RLG00000027695
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006017
Physical Location & Seq
Reverse (-)
14080730 .. 14082275
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027695

Sequence Viewer

Length: 1014 bp
ATGGCTCCAAAACAAGTTGCAGAGTGCTTGCTGACTCTGGTTATGATCAATCTACTAGTTGTTTCTTCATTTTCTTTGCCACTAAATAGAAGAGCTTTGAAGCTCATCCAAGAAATAAACCGGAAGGGGCCTTACATTGGCCTCATCACAGTTTATCCACCAGAAGAGGCTGCTTTTTTCCACACCAGGGCTTTTAAGCCTAATCCAAAGCATCCTTCTCTGGATTTCTCAGGTAGGCGATTCCGGGTGGGAGAGATCCATGATAAGAAAGTCGTCTATGTGAGATGTGGAGTTGGAATGGTGAATGCTGCTGCAGCAACACAGCAAATGCTGGATCTATTTGACGTTGTCGGAATTGTTCACTTTGGCATATCTGGCAATGCCAATAACTCTATGTCTATTGGTGATGTTACAATTCCTCAACAGTTAGCTCACACTGGCATATGGGATTGGGTGAACCCAAATAGAACTTTGGATCTGGATGATGTTGCACAATTAGACTTTGAAGTATACAATGAACCAAAAGGAGGAGAGAACCTGTTGGGACACATTGGATTTCGAAATGAACAGTTCTATTCTGAGTCCGGTAATCCAAATATCGCTCGGCCATTGTTTTGGGCAAAGACTACTCGAAAGTGGCTTCAGGTTGCTGCCCATTTGGAGGGAATCGAACTGGTGCAATGTGTGAATTCGAGTTTGTGTCTGCCACAGAAGCCCAAGCTAGTTGTTGGTCTTAGGGGATCAACAGGCAATACTTTTGTGAACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTTGTGTTTCCTCAGTGGACATGGAAAGCTCGGCTGTAGTAATGACAAGCTTGTCAAATGGCTTCCCGGTGATTGTGATCAGAGGGTTATCAGATTTAGCAGGAAGGCAAGCAGGAGAGAACTCGATTCAGACCTTTGGGCCTCTGGCAGCTAGAAATGCTTGCAAAGTAGTTGTACAGTTCATCAAGGACCTGCCAGAGGCAGGGTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

338

Amino Acids

37.09

Weight (kDa)

