RchiOBHm_Chr1g0361871
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006017
Physical Location & Seq
Forward (+)
53668667 .. 53670280
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58673

Sequence Viewer

Length: 1026 bp
ATGGAGACGACCATGGCTCCAAAACAAGTTGCAGAATGCTTGCTGACTCTGGTTATGATCAATCTACTAGTTGTTTCTTCATTTTCTTTGCCACTCAATAGGAGATCTTTGAAGCTCATCCAAGAAATAAACCGGAAGGGGCCTTACATTGGCCTCATCACAGTCTATCCACCAGAAGAGGCTGCTTTTTTCAACACCGGGGCTTTTAAGCCTAATCCAAAGCATCCTTTTCTGGATTTCTCAGGTAGGCGATTCCGGGTGGGAAAGATCCATGATAAGAAAGTCGTCTATGTGAGATGTGGAGTTGGAATGGTGAATGCTGCTGCAGCAACACAGCAAATGCTGGATCTATTTGACGTTGTCGGAATTGTTCACTTTGGCATATCTGGCAATGCCAACAACTCTATGTCTATTGGTGATGTTACCATTCCTCAACAGTTAGCTCACACTGGCATATGGGATTGGGCGAACCCAAATAGAACTTTGGATCTGGATGATGTTGCACAATTAGACTTTGAAGAATACAATGAACCAAAAGGAGGAGAGAACCTGTTGGGACACATTGGATTTAGAAATGAACAGTTCTATTCTGAGTCCGGTAATCCAAATATCGCTCGGCCATTGTTTTGGGCAAAGACTACTCGAAAGTGGCTTCAGTTTGCTGCCCATTTGGAGGGAGTCGAACTGGTGCAATGTGTGAATTCGAGTTTGTGTCTGCCACAGAAGCCCAAGCTAGTTGTTGGTCTTAGGGGATCAACAGGCAACACTTTTGTGGACAATGCAGCTTACAGGAACTTCCTTTTTCAAACTTTTCATGTTTCCTCAGTGGACATGGAAAGCTCGGCTGTAGTAATGACAAGCTTGTCAAATGGCTTCCCGGTGATTGTGATCAGAGGGTTATCAGACTTAGCAGGAAGGCAAGCAGGAGAGAACCCGATTCAGACCTTTGGGCCTCTGGCAGCTATAAATGCTTGCAAAGTAGTTGTACAGTTCATCAAGGACCTGCCAGAGGCAGGGTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

341

Amino Acids

37.55

Weight (kDa)

