RLG00000027691
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006017
Physical Location & Seq
Reverse (-)
13985646 .. 14038584
52939 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027691

Sequence Viewer

Length: 1041 bp
ATGAAGGGCATACGCTGGATTCTTGAGATTGATCAGCTCAAGTCAGCTCAATCCATGGCTGTCTCAGATTACGGTTTCTGTCGTTGTCACCATGATTTATTATGTAATTTTGATACGGAGATCTTTGAAGCTCATCCAAGAAATAAACCGGAAGGGGCCTTACATTGGCTCATCACAGTCTATCCACCAGAAGAGGCTGCTTTTTTCCACACCGGGGCTTTTAAGCCTAATCCAAAGCATCCTTTTCTGGATTTCTCAGGTAGGCGATTCCGGGTGGGAAAGATCCATGATAAGAAAGTCGTCTATGTGAGATGTGGACATGGAATGGTGAATGCTGCTGCAGCAACACAGCAAATGCTGGATCTATTTGACGTTGTCGGAATTGTTCATTTTGGCATAGCTGGCAGTGCCAATAACTCTATGTCTATTGGTGATGTTACCATTCCTCAAAAGTTTGCTCACACTGGCATATGGGATTGGGTGAACCCAAATGGAACTTTGGATCTGGAAGATGTTGCACAATTAGGCTTTAAAGTATACAATGAACCAAAAGGAGGAGAGAACCTGTTGGGACACATTGGATTTAGAAATGAACGGTTCTATTCTGAGTCCGGTAATCCAAATACTGCTCGGCTGTTGTTTTGGGCAAAGAGTACTCGAAAGTGGCTTCAGGTTGCTGCCCATTTGGAGGGAGTCGAACTGGTGCAATGTGTGAATTCCAGTTTGTGTCTGCCACAGAAGCCCAAGCTAGTTGTTGGTCTTAGGGGATCAACAGGCAACACTTTTGTGGACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTCATGTTTCCTCAGTGGACATGCAAAGCTCGGCTGTAGTAATGACAAGCTTGTCAAATGGCTTCCCGGTGATTGTGATCAGAGGGTTATCAGACTTAGCAGGAAGGCAAGCAGGAGAGAACCCGATTCAGACCTTTGGGCCTCTGGCAGCTATAAATGCTTGCAAAGTAGTTGTACAGTTCATCAAGGACCTGCCAGAGGCAGGGTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

347

Amino Acids

38.25

Weight (kDa)

