42, 75, 150, 636, 639, 954
Sau3AI	GATC	3 cut(s)	87, 883, 916
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	15, 851
SfaNI	GCATC	2 cut(s)	622, 659
SfcI	CTRYAG	1 cut(s)	876
SfuI	TTCGAA	2 cut(s)	247, 473
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	3 cut(s)	182, 322, 563
SpeI	ACTAGT	2 cut(s)	286, 428
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	2 cut(s)	475, 539
SsiI	CCGC	6 cut(s)	173, 182, 413, 461, 635, 638
SspMI	CTAG	2 cut(s)	287, 429
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	530
StyI	CCWWGG	1 cut(s)	948
TaaI	ACNGT	2 cut(s)	35, 677
TaiI	ACGT	3 cut(s)	66, 867, 908
TaqI	TCGA	4 cut(s)	247, 473, 521, 966
TasI	AATT	2 cut(s)	475, 539
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	2 cut(s)	638, 641
TfiI	GAWTC	2 cut(s)	717, 968
Tru1I	TTAA	2 cut(s)	605, 702
Tru9I	TTAA	2 cut(s)	605, 702
TscAI	CASTG	3 cut(s)	329, 570, 680
TseFI	GTSAC	5 cut(s)	233, 259, 709, 901, 937
TseI	GCWGC	4 cut(s)	41, 74, 149, 953
Tsp45I	GTSAC	5 cut(s)	233, 259, 709, 901, 937
TspDTI	ATGAA	5 cut(s)	97, 198, 306, 359, 756
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	3 cut(s)	329, 570, 680
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	3 cut(s)	553, 562, 895
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	287, 429
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.