7.05

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 50 - 333 3.6e-32 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 862
Acc36I ACCTGC 1 cut(s) 1011
AclWI GGATC 4 cut(s) 262, 354, 495, 760
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 1 cut(s) 987
AfiI CCNNNNNNNGG 5 cut(s) 149, 539, 673, 1009, 1013
AgsI TTSAA 4 cut(s) 112, 193, 518, 806
AhlI ACTAGT 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 7 cut(s) 115, 443, 733, 785, 840, 861, 962
AluI AGCT 7 cut(s) 115, 443, 733, 785, 840, 861, 962
AlwI GGATC 4 cut(s) 262, 354, 495, 760
AoxI GGCC 4 cut(s) 140, 151, 617, 950
ApeKI GCWGC 7 cut(s) 182, 320, 323, 326, 662, 782, 959
ApoI RAATTY 1 cut(s) 700
AspS9I GGNCC 3 cut(s) 140, 950, 1000
AsuC2I CCSGG 3 cut(s) 199, 257, 878
AsuHPI GGTGA 3 cut(s) 325, 428, 892
AvaII GGWCC 1 cut(s) 1000
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BbvI GCAGC 7 cut(s) 169, 307, 310, 338, 649, 794, 971
BclI TGATCA 2 cut(s) 57, 888
BcnI CCSGG 3 cut(s) 199, 257, 878
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 2 cut(s) 68, 734
BfmI CTRYAG 2 cut(s) 324, 846
BfuAI ACCTGC 1 cut(s) 1011
BglII AGATCT 1 cut(s) 104
BisI GCNGC 7 cut(s) 183, 321, 324, 327, 663, 783, 960
BlsI GCNGC 7 cut(s) 184, 322, 325, 328, 664, 784, 961
Bme1390I CCNGG 3 cut(s) 199, 257, 878
Bme18I GGWCC 1 cut(s) 1000
BmgT120I GGNCC 3 cut(s) 140, 950, 1000
BmiI GGNNCC 2 cut(s) 18, 141
BmrFI CCNGG 3 cut(s) 199, 257, 878
BmsI GCATC 1 cut(s) 232
BpuMI CCSGG 3 cut(s) 199, 257, 878
BsaBI GATNNNNATC 1 cut(s) 887
BsaJI CCNNGG 2 cut(s) 12, 198
BsaWI WCCGGW 2 cut(s) 132, 596
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 539, 673, 1009, 1013
Bse1I ACTGG 2 cut(s) 454, 690
Bse3DI GCAATG 2 cut(s) 397, 698
Bse8I GATNNNNATC 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 12, 198
BseGI GGATG 3 cut(s) 117, 223, 499
BseJI GATNNNNATC 1 cut(s) 887
BseLI CCNNNNNNNGG 5 cut(s) 149, 539, 673, 1009, 1013
BseMI GCAATG 2 cut(s) 397, 698
BseMII CTCAG 3 cut(s) 255, 582, 837
BseNI ACTGG 2 cut(s) 454, 690
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 7 cut(s) 169, 307, 310, 338, 649, 794, 971
BshFI GGCC 4 cut(s) 142, 153, 619, 952
BsiSI CCGG 5 cut(s) 133, 198, 256, 597, 878
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 5 cut(s) 149, 539, 673, 1009, 1013
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 2 cut(s) 41, 322
BsnI GGCC 4 cut(s) 142, 153, 619, 952
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 4 cut(s) 142, 153, 619, 952
BspCNI CTCAG 3 cut(s) 254, 583, 836
BspLI GGNNCC 2 cut(s) 18, 141
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 1011
BspPI GGATC 4 cut(s) 262, 354, 495, 760
BsrDI GCAATG 2 cut(s) 397, 698
BsrGI TGTACA 1 cut(s) 985
BsrI ACTGG 2 cut(s) 454, 690
BssECI CCNNGG 2 cut(s) 12, 198
BssMI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 163, 438, 582, 990
Bst6I CTCTTC 1 cut(s) 171
BstAUI TGTACA 1 cut(s) 985
BstC8I GCNNGC 3 cut(s) 41, 921, 973
BstDEI CTNAG 5 cut(s) 241, 591, 746, 823, 907
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 3 cut(s) 117, 223, 499
BstKTI GATC 7 cut(s) 60, 107, 270, 349, 490, 755, 891
BstMBI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
BstMWI GCNNNNNNNGC 4 cut(s) 326, 387, 724, 968
BstSCI CCNGG 3 cut(s) 197, 255, 876
BstSFI CTRYAG 2 cut(s) 324, 846
BstV1I GCAGC 7 cut(s) 169, 307, 310, 338, 649, 794, 971
BstX2I RGATCY 4 cut(s) 104, 267, 346, 487
BstXI CCANNNNNNTGG 1 cut(s) 627
BstYI RGATCY 4 cut(s) 104, 267, 346, 487
BsuRI GGCC 4 cut(s) 142, 153, 619, 952
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 117, 223, 499
BtsIMutI CAGTG 2 cut(s) 447, 831
BveI ACCTGC 1 cut(s) 1011
Cac8I GCNNGC 3 cut(s) 41, 921, 973
Cfr13I GGNCC 3 cut(s) 140, 950, 1000
Csp6I GTAC 1 cut(s) 986
CviAII CATG 4 cut(s) 13, 272, 815, 832
CviQI GTAC 1 cut(s) 986
DdeI CTNAG 5 cut(s) 241, 591, 746, 823, 907
DpnI GATC 7 cut(s) 59, 106, 269, 348, 489, 754, 890
DpnII GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
DrdI GACNNNNNNGTC 1 cut(s) 862
DseDI GACNNNNNNGTC 1 cut(s) 862
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 638
