AT4G24340
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006017
Physical Location & Seq
Forward (+)
12607371 .. 12609252
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24340.1

Sequence Viewer

Length: 1017 bp
ATGGCTTCCATGGATCACAATCATTTTCTTTTTCCTCTCCTCTTCATCATCATCATCTCTTCCTTGCACGTTTTGCGTGCTTCGACCACACCTTCACACTCACACAAACTAAAATCCGCCACTACCATTAGAAAAATCAACCGTAGAGGACCTTACATTGGCCTTGTGACGGTCTTTGAGACCGAAGAAGATGCTTTTCTCGGCAGTGTTGATTTCAGACTCGATCCTACGCATCCTTTCCTCGATCTCTCTGGAAGACGTTTTCGTATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTCAGATGTGGGATAGGAATGGTGAACGCAGCAGCAGCAACACAACAAATGATAGATGTGTTCAGTGTGAAAGGGATTGTGCATTTTGGGATTGCTGGAAATATAAACAACTCGATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATCACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGGCAAAGCAAAAGGAAATGAGGATGTAGCGTACTTAGATGTCGGGAACTATAATGTTCCACAAGGAAACAATAAGTTAGGAACTATTGGATACAGTTACGAGGAATTATATTCAGTCAGTGGTCACATCAATTCACCAAAGAAAGTGTTTTGGATTAATACAACTCAAGAGTGGCTTCATCTTGCAGCTGATCTTGAGAAGATGGAGCTATTGCAGTGTGTGAATGCAAGTCTGTGTCTTCCAAATAAACCCAAAGTAGTAGTTGGATTAAAAGCAGCCACTGCTGACATATTTGTGGATAATGCAGCCTATAGAAATTTCTTATACGATACTTTTGGAGTTTCCTCCTCAGACATGGAGAGTTCTGCTGTGGCCATGACTTGCGTGTCAAATGGGTATCCCCTAATTGTGATAAGAGGATTATCAGATTTAGCAGGAGTAGGAGATAACACTGTTCGAAAGTTTGGATCTTTGGCTGCCACTAACACTGCCAAAGCTGTTTTAGAGTTCATTAAAAAGCTCCCACCGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

338

Amino Acids

36.89

Weight (kDa)

