Rh1CG283900
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006017
Physical Location & Seq
Forward (+)
55498269 .. 55502213
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG283900.1

Sequence Viewer

Length: 960 bp
ATGGAGACGACCATGGCTCCAAAACAAGTTGCAGAATGCTTGCTGACACTGGTTATGATCAATCTACTAGTTGTTTCTTCATTTTCTTTGCCACTCAATAGGAGATCTTTGAAGCTCATCCAAGAAATAAACCAGAAGGGGCCTTACATTGGCCTCATCACAGTCTATCCACCAGAAGAGGCTGCTTTTTTCCACACCGGGGCTTTTAAGCCTAATCCAAAGCATCCTTTTCTGGATTTCTCAGGTAGGCGATTCCGGGTGGGAAAGATCCATGATAAGAAAGTCGTCTATGTGAGATGTGGAGTTGGAATGGTGAATGCTGCTACAGCAACACAGCAAATGCTGGATCTATTTGACGTTGTCGGAATTGTTCATTTTGGCATAGCTGGCAGTGCCAATATCTCTATGTCTATTGGTGATGTTACCATTCCTCAACAGTTTGCTCACACTGGCATATGGGATTGGGTGAACCCAAATGGAACTTTGGATCTGGAAGATGTTGCACAATTAGACTTTAAAGTATACAATGAACCAAAAGGAGGAGAGAACCTGTTGGGACACATTGGATTTAGAAATGAACGGTTCTATTCTGAGTCCGGTAATCCAAATACTGCTCGGCTGTTGTTTTGGGCAAAGAGTACTCGAAAGTGGCTTCAGGTTGCTGCTCATTTGGAGGGAGTCGAACTGGTGCAATGTGTGAATTCCAGTATGTGTCTGCCACACAAGCCCAAGCTAGTTGTTGGTCTTAGGGGATCAACAGGCAACACTTTTGTGGACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTCATGTTTCCTCAGTGGACATGGAAAGCTCGGCTGTAGTAATGGTTAGTATCCAATTGCTGAACCGATCGTTTCCCCCATTTTTGTCTAAAACTGCTAATATAACTGGTGGTTGTGGCAGACAAGCTTGTCAAATGGCTTCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

319

Amino Acids

35.27

Weight (kDa)