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoO109I RGGNCCY 2 cut(s) 140, 1000
EcoRI GAATTC 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 275, 818, 835
FaqI GGGAC 1 cut(s) 570
FatI CATG 4 cut(s) 12, 271, 814, 831
FauNDI CATATG 1 cut(s) 455
FbaI TGATCA 2 cut(s) 57, 888
Fnu4HI GCNGC 7 cut(s) 183, 321, 324, 327, 663, 783, 960
FokI GGATG 3 cut(s) 104, 210, 506
Fsp4HI GCNGC 7 cut(s) 183, 321, 324, 327, 663, 783, 960
FspBI CTAG 2 cut(s) 68, 734
GluI GCNGC 7 cut(s) 183, 321, 324, 327, 663, 783, 960
HaeIII GGCC 4 cut(s) 142, 153, 619, 952
HapII CCGG 5 cut(s) 133, 198, 256, 597, 878
Hin1II CATG 4 cut(s) 16, 275, 818, 835
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 5 cut(s) 46, 252, 593, 678, 937
HpaII CCGG 5 cut(s) 133, 198, 256, 597, 878
HphI GGTGA 3 cut(s) 325, 428, 892
Hpy166II GTNNAC 3 cut(s) 373, 775, 829
Hpy188I TCNGA 5 cut(s) 365, 592, 893, 904, 942
Hpy188III TCNNGA 2 cut(s) 233, 491
Hpy8I GTNNAC 3 cut(s) 373, 775, 829
HpyAV CCTTC 2 cut(s) 130, 909
HpyCH4III ACNGT 4 cut(s) 163, 438, 582, 990
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 6 cut(s) 32, 326, 503, 691, 782, 975
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 387, 724, 968
HpyF3I CTNAG 5 cut(s) 241, 591, 746, 823, 907
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 4 cut(s) 16, 275, 818, 835
Ksp22I TGATCA 2 cut(s) 57, 888
Kzo9I GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 7 cut(s) 169, 307, 310, 338, 649, 794, 971
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 68, 734
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 421
MalI GATC 7 cut(s) 59, 106, 269, 348, 489, 754, 890
MboI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
MboII GAAGA 3 cut(s) 69, 188, 530
MflI RGATCY 4 cut(s) 104, 267, 346, 487
MluCI AATT 3 cut(s) 366, 506, 700
MlyI GAGTC 3 cut(s) 40, 602, 687
MmeI TCCRAC 2 cut(s) 286, 343
MnlI CCTC 9 cut(s) 164, 172, 441, 533, 667, 832, 887, 963, 1003
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 5 cut(s) 133, 198, 256, 597, 878
MspR9I CCNGG 3 cut(s) 199, 257, 878
Mva1269I GAATGC 2 cut(s) 41, 322
MwoI GCNNNNNNNGC 4 cut(s) 326, 387, 724, 968
NciI CCSGG 3 cut(s) 199, 257, 878
NcoI CCATGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 455
NdeII GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
NlaIII CATG 4 cut(s) 16, 275, 818, 835
NlaIV GGNNCC 2 cut(s) 18, 141
NmeAIII GCCGAG 2 cut(s) 595, 821
OliI CACNNNNGTG 1 cut(s) 770
PctI GAATGC 2 cut(s) 41, 322
PfeI GAWTC 2 cut(s) 252, 937
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 7 cut(s) 184, 322, 325, 328, 664, 784, 961
PleI GAGTC 3 cut(s) 40, 601, 686
PpsI GAGTC 3 cut(s) 40, 601, 686
PpuMI RGGWCCY 1 cut(s) 1000
Psp5II RGGWCCY 1 cut(s) 1000
PspN4I GGNNCC 2 cut(s) 18, 141
PspPI GGNCC 3 cut(s) 140, 950, 1000
PspPPI RGGWCCY 1 cut(s) 1000
PstI CTGCAG 1 cut(s) 328
PsuI RGATCY 4 cut(s) 104, 267, 346, 487
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 1 cut(s) 987
RsaNI GTAC 1 cut(s) 986
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 7 cut(s) 183, 321, 324, 327, 663, 783, 960
Sau3AI GATC 7 cut(s) 57, 104, 267, 346, 487, 752, 888
Sau96I GGNCC 3 cut(s) 140, 950, 1000
SchI GAGTC 3 cut(s) 40, 602, 687
ScrFI CCNGG 3 cut(s) 199, 257, 878
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 324, 846
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 1 cut(s) 770
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 3 cut(s) 366, 506, 700
SspMI CTAG 2 cut(s) 68, 734
StyD4I CCNGG 3 cut(s) 197, 255, 876
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 4 cut(s) 163, 438, 582, 990
TaiI ACGT 1 cut(s) 360
TaqI TCGA 3 cut(s) 643, 681, 704
TasI AATT 3 cut(s) 366, 506, 700
TatI WGTACW 1 cut(s) 985
TfiI GAWTC 2 cut(s) 252, 937
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 454, 831
TseI GCWGC 7 cut(s) 182, 320, 323, 326, 662, 782, 959
TspDTI ATGAA 5 cut(s) 69, 543, 591, 803, 982
TspRI CASTG 2 cut(s) 454, 831
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 1000
XagI CCTNNNNNAGG 1 cut(s) 1007
XapI RAATTY 1 cut(s) 700
XspI CTAG 2 cut(s) 68, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.