8.89

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 53 - 333 1.5e-37 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 868
AciI CCGC 1 cut(s) 117
AclWI GGATC 3 cut(s) 21, 218, 958
AcoI YGGCCR 1 cut(s) 855
AcsI RAATTY 1 cut(s) 799
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 158, 169
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 4 cut(s) 671, 691, 980, 1003
AluI AGCT 4 cut(s) 671, 691, 980, 1003
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 21, 218, 958
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 2 cut(s) 160, 855
ApeKI GCWGC 7 cut(s) 329, 332, 335, 668, 758, 788, 959
ApoI RAATTY 1 cut(s) 799
AseI ATTAAT 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 334, 609
AsuII TTCGAA 1 cut(s) 940
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 857
BbsI GAAGAC 2 cut(s) 262, 713
BbvI GCAGC 7 cut(s) 341, 344, 347, 680, 770, 800, 946
BccI CCATC 1 cut(s) 679
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 2 cut(s) 566, 891
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 793
BfuI GTATCC 2 cut(s) 566, 891
BisI GCNGC 7 cut(s) 330, 333, 336, 669, 759, 789, 960
BlsI GCNGC 7 cut(s) 331, 334, 337, 670, 760, 790, 961
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 3 cut(s) 181, 241, 444
BpiI GAAGAC 2 cut(s) 262, 713
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 940
BpuEI CTTGAG 2 cut(s) 633, 698
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 169
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 3 cut(s) 232, 435, 511
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 158, 169
BseMII CTCAG 1 cut(s) 846
BseRI GAGGAG 2 cut(s) 29, 820
BseXI GCAGC 7 cut(s) 341, 344, 347, 680, 770, 800, 946
BshFI GGCC 2 cut(s) 162, 857
BslI CCNNNNNNNGG 2 cut(s) 158, 169
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 460, 712
BsnI GGCC 2 cut(s) 162, 857
Bso31I GGTCTC 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 940
Bsp143I GATC 5 cut(s) 13, 223, 244, 673, 950
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 1 cut(s) 117
BspANI GGCC 2 cut(s) 162, 857
BspCNI CTCAG 1 cut(s) 845
BspPI GGATC 3 cut(s) 21, 218, 958
BspT104I TTCGAA 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 173
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 5 cut(s) 13, 223, 244, 673, 950
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 143, 172, 578, 937, 1011
Bst6I CTCTTC 2 cut(s) 47, 64
BstAPI GCANNNNNTGC 2 cut(s) 73, 764
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 2 cut(s) 78, 460
BstDEI CTNAG 3 cut(s) 441, 517, 832
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 3 cut(s) 232, 435, 511
BstKTI GATC 5 cut(s) 16, 226, 247, 676, 953
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 5 cut(s) 13, 223, 244, 673, 950
BstMWI GCNNNNNNNGC 3 cut(s) 73, 335, 764
BstNI CCWGG 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 793
BstV1I GCAGC 7 cut(s) 341, 344, 347, 680, 770, 800, 946
BstV2I GAAGAC 2 cut(s) 262, 713
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BsuI GTATCC 2 cut(s) 566, 891
BsuRI GGCC 2 cut(s) 162, 857
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 3 cut(s) 232, 435, 511
BtsI GCAGTG 4 cut(s) 211, 704, 762, 969
BtsIMutI CAGTG 7 cut(s) 211, 370, 607, 704, 762, 933, 969
Cac8I GCNNGC 2 cut(s) 78, 460
CaiI CAGNNNCTG 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 514
CviAII CATG 4 cut(s) 10, 281, 838, 859
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 3 cut(s) 441, 517, 832
DpnI GATC 5 cut(s) 15, 225, 246, 675, 952
DpnII GATC 5 cut(s) 13, 223, 244, 673, 950
DrdI GACNNNNNNGTC 1 cut(s) 868
DseDI GACNNNNNNGTC 1 cut(s) 868
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 47, 64
EarI CTCTTC 2 cut(s) 47, 64
EciI GGCGGA 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 13, 284, 841, 862
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 4 cut(s) 9, 280, 837, 858
Fnu4HI GCNGC 7 cut(s) 330, 333, 336, 669, 759, 789, 960
FokI GGATG 3 cut(s) 219, 422, 518
Fsp4HI GCNGC 7 cut(s) 330, 333, 336, 669, 759, 789, 960
GluI GCNGC 7 cut(s) 330, 333, 336, 669, 759, 789, 960
HaeIII GGCC 2 cut(s) 162, 857
Hin1II CATG 4 cut(s) 13, 284, 841, 862
HinfI GANTC 3 cut(s) 219, 277, 478
HphI GGTGA 2 cut(s) 334, 609
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 218, 305, 835, 910
Hpy188III TCNNGA 5 cut(s) 252, 451, 526, 650, 677
Hpy8I GTNNAC 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 102, 283
HpyCH4III ACNGT 5 cut(s) 143, 172, 578, 937, 1011
HpyCH4IV ACGT 2 cut(s) 69, 259
HpyCH4V TGCA 6 cut(s) 67, 382, 668, 697, 710, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 335, 764
HpyF3I CTNAG 3 cut(s) 441, 517, 832
HpySE526I ACGT 2 cut(s) 69, 259
Hsp92II CATG 4 cut(s) 13, 284, 841, 862
Kzo9I GATC 5 cut(s) 13, 223, 244, 673, 950
LmnI GCTCC 2 cut(s) 688, 1008
LpnPI CCDG 6 cut(s) 237, 381, 444, 468, 495, 903
Lsp1109I GCAGC 7 cut(s) 341, 344, 347, 680, 770, 800, 946
LweI GCATC 3 cut(s) 181, 241, 444
MaeII ACGT 2 cut(s) 69, 259
MaeIII GTNAC 3 cut(s) 166, 578, 605
MalI GATC 5 cut(s) 15, 225, 246, 675, 952
MboI GATC 5 cut(s) 13, 223, 244, 673, 950
MboII GAAGA 8 cut(s) 34, 51, 197, 200, 267, 286, 694, 713
MflI RGATCY 1 cut(s) 950
MlsI TGGCCA 1 cut(s) 857
MluCI AATT 4 cut(s) 587, 613, 799, 888
MluNI TGGCCA 1 cut(s) 857
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 9 cut(s) 45, 50, 140, 251, 496, 577, 838, 841, 893
Mox20I TGGCCA 1 cut(s) 857
MscI TGGCCA 1 cut(s) 857
MseI TTAA 3 cut(s) 639, 752, 996
MslI CAYNNNNRTG 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 857
MspA1I CMGCKG 1 cut(s) 671
MspR9I CCNGG 1 cut(s) 483
Mva1269I GAATGC 2 cut(s) 460, 712
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 73, 335, 764
NcoI CCATGG 1 cut(s) 9
NdeII GATC 5 cut(s) 13, 223, 244, 673, 950
NlaIII CATG 4 cut(s) 13, 284, 841, 862
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 166, 605
NspV TTCGAA 1 cut(s) 940
PctI GAATGC 2 cut(s) 460, 712
PfeI GAWTC 2 cut(s) 277, 478
PkrI GCNGC 7 cut(s) 331, 334, 337, 670, 760, 790, 961
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 149
PshBI ATTAAT 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 149
PspPPI RGGWCCY 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 1 cut(s) 950
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 776
SaqAI TTAA 3 cut(s) 639, 752, 996
SatI GCNGC 7 cut(s) 330, 333, 336, 669, 759, 789, 960
Sau3AI GATC 5 cut(s) 13, 223, 244, 673, 950
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 483
SetI ASST 9 cut(s) 72, 94, 154, 262, 294, 673, 693, 982, 1005
SfaNI GCATC 3 cut(s) 181, 241, 444
SfcI CTRYAG 1 cut(s) 793
SfuI TTCGAA 1 cut(s) 940
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 2 cut(s) 648, 677
SmoI CTYRAG 2 cut(s) 648, 677
Sse9I AATT 4 cut(s) 587, 613, 799, 888
SsiI CCGC 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 5 cut(s) 143, 172, 578, 937, 1011
TaiI ACGT 2 cut(s) 72, 262
TaqI TCGA 5 cut(s) 83, 222, 243, 413, 940
TaqII GACCGA 1 cut(s) 197
TasI AATT 4 cut(s) 587, 613, 799, 888
TfiI GAWTC 2 cut(s) 277, 478
Tru1I TTAA 3 cut(s) 639, 752, 996
Tru9I TTAA 3 cut(s) 639, 752, 996
TscAI CASTG 7 cut(s) 211, 370, 607, 704, 769, 940, 976
TseFI GTSAC 2 cut(s) 166, 605
TseI GCWGC 7 cut(s) 329, 332, 335, 668, 758, 788, 959
Tsp45I GTSAC 2 cut(s) 166, 605
TspDTI ATGAA 4 cut(s) 34, 269, 650, 982
TspRI CASTG 7 cut(s) 211, 370, 607, 704, 769, 940, 976
VpaK11BI GGWCC 1 cut(s) 149
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.