Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009047

Physical Location & Seq

Genomic Coordinates Reverse (-)

5334685 .. 5336858

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1078200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCCCTGGAACTAATGATGGGATTGATTGACAGTTTTGCAGCGAAGGGGGAGGAGAATGCCGTGAAGGAGGCGGCCTCCGCCGGAATCCAGAGCGTCGAGAAGTTTATCAGCTTGATTTCGCAACACCACCACCAGTCCTTGTCGTCGAACACGGAAGATGCAACGGAGTATAAAGCGGTGGCGGACATGGCAGTGACCAAGTTCAGGAAGGTCATTTCGTTGTTGGACAAAGGAAGAACCGGCCACGCCCGGTTCCGGAAAGCTCCGGTAACCCAAATTCCGACACCTTCAATTTCAGAACCCCATGATCAAGAAACAGAGCAACCTTCTGTTTTCAGAACAGAACAATCTTCTGCTTTCAAGGTTTACTGTCCGACGCCGGTGGTTTACCTTCCGCCGCTGCCGCAAAATCCTCATCCAAAAACCACTCCGGTTATGCTGACAAAAGGTATTGGGTGCGCTGAGAGAAAGATGGATTCTGCCGCTGCTGCTACCATCAGTTTCTCGCCTTCGGCACCCAAAACTGCCGCGAACTCGTTCATTTCTTCTTTAACAGCTGGGGACGCTGCTGAGCAATCGATCTCTTCTGGGTTTCAATTCACAAACATGTCGCAGTCGTCTTCCGGTAGGCCGCCGCTGTCTTCGTCGTCGTTGAAGAGGAAGTGCAGCTCCGTCGACAATGTTTCTCGTCTCCGGTGCGGCTCTACTACGGGGCGTTGCCACTGTTCGAAGACAAGGAAACTTAAAGTGAAAAGAGTTATTAGGGTTCCTGCAATTAGTATGAAATTGGCTGATATTCCACCTGATGATTATTCTTGGAGAAAGTACGGTCAAAAACCCATCAAGGGTTCCCCTTATCCAAGAGGGTATTACAAGTGTAGCAGCGAGAGAGGTTGCCTTGCACGCAAGCACGTGGAGCGCGCTGTAGACGATCCCACCATGCTGATCGTGACCTACGAAGGCGATCACAATCACTCCCTCTGCGTTACCGATCCAACGGCCACCCTTATCCTCGAATCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

343

Amino Acids

37.21

Weight (kDa)

