Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

81023339 .. 81024070

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG522200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCTGTGGAGCTCATGATGGGTCTGGTTGACAGCTTTGCAGCCAAAATGGAAGAGAATGACGTCAAGGAAGCAGCCTCGGCTGGGATCCAGAGCGTTGAGAAGTTCATAAGCTTGATGTCTTCTTCTTCTTCAACCCCTGAAAGTGCTGCCATAGAATACAAAGCTGTTGCGGACATGGCGGTGATTAAGTTCAGGAAGGTCATTTCATTGTTGGATAGAGGAAGAACCGGTCACGCTCGTTTTCGAAGAGGTCCTGTGACTACTACCAGTCCACAATCGCCACTAGTTTTGACCAAAGAAACAGAGCAGTCTTCATTTCAGTTTCAAGAGGCTCTAAATATGAAGACAGAACAATCCCAATCCTCATCTGCTTTCAAGGTTTATTGTCCCAAACCGGTTCTGCGTTTACCGCCTCTGCCAAAGACTAGTACTAGTTTCAATTTCTCGGCTTCGCCGGCCGTTTCAGGTTCGAATTCGTTTATGTCTAGGGACGGCGAGACTACTACTCTGCAACACTCGATGTCGTCCGGTTTTCAATTGACGAACATGTCAGTGTCTTCTGCTGGTAAGCCTCCTCTTCCTTCTTCGTCGTTAAAGAGGAAGTGTCATTCTGTGGATGATGCGGCGGCTCTCAGGTGTGGCTCGTCCTTTTCAAGATGCCACTGTTCCAAGAAAAGGTTTGTCTTTTCATCACCATCTCTGTATTTTCTTGATGTGGGATTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

243

Amino Acids

26.32

Weight (kDa)

9.24

Isoelectric Point (pI)