7.68

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 63 - 338 4.6e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 877
Acc36I ACCTGC 1 cut(s) 1026
AccI GTMKAC 1 cut(s) 537
AclWI GGATC 4 cut(s) 277, 369, 510, 775
AcsI RAATTY 1 cut(s) 715
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 2 cut(s) 655, 1002
AfiI CCNNNNNNNGG 6 cut(s) 165, 214, 554, 688, 1024, 1028
AgsI TTSAA 2 cut(s) 128, 821
AleI CACNNNNGTG 1 cut(s) 785
AluBI AGCT 9 cut(s) 37, 47, 131, 401, 748, 800, 855, 876, 977
AluI AGCT 9 cut(s) 37, 47, 131, 401, 748, 800, 855, 876, 977
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 4 cut(s) 277, 369, 510, 775
AoxI GGCC 2 cut(s) 156, 965
ApeKI GCWGC 7 cut(s) 197, 335, 338, 341, 677, 797, 974
ApoI RAATTY 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 156, 965, 1015
AsuC2I CCSGG 3 cut(s) 214, 272, 893
AsuHPI GGTGA 5 cut(s) 80, 340, 443, 493, 907
AvaII GGWCC 1 cut(s) 1015
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbvI GCAGC 7 cut(s) 184, 322, 325, 353, 664, 809, 986
BclI TGATCA 2 cut(s) 31, 903
BcnI CCSGG 3 cut(s) 214, 272, 893
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 749
BfmI CTRYAG 2 cut(s) 339, 861
BfuAI ACCTGC 1 cut(s) 1026
BglII AGATCT 1 cut(s) 120
BisI GCNGC 7 cut(s) 198, 336, 339, 342, 678, 798, 975
BlsI GCNGC 7 cut(s) 199, 337, 340, 343, 679, 799, 976
BmcAI AGTACT 1 cut(s) 655
Bme1390I CCNGG 3 cut(s) 214, 272, 893
Bme18I GGWCC 1 cut(s) 1015
BmgT120I GGNCC 3 cut(s) 156, 965, 1015
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 3 cut(s) 214, 272, 893
BmsI GCATC 1 cut(s) 247
BpuEI CTTGAG 2 cut(s) 23, 44
BpuMI CCSGG 3 cut(s) 214, 272, 893
BsaBI GATNNNNATC 1 cut(s) 902
BsaJI CCNNGG 2 cut(s) 54, 213
BsaWI WCCGGW 2 cut(s) 148, 611
Bsc4I CCNNNNNNNGG 6 cut(s) 165, 214, 554, 688, 1024, 1028
Bse1I ACTGG 3 cut(s) 469, 705, 720
Bse3DI GCAATG 1 cut(s) 713
Bse8I GATNNNNATC 1 cut(s) 902
BseDI CCNNGG 2 cut(s) 54, 213
BseGI GGATG 2 cut(s) 133, 238
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 6 cut(s) 165, 214, 554, 688, 1024, 1028
BseMI GCAATG 1 cut(s) 713
BseMII CTCAG 4 cut(s) 78, 270, 597, 852
BseNI ACTGG 3 cut(s) 469, 705, 720
BseRI GAGGAG 1 cut(s) 570
BseXI GCAGC 7 cut(s) 184, 322, 325, 353, 664, 809, 986
BshFI GGCC 2 cut(s) 158, 967
BsiSI CCGG 5 cut(s) 149, 213, 271, 612, 893
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 6 cut(s) 165, 214, 554, 688, 1024, 1028
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 585
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 158, 967
Bsp1407I TGTACA 1 cut(s) 1000
Bsp143I GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
Bsp19I CCATGG 1 cut(s) 54
BspANI GGCC 2 cut(s) 158, 967
BspCNI CTCAG 4 cut(s) 77, 269, 598, 851
BspLI GGNNCC 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 1026
BspPI GGATC 4 cut(s) 277, 369, 510, 775
BsrDI GCAATG 1 cut(s) 713
BsrGI TGTACA 1 cut(s) 1000
BsrI ACTGG 3 cut(s) 469, 705, 720
BssECI CCNNGG 2 cut(s) 54, 213
BssMI GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
BssNAI GTATAC 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 538
Bst4CI ACNGT 4 cut(s) 74, 178, 597, 1005
Bst6I CTCTTC 1 cut(s) 186
BstAUI TGTACA 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 403, 936, 988
BstDEI CTNAG 6 cut(s) 64, 256, 606, 761, 838, 922
BstDSI CCRYGG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 1022
BstF5I GGATG 2 cut(s) 133, 238
BstKTI GATC 7 cut(s) 34, 123, 285, 364, 505, 770, 906
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
BstMWI GCNNNNNNNGC 5 cut(s) 341, 402, 407, 739, 983
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 3 cut(s) 212, 270, 891
BstSFI CTRYAG 2 cut(s) 339, 861
BstV1I GCAGC 7 cut(s) 184, 322, 325, 353, 664, 809, 986
BstX2I RGATCY 4 cut(s) 120, 282, 361, 502
BstYI RGATCY 4 cut(s) 120, 282, 361, 502
BstZ17I GTATAC 1 cut(s) 538
BsuRI GGCC 2 cut(s) 158, 967
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 133, 238
BtsI GCAGTG 1 cut(s) 412
BtsIMutI CAGTG 3 cut(s) 412, 462, 846
BveI ACCTGC 1 cut(s) 1026
Cac8I GCNNGC 3 cut(s) 403, 936, 988
Cfr13I GGNCC 3 cut(s) 156, 965, 1015
Csp6I GTAC 2 cut(s) 654, 1001
CviAII CATG 6 cut(s) 55, 92, 287, 320, 830, 847
CviQI GTAC 2 cut(s) 654, 1001
DdeI CTNAG 6 cut(s) 64, 256, 606, 761, 838, 922
DpnI GATC 7 cut(s) 33, 122, 284, 363, 504, 769, 905
DpnII GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
DraI TTTAAA 1 cut(s) 532
DrdI GACNNNNNNGTC 1 cut(s) 877
DseDI GACNNNNNNGTC 1 cut(s) 877
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 1015
Eco57I CTGAAG 1 cut(s) 653
EcoNI CCTNNNNNAGG 1 cut(s) 1022
EcoO109I RGGNCCY 2 cut(s) 156, 1015