9.26

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	220 - 266	2.1e-16	Plant zinc cluster domain
WRKY	PF03106	270 - 326	1.2e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24240 AT4G24240
fragaria_vesca	FvH4_2g33920 FvH4_2g33920 FvH4_2g33920 FvH4_2g33920
malus_domestica	MD08G1094900.v1.1 MD15G1078200.v1.1
prunus_persica	Prupe.1G431100_v2.0.a1 Prupe.1G431100_v2.0.a1
pyrus_communis	pycom08g07690 pycom15g07300
rosa_chinensis	RchiOBHm_Chr6g0308491
rosa_laevigata	RLG00000010638
rosa_roxburghii	Rroxscaffold_7G00160080
rosa_rugosa	Rorug06G0367200
rosa_samantha	Rh5DG522200 Rh6AG477100 Rh6BG487300 Rh6CG492300 Rh6DG478400
rosa_wichuraiana	Rw6G041610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	2 cut(s)	678, 930
AccII	CGCG	2 cut(s)	533, 924
AccIII	TCCGGA	1 cut(s)	258
AclWI	GGATC	2 cut(s)	929, 989
AcoI	YGGCCR	2 cut(s)	244, 1002
AcsI	RAATTY	1 cut(s)	279
AcvI	CACGTG	1 cut(s)	916
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	1 cut(s)	830
AfiI	CCNNNNNNNGG	3 cut(s)	207, 258, 848
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	4 cut(s)	294, 364, 599, 658
AjnI	CCWGG	1 cut(s)	6
AluBI	AGCT	4 cut(s)	114, 266, 560, 672
AluI	AGCT	4 cut(s)	114, 266, 560, 672
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	2 cut(s)	929, 989
Aor13HI	TCCGGA	1 cut(s)	258
AoxI	GGCC	5 cut(s)	3, 75, 244, 632, 1002
ApeKI	GCWGC	7 cut(s)	41, 403, 488, 491, 569, 669, 885
ApoI	RAATTY	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	539
AspLEI	GCGC	3 cut(s)	464, 924, 926
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	731
BanI	GGYRCC	1 cut(s)	517
BbrPI	CACGTG	1 cut(s)	916
BbsI	GAAGAC	3 cut(s)	615, 636, 740
BbvI	GCAGC	7 cut(s)	53, 390, 475, 478, 556, 681, 897
BccI	CCATC	4 cut(s)	13, 469, 506, 851
BceAI	ACGGC	2 cut(s)	47, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	658, 692
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	927
BlpI	GCTNAGC	1 cut(s)	573
Bme1390I	CCNGG	2 cut(s)	8, 253
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	257, 519, 771, 853
BmrFI	CCNGG	2 cut(s)	8, 253
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	3 cut(s)	615, 636, 740
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bpu1102I	GCTNAGC	1 cut(s)	573
Bpu14I	TTCGAA	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	916
BsaBI	GATNNNNATC	1 cut(s)	972
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	5 cut(s)	258, 268, 433, 626, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	962, 992
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 258, 848
Bse118I	RCCGGY	2 cut(s)	242, 382
Bse1I	ACTGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	972
BseAI	TCCGGA	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	3 cut(s)	207, 258, 848
BseMII	CTCAG	2 cut(s)	456, 564
BseNI	ACTGG	1 cut(s)	136
BsePI	GCGCGC	1 cut(s)	922
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	7 cut(s)	53, 390, 475, 478, 556, 681, 897
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	533, 924
BshFI	GGCC	5 cut(s)	5, 77, 246, 634, 1004
BshNI	GGYRCC	1 cut(s)	517
BshVI	ATCGAT	1 cut(s)	581
BsiSI	CCGG	9 cut(s)	84, 243, 253, 259, 269, 383, 434, 627, 697
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	3 cut(s)	207, 258, 848
BsmAI	GTCTC	1 cut(s)	698
BsmBI	CGTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	5, 77, 246, 634, 1004