8.49

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 46 - 329 2.8e-32 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 850
Acc36I ACCTGC 1 cut(s) 999
AccI GTMKAC 1 cut(s) 510
AclWI GGATC 4 cut(s) 250, 342, 483, 748
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 1 cut(s) 975
AfiI CCNNNNNNNGG 6 cut(s) 137, 187, 527, 661, 997, 1001
AgsI TTSAA 3 cut(s) 100, 506, 794
AhlI ACTAGT 1 cut(s) 55
AjnI CCWGG 1 cut(s) 185
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 8 cut(s) 95, 103, 431, 721, 773, 828, 849, 950
AluI AGCT 8 cut(s) 95, 103, 431, 721, 773, 828, 849, 950
AlwI GGATC 4 cut(s) 250, 342, 483, 748
AoxI GGCC 4 cut(s) 128, 139, 605, 938
ApeKI GCWGC 7 cut(s) 170, 308, 311, 314, 650, 770, 947
ApoI RAATTY 1 cut(s) 688
AspS9I GGNCC 3 cut(s) 128, 938, 988
AsuC2I CCSGG 2 cut(s) 245, 866
AsuHPI GGTGA 4 cut(s) 313, 416, 466, 880
AsuII TTCGAA 1 cut(s) 559
AvaII GGWCC 1 cut(s) 988
BarI GAAGNNNNNNTAC 2 cut(s) 116, 148
BbvI GCAGC 7 cut(s) 157, 295, 298, 326, 637, 782, 959
BciT130I CCWGG 1 cut(s) 187
BclI TGATCA 2 cut(s) 45, 876
BcnI CCSGG 2 cut(s) 245, 866
BcuI ACTAGT 1 cut(s) 55
BfaI CTAG 3 cut(s) 56, 722, 951
BfmI CTRYAG 2 cut(s) 312, 834
BfuAI ACCTGC 1 cut(s) 999
BisI GCNGC 7 cut(s) 171, 309, 312, 315, 651, 771, 948
BlsI GCNGC 7 cut(s) 172, 310, 313, 316, 652, 772, 949
Bme1390I CCNGG 3 cut(s) 187, 245, 866
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 3 cut(s) 128, 938, 988
BmiI GGNNCC 2 cut(s) 6, 129
BmrFI CCNGG 3 cut(s) 187, 245, 866
BmsI GCATC 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 559
BpuMI CCSGG 2 cut(s) 245, 866
BsaBI GATNNNNATC 1 cut(s) 875
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 2 cut(s) 120, 584
Bsc4I CCNNNNNNNGG 6 cut(s) 137, 187, 527, 661, 997, 1001
Bse1I ACTGG 2 cut(s) 442, 678
Bse3DI GCAATG 2 cut(s) 385, 686
Bse8I GATNNNNATC 1 cut(s) 875
BseBI CCWGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 105, 211, 487
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 6 cut(s) 137, 187, 527, 661, 997, 1001
BseMI GCAATG 2 cut(s) 385, 686
BseMII CTCAG 3 cut(s) 243, 570, 825
BseNI ACTGG 2 cut(s) 442, 678
BseRI GAGGAG 1 cut(s) 543
BseXI GCAGC 7 cut(s) 157, 295, 298, 326, 637, 782, 959
BshFI GGCC 4 cut(s) 130, 141, 607, 940
BsiSI CCGG 4 cut(s) 121, 244, 585, 866
BslFI GGGAC 1 cut(s) 558
BslI CCNNNNNNNGG 6 cut(s) 137, 187, 527, 661, 997, 1001
BsmFI GGGAC 1 cut(s) 558
BsmI GAATGC 1 cut(s) 310
BsnI GGCC 4 cut(s) 130, 141, 607, 940
Bsp119I TTCGAA 1 cut(s) 559
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 6 cut(s) 45, 255, 334, 475, 740, 876
BspANI GGCC 4 cut(s) 130, 141, 607, 940
BspCNI CTCAG 3 cut(s) 242, 571, 824
BspLI GGNNCC 2 cut(s) 6, 129
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 999
BspPI GGATC 4 cut(s) 250, 342, 483, 748
BspQI GCTCTTC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 385, 686
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 442, 678
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 45, 255, 334, 475, 740, 876
BssNAI GTATAC 1 cut(s) 511
Bst1107I GTATAC 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 4 cut(s) 151, 426, 570, 978
Bst6I CTCTTC 2 cut(s) 85, 159
BstAUI TGTACA 1 cut(s) 973
BstBI TTCGAA 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 29, 909, 961
BstDEI CTNAG 4 cut(s) 229, 579, 734, 811
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 3 cut(s) 105, 211, 487
BstKTI GATC 6 cut(s) 48, 258, 337, 478, 743, 879
BstMBI GATC 6 cut(s) 45, 255, 334, 475, 740, 876
BstMWI GCNNNNNNNGC 4 cut(s) 314, 375, 712, 956
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 3 cut(s) 185, 243, 864
BstSFI CTRYAG 2 cut(s) 312, 834
BstV1I GCAGC 7 cut(s) 157, 295, 298, 326, 637, 782, 959
BstX2I RGATCY 3 cut(s) 255, 334, 475
BstXI CCANNNNNNTGG 1 cut(s) 615
BstYI RGATCY 3 cut(s) 255, 334, 475
BstZ17I GTATAC 1 cut(s) 511
BsuRI GGCC 4 cut(s) 130, 141, 607, 940
BtsCI GGATG 3 cut(s) 105, 211, 487
BtsIMutI CAGTG 2 cut(s) 435, 819
BveI ACCTGC 1 cut(s) 999
Cac8I GCNNGC 3 cut(s) 29, 909, 961
Cfr13I GGNCC 3 cut(s) 128, 938, 988
Csp6I GTAC 1 cut(s) 974
CviAII CATG 2 cut(s) 260, 820
CviQI GTAC 1 cut(s) 974
DdeI CTNAG 4 cut(s) 229, 579, 734, 811
DpnI GATC 6 cut(s) 47, 257, 336, 477, 742, 878
DpnII GATC 6 cut(s) 45, 255, 334, 475, 740, 876