EcoRI GAATTC 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 6 cut(s) 58, 95, 290, 323, 833, 850
FaqI GGGAC 1 cut(s) 585
FatI CATG 6 cut(s) 54, 91, 286, 319, 829, 846
FauNDI CATATG 1 cut(s) 470
FbaI TGATCA 2 cut(s) 31, 903
FblI GTMKAC 1 cut(s) 537
Fnu4HI GCNGC 7 cut(s) 198, 336, 339, 342, 678, 798, 975
FokI GGATG 2 cut(s) 120, 225
Fsp4HI GCNGC 7 cut(s) 198, 336, 339, 342, 678, 798, 975
FspBI CTAG 1 cut(s) 749
GluI GCNGC 7 cut(s) 198, 336, 339, 342, 678, 798, 975
HaeIII GGCC 2 cut(s) 158, 967
HapII CCGG 5 cut(s) 149, 213, 271, 612, 893
Hin1II CATG 6 cut(s) 58, 95, 290, 323, 833, 850
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 5 cut(s) 19, 267, 608, 693, 952
HpaII CCGG 5 cut(s) 149, 213, 271, 612, 893
HphI GGTGA 5 cut(s) 80, 340, 443, 493, 907
Hpy166II GTNNAC 5 cut(s) 317, 484, 538, 790, 844
Hpy188I TCNGA 6 cut(s) 67, 380, 607, 908, 919, 957
Hpy188III TCNNGA 3 cut(s) 23, 248, 506
Hpy8I GTNNAC 5 cut(s) 317, 484, 538, 790, 844
HpyAV CCTTC 2 cut(s) 146, 924
HpyCH4III ACNGT 4 cut(s) 74, 178, 597, 1005
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 6 cut(s) 341, 518, 706, 797, 850, 990
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 402, 407, 739, 983
HpyF3I CTNAG 6 cut(s) 64, 256, 606, 761, 838, 922
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 6 cut(s) 58, 95, 290, 323, 833, 850
Ksp22I TGATCA 2 cut(s) 31, 903
Kzo9I GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
Lsp1109I GCAGC 7 cut(s) 184, 322, 325, 353, 664, 809, 986
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 749
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 86, 436
MalI GATC 7 cut(s) 33, 122, 284, 363, 504, 769, 905
MboI GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
MboII GAAGA 2 cut(s) 203, 521
MflI RGATCY 4 cut(s) 120, 282, 361, 502
MluCI AATT 4 cut(s) 106, 381, 521, 715
MlyI GAGTC 2 cut(s) 617, 702
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 8 cut(s) 187, 456, 548, 682, 847, 902, 978, 1018
MseI TTAA 2 cut(s) 222, 531
MslI CAYNNNNRTG 1 cut(s) 785
MspI CCGG 5 cut(s) 149, 213, 271, 612, 893
MspR9I CCNGG 3 cut(s) 214, 272, 893
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 5 cut(s) 341, 402, 407, 739, 983
NciI CCSGG 3 cut(s) 214, 272, 893
NcoI CCATGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 470
NdeII GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
NlaIII CATG 6 cut(s) 58, 95, 290, 323, 833, 850
NlaIV GGNNCC 1 cut(s) 157
NmeAIII GCCGAG 2 cut(s) 610, 836
NmuCI GTSAC 1 cut(s) 86
NspI RCATGY 1 cut(s) 850
OliI CACNNNNGTG 1 cut(s) 785
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 3 cut(s) 19, 267, 952
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 7 cut(s) 199, 337, 340, 343, 679, 799, 976
PleI GAGTC 2 cut(s) 616, 701
PpsI GAGTC 2 cut(s) 616, 701
PpuMI RGGWCCY 1 cut(s) 1015
Psp5II RGGWCCY 1 cut(s) 1015
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 3 cut(s) 156, 965, 1015
PspPPI RGGWCCY 1 cut(s) 1015
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 4 cut(s) 120, 282, 361, 502
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 2 cut(s) 655, 1002
RsaNI GTAC 2 cut(s) 654, 1001
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 2 cut(s) 222, 531
SatI GCNGC 7 cut(s) 198, 336, 339, 342, 678, 798, 975
Sau3AI GATC 7 cut(s) 31, 120, 282, 361, 502, 767, 903
Sau96I GGNCC 3 cut(s) 156, 965, 1015
ScaI AGTACT 1 cut(s) 655
SchI GAGTC 2 cut(s) 617, 702
ScrFI CCNGG 3 cut(s) 214, 272, 893
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 339, 861
SinI GGWCC 1 cut(s) 1015
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 23, 38
SmoI CTYRAG 2 cut(s) 23, 38
Sse9I AATT 4 cut(s) 106, 381, 521, 715
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 3 cut(s) 212, 270, 891
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 4 cut(s) 74, 178, 597, 1005
TaiI ACGT 1 cut(s) 375
TaqI TCGA 2 cut(s) 658, 696
TasI AATT 4 cut(s) 106, 381, 521, 715
TatI WGTACW 2 cut(s) 653, 1000
TfiI GAWTC 3 cut(s) 19, 267, 952
Tru1I TTAA 2 cut(s) 222, 531
Tru9I TTAA 2 cut(s) 222, 531
TscAI CASTG 3 cut(s) 412, 469, 846
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 7 cut(s) 197, 335, 338, 341, 677, 797, 974
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 6 cut(s) 17, 377, 558, 606, 818, 997
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 3 cut(s) 412, 469, 846
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 1015
XagI CCTNNNNNAGG 1 cut(s) 1022
XapI RAATTY 1 cut(s) 715
XceI RCATGY 1 cut(s) 850
XmiI GTMKAC 1 cut(s) 537
XspI CTAG 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.