Bsp119I	TTCGAA	1 cut(s)	731
Bsp13I	TCCGGA	1 cut(s)	258
Bsp143I	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
Bsp1720I	GCTNAGC	1 cut(s)	573
BspANI	GGCC	5 cut(s)	5, 77, 246, 634, 1004
BspCNI	CTCAG	2 cut(s)	457, 565
BspDI	ATCGAT	1 cut(s)	581
BspEI	TCCGGA	1 cut(s)	258
BspFNI	CGCG	2 cut(s)	533, 924
BspLI	GGNNCC	4 cut(s)	257, 519, 771, 853
BspPI	GGATC	2 cut(s)	929, 989
BspT104I	TTCGAA	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	2 cut(s)	242, 382
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	2 cut(s)	242, 382
BssECI	CCNNGG	1 cut(s)	6
BssHII	GCGCGC	1 cut(s)	922
BssMI	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
BssNI	GRCGYC	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	8
Bst4CI	ACNGT	4 cut(s)	35, 374, 728, 833
Bst6I	CTCTTC	2 cut(s)	592, 653
BstACI	GRCGYC	1 cut(s)	380
BstBAI	YACGTR	1 cut(s)	916
BstBI	TTCGAA	1 cut(s)	731
BstC8I	GCNNGC	3 cut(s)	907, 911, 924
BstDEI	CTNAG	2 cut(s)	465, 573
BstEII	GGTNACC	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	2 cut(s)	533, 924
BstHHI	GCGC	3 cut(s)	464, 924, 926
BstKTI	GATC	6 cut(s)	313, 585, 937, 951, 970, 997
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 906, 919
BstNI	CCWGG	1 cut(s)	8
BstNSI	RCATGY	1 cut(s)	613
BstPI	GGTNACC	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	6, 251
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	2 cut(s)	533, 924
BstV1I	GCAGC	7 cut(s)	53, 390, 475, 478, 556, 681, 897
BstV2I	GAAGAC	3 cut(s)	615, 636, 740
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	5 cut(s)	5, 77, 246, 634, 1004
BsuTUI	ATCGAT	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	201, 724
Cac8I	GCNNGC	3 cut(s)	907, 911, 924
CfoI	GCGC	3 cut(s)	464, 924, 926
Cfr10I	RCCGGY	2 cut(s)	242, 382
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	581
CseI	GACGC	3 cut(s)	85, 388, 575
Csp6I	GTAC	1 cut(s)	829
CviAII	CATG	4 cut(s)	190, 308, 610, 943
CviQI	GTAC	1 cut(s)	829
DdeI	CTNAG	2 cut(s)	465, 573
DpnI	GATC	6 cut(s)	312, 584, 936, 950, 969, 996
DpnII	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
EaeI	YGGCCR	2 cut(s)	244, 1002
Eam1104I	CTCTTC	2 cut(s)	592, 653
EarI	CTCTTC	2 cut(s)	592, 653
EciI	GGCGGA	3 cut(s)	70, 200, 387
Eco72I	CACGTG	1 cut(s)	916
Eco91I	GGTNACC	1 cut(s)	271
EcoO65I	GGTNACC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	4 cut(s)	193, 311, 613, 946
FaiI	YATR	7 cut(s)	174, 191, 309, 440, 611, 785, 944
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	4 cut(s)	189, 307, 609, 942
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	678, 930
FokI	GGATG	1 cut(s)	405
GlaI	GCGC	3 cut(s)	463, 923, 925
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	5 cut(s)	5, 77, 246, 634, 1004
HapII	CCGG	9 cut(s)	84, 243, 253, 259, 269, 383, 434, 627, 697
HgaI	GACGC	3 cut(s)	85, 388, 575
HhaI	GCGC	3 cut(s)	464, 924, 926
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	4 cut(s)	193, 311, 613, 946
Hin6I	GCGC	3 cut(s)	462, 922, 924
HinP1I	GCGC	3 cut(s)	462, 922, 924
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	3 cut(s)	87, 479, 1019
HpaII	CCGG	9 cut(s)	84, 243, 253, 259, 269, 383, 434, 627, 697
Hpy166II	GTNNAC	4 cut(s)	370, 391, 679, 931
Hpy188I	TCNGA	4 cut(s)	285, 301, 341, 378
Hpy188III	TCNNGA	7 cut(s)	91, 100, 208, 259, 314, 952, 1026
Hpy8I	GTNNAC	4 cut(s)	370, 391, 679, 931