69.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	66
AciI	CCGC	5 cut(s)	173, 182, 413, 626, 629
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	84, 678
AflIII	ACRYGT	1 cut(s)	549
AgeI	ACCGGT	2 cut(s)	230, 397
AgsI	TTSAA	6 cut(s)	135, 329, 379, 442, 539, 657
AhlI	ACTAGT	3 cut(s)	286, 428, 434
AluBI	AGCT	4 cut(s)	13, 36, 114, 167
AluI	AGCT	4 cut(s)	13, 36, 114, 167
Alw21I	GWGCWC	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	2 cut(s)	82, 95
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	3 cut(s)	41, 74, 149
ApoI	RAATTY	1 cut(s)	475
AsiGI	ACCGGT	2 cut(s)	230, 397
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	196, 687
AsuII	TTCGAA	2 cut(s)	247, 473
AvaII	GGWCC	1 cut(s)	254
BamHI	GGATCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	4 cut(s)	114, 306, 353, 552
Bbv12I	GWGCWC	1 cut(s)	15
BbvI	GCAGC	3 cut(s)	53, 86, 136
BccI	CCATC	2 cut(s)	13, 706
BceAI	ACGGC	2 cut(s)	446, 511
BcoDI	GTCTC	1 cut(s)	494
BcuI	ACTAGT	3 cut(s)	286, 428, 434
BfaI	CTAG	4 cut(s)	287, 429, 435, 489
BisI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
BlsI	GCNGC	5 cut(s)	43, 76, 151, 628, 631
BmcAI	AGTACT	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	89
BmsI	GCATC	2 cut(s)	613, 650
BpiI	GAAGAC	4 cut(s)	114, 306, 353, 552
Bpu14I	TTCGAA	2 cut(s)	247, 473
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	3 cut(s)	230, 397, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 678
Bse118I	RCCGGY	3 cut(s)	230, 397, 457
Bse1I	ACTGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	2 cut(s)	84, 678
BseMII	CTCAG	1 cut(s)	649
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	53, 86, 136
BseYI	CCCAGC	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	461
BshTI	ACCGGT	2 cut(s)	230, 397
BsiEI	CGRYCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	231, 398, 458, 531
BslFI	GGGAC	2 cut(s)	375, 506
BslI	CCNNNNNNNGG	2 cut(s)	84, 678
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	2 cut(s)	375, 506
BsnI	GGCC	1 cut(s)	461
Bsp119I	TTCGAA	2 cut(s)	247, 473
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	5 cut(s)	173, 182, 413, 626, 629
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	648
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	82, 95
BspT104I	TTCGAA	2 cut(s)	247, 473
BsrFI	RCCGGY	3 cut(s)	230, 397, 457
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	3 cut(s)	230, 397, 457
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	87
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	3 cut(s)	48, 244, 585
BstACI	GRCGYC	1 cut(s)	63
BstBI	TTCGAA	2 cut(s)	247, 473
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	462
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
BstNSI	RCATGY	1 cut(s)	553
BstV1I	GCAGC	3 cut(s)	53, 86, 136
BstV2I	GAAGAC	4 cut(s)	114, 306, 353, 552
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	561, 664
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	15
Cfr10I	RCCGGY	3 cut(s)	230, 397, 457
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	432
CspAI	ACCGGT	2 cut(s)	230, 397
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	3 cut(s)	16, 178, 550
CviQI	GTAC	1 cut(s)	432
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	1 cut(s)	459
EagI	CGGCCG	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	48, 244, 585
EarI	CTCTTC	3 cut(s)	48, 244, 585
Ecl136II	GAGCTC	1 cut(s)	13
EclXI	CGGCCG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	3 cut(s)	19, 181, 553
FaiI	YATR	7 cut(s)	17, 110, 155, 179, 344, 485, 551
FaqI	GGGAC	2 cut(s)	375, 506
FatI	CATG	3 cut(s)	15, 177, 549
Fnu4HI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
FspBI	CTAG	4 cut(s)	287, 429, 435, 489
GluI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	4 cut(s)	231, 398, 458, 531
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	19, 181, 553
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	112
HpaII	CCGG	4 cut(s)	231, 398, 458, 531
HphI	GGTGA	2 cut(s)	196, 687
Hpy166II	GTNNAC	3 cut(s)	31, 275, 410
Hpy188III	TCNNGA	6 cut(s)	16, 91, 196, 329, 657, 713
Hpy8I	GTNNAC	3 cut(s)	31, 275, 410
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	2 cut(s)	193, 594
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	41, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	19, 181, 553
KroI	GCCGGC	1 cut(s)	457
KroNI	GCCGGC	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	53, 86, 136
LweI	GCATC	2 cut(s)	613, 650
MaeI	CTAG	4 cut(s)	287, 429, 435, 489
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	233, 259
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MfeI	CAATTG	1 cut(s)	539
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	442, 475, 539
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	9 cut(s)	88, 215, 245, 325, 376, 426, 585, 588, 594
MroNI	GCCGGC	1 cut(s)	457
MseI	TTAA	2 cut(s)	189, 596
MslI	CAYNNNNRTG	2 cut(s)	182, 554
MspI	CCGG	4 cut(s)	231, 398, 458, 531
MunI	CAATTG	1 cut(s)	539
MwoI	GCNNNNNNNGC	4 cut(s)	80, 179, 412, 458
NaeI	GCCGGC	1 cut(s)	459
NdeII	GATC	1 cut(s)	87
NgoMIV	GCCGGC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	19, 181, 553
NlaIV	GGNNCC	1 cut(s)	89
NmeAIII	GCCGAG	2 cut(s)	59, 428
NmuCI	GTSAC	2 cut(s)	233, 259
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	2 cut(s)	247, 473
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	1 cut(s)	549
PdiI	GCCGGC	1 cut(s)	459
PinAI	ACCGGT	2 cut(s)	230, 397
PkrI	GCNGC	5 cut(s)	43, 76, 151, 628, 631
PpuMI	RGGWCCY	1 cut(s)	254
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	254
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	87
RsaI	GTAC	1 cut(s)	433
RsaNI	GTAC	1 cut(s)	432
RseI	CAYNNNNRTG	2 cut(s)	182, 554
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	189, 596
SatI	GCNGC	5 cut(s)	42, 75, 150, 627, 630
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	433
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	613, 650
SfuI	TTCGAA	2 cut(s)	247, 473
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	182, 554
SpeI	ACTAGT	3 cut(s)	286, 428, 434
Sse9I	AATT	3 cut(s)	442, 475, 539
SsiI	CCGC	5 cut(s)	173, 182, 413, 626, 629
SspMI	CTAG	4 cut(s)	287, 429, 435, 489
SstI	GAGCTC	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	247, 473, 521
TasI	AATT	3 cut(s)	442, 475, 539
TatI	WGTACW	1 cut(s)	431
TauI	GCSGC	2 cut(s)	629, 632
Tru1I	TTAA	2 cut(s)	189, 596
Tru9I	TTAA	2 cut(s)	189, 596
TscAI	CASTG	2 cut(s)	561, 671
TseFI	GTSAC	2 cut(s)	233, 259
TseI	GCWGC	3 cut(s)	41, 74, 149
Tsp45I	GTSAC	2 cut(s)	233, 259
TspDTI	ATGAA	5 cut(s)	97, 198, 306, 359, 681
TspRI	CASTG	2 cut(s)	561, 671
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	1 cut(s)	553
XspI	CTAG	4 cut(s)	287, 429, 435, 489
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.