Rh1CG284100
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006017
Physical Location & Seq
Forward (+)
55503775 .. 55504414
640 bp
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UTR
Exon/CDS
Intron
Rh1CG284100.1

Sequence Viewer

Length: 375 bp
ATGAATGGTTCTATTGTGATTCCGGGAATCGAACTGGTGCAATGTGTGAATTCGAGTTTGTGTCTACCACAGAAGCCCAAGTTAGTTGTTGGTCTGAGGGGATCAACAGGCAACACTTTTGTGGACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTCTTGTTTCCTCAGTGGACATGGAAAGCTCGGCTGTAGTAATGACAGGCTTGTCAAATGGCTTTCCGGTGATTGTGATCCGTGGGTTATCAAATTTAGCAGGAAGGCAAGCAGGAGAGAACCCGATTCAGACCTTTGGGCTTCTTGCAGCTATAAATGCTTGCAAAGTAGTTGTACAGTTAATCAAGGACCTGCCAGAGGCAGGATATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

124

Amino Acids

13.06

Weight (kDa)

7.69

Isoelectric Point (pI)

22.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 25 - 116 5.6e-11 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
Acc36I ACCTGC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 64
AclWI GGATC 2 cut(s) 109, 232
AcsI RAATTY 2 cut(s) 49, 253
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 358, 362
AgsI TTSAA 1 cut(s) 155
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 3 cut(s) 134, 189, 311
AluI AGCT 3 cut(s) 134, 189, 311
AlwI GGATC 2 cut(s) 109, 232
ApeKI GCWGC 2 cut(s) 131, 308
ApoI RAATTY 2 cut(s) 49, 253
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 143, 320
BcnI CCSGG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 360
BisI GCNGC 2 cut(s) 132, 309
BlsI GCNGC 2 cut(s) 133, 310
Bme1390I CCNGG 1 cut(s) 24
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 362
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 47
Bse8I GATNNNNATC 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 2 cut(s) 358, 362
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 86, 186
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 2 cut(s) 143, 320
BsiSI CCGG 2 cut(s) 23, 227
BslI CCNNNNNNNGG 2 cut(s) 358, 362
Bsp1407I TGTACA 1 cut(s) 334
Bsp143I GATC 2 cut(s) 101, 237
BspCNI CTCAG 2 cut(s) 87, 185
BspMI ACCTGC 1 cut(s) 360
BspPI GGATC 2 cut(s) 109, 232
BsrDI GCAATG 1 cut(s) 47
BsrGI TGTACA 1 cut(s) 334
BsrI ACTGG 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 101, 237
Bst4CI ACNGT 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 270, 322
BstDEI CTNAG 2 cut(s) 95, 172
BstDSI CCRYGG 1 cut(s) 241
BstENI CCTNNNNNAGG 1 cut(s) 356
BstKTI GATC 2 cut(s) 104, 240
BstMBI GATC 2 cut(s) 101, 237
BstMWI GCNNNNNNNGC 2 cut(s) 317, 368
BstSCI CCNGG 1 cut(s) 22
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 143, 320
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 270, 322
Cfr13I GGNCC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 335
CviAII CATG 1 cut(s) 181
CviJI RGCY 8 cut(s) 76, 134, 189, 194, 210, 222, 301, 311
CviKI_1 RGCY 8 cut(s) 76, 134, 189, 194, 210, 222, 301, 311
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 2 cut(s) 95, 172
DpnI GATC 2 cut(s) 103, 239
DpnII GATC 2 cut(s) 101, 237
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 349
EcoNI CCTNNNNNAGG 1 cut(s) 356
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 373
FaeI CATG 1 cut(s) 184
FaiI YATR 4 cut(s) 182, 314, 369, 373
FatI CATG 1 cut(s) 180
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 132, 309
Fsp4HI GCNGC 2 cut(s) 132, 309
GluI GCNGC 2 cut(s) 132, 309
HapII CCGG 2 cut(s) 23, 227
Hin1II CATG 1 cut(s) 184
HinfI GANTC 3 cut(s) 19, 27, 286
HpaII CCGG 2 cut(s) 23, 227
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 3 cut(s) 65, 124, 178
Hpy188I TCNGA 2 cut(s) 96, 291
Hpy8I GTNNAC 3 cut(s) 65, 124, 178
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 40, 131, 308, 324, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 368
HpyF3I CTNAG 2 cut(s) 95, 172
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 101, 237
Lsp1109I GCAGC 2 cut(s) 143, 320
MalI GATC 2 cut(s) 103, 239
MboI GATC 2 cut(s) 101, 237
MluCI AATT 2 cut(s) 49, 253
MnlI CCTC 3 cut(s) 90, 181, 352
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 1 cut(s) 341
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 2 cut(s) 23, 227
MspR9I CCNGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 317, 368
NciI CCSGG 1 cut(s) 24
NdeII GATC 2 cut(s) 101, 237
NlaIII CATG 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 170
NsiI ATGCAT 1 cut(s) 373
OliI CACNNNNGTG 1 cut(s) 119
PfeI GAWTC 3 cut(s) 19, 27, 286
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 2 cut(s) 133, 310
PpuMI RGGWCCY 1 cut(s) 349
Psp5II RGGWCCY 1 cut(s) 349
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 132, 309
Sau3AI GATC 2 cut(s) 101, 237
Sau96I GGNCC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 24
SetI ASST 5 cut(s) 136, 191, 296, 313, 354
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 2 cut(s) 49, 253
StyD4I CCNGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 30, 53
TasI AATT 2 cut(s) 49, 253
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 3 cut(s) 19, 27, 286
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 180
TseI GCWGC 2 cut(s) 131, 308
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 356
XapI RAATTY 2 cut(s) 49, 253
XmiI GTMKAC 1 cut(s) 64
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.