Hpy99I	CGWCG	6 cut(s)	101, 151, 382, 652, 655, 680
HpyAV	CCTTC	8 cut(s)	40, 61, 205, 300, 339, 404, 522, 956
HpyCH4III	ACNGT	4 cut(s)	35, 374, 728, 833
HpyCH4IV	ACGT	1 cut(s)	915
HpyCH4V	TGCA	5 cut(s)	41, 164, 669, 776, 905
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 906, 919
HpyF3I	CTNAG	2 cut(s)	465, 573
HpySE526I	ACGT	1 cut(s)	915
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	4 cut(s)	193, 311, 613, 946
HspAI	GCGC	3 cut(s)	462, 922, 924
Kpn2I	TCCGGA	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
LmnI	GCTCC	3 cut(s)	271, 677, 919
Lsp1109I	GCAGC	7 cut(s)	53, 390, 475, 478, 556, 681, 897
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	915
MaeIII	GTNAC	4 cut(s)	196, 271, 952, 988
MalI	GATC	6 cut(s)	312, 584, 936, 950, 969, 996
MboI	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
MboII	GAAGA	9 cut(s)	170, 249, 345, 540, 579, 615, 636, 670, 745
MluCI	AATT	5 cut(s)	279, 294, 599, 777, 788
MmeI	TCCRAC	4 cut(s)	207, 308, 401, 1022
MnlI	CCTC	9 cut(s)	46, 64, 88, 426, 654, 860, 887, 992, 1025
MroI	TCCGGA	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	2 cut(s)	554, 747
MslI	CAYNNNNRTG	2 cut(s)	194, 608
MspA1I	CMGCKG	4 cut(s)	403, 488, 560, 640
MspI	CCGG	9 cut(s)	84, 243, 253, 259, 269, 383, 434, 627, 697
MspR9I	CCNGG	2 cut(s)	8, 253
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	8
MvnI	CGCG	2 cut(s)	533, 924
MwoI	GCNNNNNNNGC	7 cut(s)	80, 191, 406, 491, 566, 906, 919
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
NlaIII	CATG	4 cut(s)	193, 311, 613, 946
NlaIV	GGNNCC	4 cut(s)	257, 519, 771, 853
NmuCI	GTSAC	2 cut(s)	196, 952
NspI	RCATGY	1 cut(s)	613
NspV	TTCGAA	1 cut(s)	731
PauI	GCGCGC	1 cut(s)	922
PciI	ACATGT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	3 cut(s)	87, 479, 1019
PmaCI	CACGTG	1 cut(s)	916
PmlI	CACGTG	1 cut(s)	916
Ppu21I	YACGTR	1 cut(s)	916
PscI	ACATGT	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	6
PspCI	CACGTG	1 cut(s)	916
PspEI	GGTNACC	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	6
PspN4I	GGNNCC	4 cut(s)	257, 519, 771, 853
PspPI	GGNCC	1 cut(s)	4
PteI	GCGCGC	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	830
RsaNI	GTAC	1 cut(s)	829
RseI	CAYNNNNRTG	2 cut(s)	194, 608
SalI	GTCGAC	1 cut(s)	677
SaqAI	TTAA	2 cut(s)	554, 747
Sau3AI	GATC	6 cut(s)	310, 582, 934, 948, 967, 994
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 253
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	1 cut(s)	731
SgrAI	CRCCGGYG	1 cut(s)	382
SmiMI	CAYNNNNRTG	2 cut(s)	194, 608
Sse9I	AATT	5 cut(s)	279, 294, 599, 777, 788
StyD4I	CCNGG	2 cut(s)	6, 251
TaaI	ACNGT	4 cut(s)	35, 374, 728, 833
TaiI	ACGT	1 cut(s)	918
TaqI	TCGA	6 cut(s)	99, 149, 581, 678, 731, 1017
TasI	AATT	5 cut(s)	279, 294, 599, 777, 788
TauI	GCSGC	8 cut(s)	77, 403, 409, 488, 533, 637, 640, 705
TfiI	GAWTC	3 cut(s)	87, 479, 1019
Tru1I	TTAA	2 cut(s)	554, 747
Tru9I	TTAA	2 cut(s)	554, 747
TscAI	CASTG	2 cut(s)	201, 731
TseFI	GTSAC	2 cut(s)	196, 952
TseI	GCWGC	7 cut(s)	41, 403, 488, 491, 569, 669, 885
Tsp45I	GTSAC	2 cut(s)	196, 952
TspDTI	ATGAA	2 cut(s)	532, 800
TspGWI	ACGGA	3 cut(s)	170, 182, 664
TspRI	CASTG	2 cut(s)	201, 731
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	613
XmiI	GTMKAC	2 cut(s)	678, 930
XmnI	GAANNNNTTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.