DrdI GACNNNNNNGTC 1 cut(s) 850
DseDI GACNNNNNNGTC 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 85, 159
EarI CTCTTC 2 cut(s) 85, 159
Eco47I GGWCC 1 cut(s) 988
Eco57I CTGAAG 1 cut(s) 626
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 2 cut(s) 128, 988
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 263, 823
FaqI GGGAC 1 cut(s) 558
FatI CATG 2 cut(s) 259, 819
FauNDI CATATG 1 cut(s) 443
FbaI TGATCA 2 cut(s) 45, 876
FblI GTMKAC 1 cut(s) 510
Fnu4HI GCNGC 7 cut(s) 171, 309, 312, 315, 651, 771, 948
FokI GGATG 3 cut(s) 92, 198, 494
Fsp4HI GCNGC 7 cut(s) 171, 309, 312, 315, 651, 771, 948
FspBI CTAG 3 cut(s) 56, 722, 951
GluI GCNGC 7 cut(s) 171, 309, 312, 315, 651, 771, 948
HaeIII GGCC 4 cut(s) 130, 141, 607, 940
HapII CCGG 4 cut(s) 121, 244, 585, 866
Hin1II CATG 2 cut(s) 263, 823
HindIII AAGCTT 1 cut(s) 847
HinfI GANTC 5 cut(s) 34, 240, 581, 666, 925
HpaII CCGG 4 cut(s) 121, 244, 585, 866
HphI GGTGA 4 cut(s) 313, 416, 466, 880
Hpy166II GTNNAC 5 cut(s) 361, 457, 511, 763, 817
Hpy188I TCNGA 5 cut(s) 353, 580, 881, 892, 930
Hpy188III TCNNGA 2 cut(s) 221, 479
Hpy8I GTNNAC 5 cut(s) 361, 457, 511, 763, 817
HpyAV CCTTC 3 cut(s) 118, 225, 897
HpyCH4III ACNGT 4 cut(s) 151, 426, 570, 978
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 6 cut(s) 20, 314, 491, 679, 770, 963
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 375, 712, 956
HpyF3I CTNAG 4 cut(s) 229, 579, 734, 811
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 2 cut(s) 263, 823
Ksp22I TGATCA 2 cut(s) 45, 876
Kzo9I GATC 6 cut(s) 45, 255, 334, 475, 740, 876
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 7 cut(s) 157, 295, 298, 326, 637, 782, 959
LweI GCATC 1 cut(s) 220
MaeI CTAG 3 cut(s) 56, 722, 951
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 409
MalI GATC 6 cut(s) 47, 257, 336, 477, 742, 878
MboI GATC 6 cut(s) 45, 255, 334, 475, 740, 876
MboII GAAGA 3 cut(s) 57, 102, 176
MflI RGATCY 3 cut(s) 255, 334, 475
MluCI AATT 4 cut(s) 354, 414, 494, 688
MlyI GAGTC 2 cut(s) 28, 590
MmeI TCCRAC 2 cut(s) 274, 331
MnlI CCTC 9 cut(s) 152, 160, 429, 521, 655, 820, 875, 951, 991
MseI TTAA 1 cut(s) 195
MspI CCGG 4 cut(s) 121, 244, 585, 866
MspR9I CCNGG 3 cut(s) 187, 245, 866
Mva1269I GAATGC 1 cut(s) 310
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 4 cut(s) 314, 375, 712, 956
NciI CCSGG 2 cut(s) 245, 866
NdeI CATATG 1 cut(s) 443
NdeII GATC 6 cut(s) 45, 255, 334, 475, 740, 876
NlaIII CATG 2 cut(s) 263, 823
NlaIV GGNNCC 2 cut(s) 6, 129
NmeAIII GCCGAG 2 cut(s) 583, 809
NspV TTCGAA 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 85
PctI GAATGC 1 cut(s) 310
PfeI GAWTC 3 cut(s) 240, 666, 925
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 7 cut(s) 172, 310, 313, 316, 652, 772, 949
PleI GAGTC 2 cut(s) 28, 589
PpsI GAGTC 2 cut(s) 28, 589
PpuMI RGGWCCY 1 cut(s) 988
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 6, 129
PspPI GGNCC 3 cut(s) 128, 938, 988
PspPPI RGGWCCY 1 cut(s) 988
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 3 cut(s) 255, 334, 475
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 1 cut(s) 975
RsaNI GTAC 1 cut(s) 974
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 7 cut(s) 171, 309, 312, 315, 651, 771, 948
Sau3AI GATC 6 cut(s) 45, 255, 334, 475, 740, 876
Sau96I GGNCC 3 cut(s) 128, 938, 988
SchI GAGTC 2 cut(s) 28, 590
ScrFI CCNGG 3 cut(s) 187, 245, 866
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 312, 834
SfuI TTCGAA 1 cut(s) 559
SinI GGWCC 1 cut(s) 988
SpeI ACTAGT 1 cut(s) 55
Sse9I AATT 4 cut(s) 354, 414, 494, 688
SspMI CTAG 3 cut(s) 56, 722, 951
StyD4I CCNGG 3 cut(s) 185, 243, 864
TaaI ACNGT 4 cut(s) 151, 426, 570, 978
TaiI ACGT 1 cut(s) 348
TaqI TCGA 5 cut(s) 559, 631, 669, 692, 923
TasI AATT 4 cut(s) 354, 414, 494, 688
TatI WGTACW 1 cut(s) 973
TfiI GAWTC 3 cut(s) 240, 666, 925
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 442, 819
TseI GCWGC 7 cut(s) 170, 308, 311, 314, 650, 770, 947
TspDTI ATGAA 4 cut(s) 57, 531, 579, 970
TspRI CASTG 2 cut(s) 442, 819
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 988
XagI CCTNNNNNAGG 1 cut(s) 995
XapI RAATTY 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 510
XspI CTAG 3 cut(s) 56, 722, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.