9.01

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 50 - 286 3.3e-24 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 939
AccI GTMKAC 1 cut(s) 522
AclWI GGATC 4 cut(s) 262, 354, 495, 760
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 3 cut(s) 149, 199, 539
AgsI TTSAA 2 cut(s) 112, 806
AhlI ACTAGT 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 6 cut(s) 115, 386, 733, 785, 840, 938
AluI AGCT 6 cut(s) 115, 386, 733, 785, 840, 938
AlwI GGATC 4 cut(s) 262, 354, 495, 760
AoxI GGCC 2 cut(s) 140, 151
ApeKI GCWGC 4 cut(s) 182, 320, 662, 782
ApoI RAATTY 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 3 cut(s) 199, 257, 955
AsuHPI GGTGA 3 cut(s) 325, 428, 478
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbvI GCAGC 4 cut(s) 169, 307, 649, 794
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 3 cut(s) 199, 257, 955
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 2 cut(s) 68, 734
BfmI CTRYAG 2 cut(s) 324, 846
BfuI GTATCC 1 cut(s) 872
BglII AGATCT 1 cut(s) 104
BisI GCNGC 4 cut(s) 183, 321, 663, 783
BlsI GCNGC 4 cut(s) 184, 322, 664, 784
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 3 cut(s) 199, 257, 955
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 18, 141
BmrFI CCNGG 3 cut(s) 199, 257, 955
BmsI GCATC 1 cut(s) 232
BpuMI CCSGG 3 cut(s) 199, 257, 955
BsaJI CCNNGG 2 cut(s) 12, 198
BsaWI WCCGGW 1 cut(s) 596
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 199, 539
Bse1I ACTGG 5 cut(s) 54, 454, 690, 705, 922
Bse3DI GCAATG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 12, 198
BseGI GGATG 2 cut(s) 117, 223
BseLI CCNNNNNNNGG 3 cut(s) 149, 199, 539
BseMI GCAATG 1 cut(s) 698
BseMII CTCAG 3 cut(s) 255, 582, 837
BseNI ACTGG 5 cut(s) 54, 454, 690, 705, 922
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 4 cut(s) 169, 307, 649, 794
Bsh1285I CGRYCG 1 cut(s) 881
BshFI GGCC 2 cut(s) 142, 153
BsiEI CGRYCG 1 cut(s) 881
BsiSI CCGG 4 cut(s) 198, 256, 597, 955
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 3 cut(s) 149, 199, 539
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 2 cut(s) 41, 322
BsnI GGCC 2 cut(s) 142, 153
Bsp143I GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 2 cut(s) 142, 153
BspCNI CTCAG 3 cut(s) 254, 583, 836
BspLI GGNNCC 2 cut(s) 18, 141
BspPI GGATC 4 cut(s) 262, 354, 495, 760
BsrDI GCAATG 1 cut(s) 698
BsrI ACTGG 5 cut(s) 54, 454, 690, 705, 922
BssECI CCNNGG 2 cut(s) 12, 198
BssMI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
BssNAI GTATAC 1 cut(s) 523
BssT1I CCWWGG 1 cut(s) 12
Bst1107I GTATAC 1 cut(s) 523
Bst4CI ACNGT 3 cut(s) 163, 438, 582
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 41, 388
BstDEI CTNAG 4 cut(s) 241, 591, 746, 823
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 117, 223
BstKTI GATC 7 cut(s) 60, 107, 270, 349, 490, 755, 881
BstMBI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
BstMCI CGRYCG 1 cut(s) 881
BstMWI GCNNNNNNNGC 4 cut(s) 326, 387, 392, 724
BstSCI CCNGG 3 cut(s) 197, 255, 953
BstSFI CTRYAG 2 cut(s) 324, 846
BstV1I GCAGC 4 cut(s) 169, 307, 649, 794
BstX2I RGATCY 4 cut(s) 104, 267, 346, 487
BstYI RGATCY 4 cut(s) 104, 267, 346, 487
BstZ17I GTATAC 1 cut(s) 523
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 2 cut(s) 142, 153
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 117, 223
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 4 cut(s) 47, 397, 447, 831
Cac8I GCNNGC 2 cut(s) 41, 388
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 639
CviAII CATG 4 cut(s) 13, 272, 815, 832
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 4 cut(s) 241, 591, 746, 823
DpnI GATC 7 cut(s) 59, 106, 269, 348, 489, 754, 880
DpnII GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
DraI TTTAAA 1 cut(s) 517
DrdI GACNNNNNNGTC 1 cut(s) 939
DseDI GACNNNNNNGTC 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 275, 818, 835
FaqI GGGAC 1 cut(s) 570
FatI CATG 4 cut(s) 12, 271, 814, 831
FauNDI CATATG 1 cut(s) 455
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 183, 321, 663, 783
FokI GGATG 2 cut(s) 104, 210
Fsp4HI GCNGC 4 cut(s) 183, 321, 663, 783
FspBI CTAG 2 cut(s) 68, 734
GluI GCNGC 4 cut(s) 183, 321, 663, 783
HaeIII GGCC 2 cut(s) 142, 153
HapII CCGG 4 cut(s) 198, 256, 597, 955
Hin1II CATG 4 cut(s) 16, 275, 818, 835
HindIII AAGCTT 1 cut(s) 936
HinfI GANTC 3 cut(s) 252, 593, 678
HpaII CCGG 4 cut(s) 198, 256, 597, 955
HphI GGTGA 3 cut(s) 325, 428, 478
Hpy166II GTNNAC 4 cut(s) 469, 523, 775, 829
Hpy188I TCNGA 2 cut(s) 365, 592
Hpy188III TCNNGA 2 cut(s) 233, 491
Hpy8I GTNNAC 4 cut(s) 469, 523, 775, 829
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 163, 438, 582
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 4 cut(s) 32, 503, 691, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 387, 392, 724
HpyF3I CTNAG 4 cut(s) 241, 591, 746, 823
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 4 cut(s) 16, 275, 818, 835
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 4 cut(s) 169, 307, 649, 794
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 68, 734
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 421
MalI GATC 7 cut(s) 59, 106, 269, 348, 489, 754, 880
MboI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
MboII GAAGA 3 cut(s) 69, 188, 506
MfeI CAATTG 1 cut(s) 866
MflI RGATCY 4 cut(s) 104, 267, 346, 487
MluCI AATT 4 cut(s) 366, 506, 700, 866
MlyI GAGTC 2 cut(s) 602, 687
MmeI TCCRAC 2 cut(s) 286, 343
MnlI CCTC 6 cut(s) 164, 172, 441, 533, 667, 832
MseI TTAA 2 cut(s) 207, 516
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 4 cut(s) 198, 256, 597, 955
MspR9I CCNGG 3 cut(s) 199, 257, 955
MunI CAATTG 1 cut(s) 866
Mva1269I GAATGC 2 cut(s) 41, 322
MwoI GCNNNNNNNGC 4 cut(s) 326, 387, 392, 724
NciI CCSGG 3 cut(s) 199, 257, 955
NcoI CCATGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 455
NdeII GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
NlaIII CATG 4 cut(s) 16, 275, 818, 835
NlaIV GGNNCC 2 cut(s) 18, 141
NmeAIII GCCGAG 2 cut(s) 595, 821
OliI CACNNNNGTG 1 cut(s) 770
PctI GAATGC 2 cut(s) 41, 322
PfeI GAWTC 1 cut(s) 252
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 4 cut(s) 184, 322, 664, 784
Ple19I CGATCG 1 cut(s) 881
PleI GAGTC 2 cut(s) 601, 686
PpsI GAGTC 2 cut(s) 601, 686
PspN4I GGNNCC 2 cut(s) 18, 141
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 4 cut(s) 104, 267, 346, 487
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 881
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 2 cut(s) 207, 516
SatI GCNGC 4 cut(s) 183, 321, 663, 783
Sau3AI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 878
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 2 cut(s) 602, 687
ScrFI CCNGG 3 cut(s) 199, 257, 955
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 324, 846
SmiMI CAYNNNNRTG 1 cut(s) 770
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 4 cut(s) 366, 506, 700, 866
SspMI CTAG 2 cut(s) 68, 734
StyD4I CCNGG 3 cut(s) 197, 255, 953
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 163, 438, 582
TaiI ACGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 643, 681
TasI AATT 4 cut(s) 366, 506, 700, 866
TatI WGTACW 1 cut(s) 638
TfiI GAWTC 1 cut(s) 252
Tru1I TTAA 2 cut(s) 207, 516
Tru9I TTAA 2 cut(s) 207, 516
TscAI CASTG 4 cut(s) 54, 397, 454, 831
TseI GCWGC 4 cut(s) 182, 320, 662, 782
TspDTI ATGAA 5 cut(s) 69, 362, 543, 591, 803
TspRI CASTG 4 cut(s) 54, 397, 454, 831
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 1 cut(s) 700
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 2 cut(s) 68, 734
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.