Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006017

Physical Location & Seq

Genomic Coordinates Reverse (-)

40859351 .. 40862070

Gene Structure 2720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGTTCCCATTCTTGGAAGCTGTTATTGGTTTTATGATATTGATGTACAACTTTGAAACTTATTTGGATTTCCGCCAACATGCTGCTCTGAAACTTCCAACACTTCCTAAAACTTTGGAAGGAGTAATCAGCCAACAAAAGTTTGAGAAGTCGAGAGCCTACCGTCTTGAAAGAAGCAACTTCCATTTTGTTCATGATTTTGTGACCTTACTTATGGACTCAGCAATTTTGTTCTATCGGATTTTGCCTTGGTTTTGGAAGAAATCAGGAGACTTTGTAGTCTTAGCTGGCCTCAATGCCCAAAATGAAATACTACATACCCTTGCGTTTTTAGCTGGTGTGATGATTTGGGAACAGATCACAGACTTACCATTCTCTCTGTACTCCACATTTGTGATCGAGGCTCGTCATGGTTTCAATAACCAAACAATATGGTTGTTCTTGAAAGACATGTTAAAAGAAATTTGTCTTTCTGTTATTATTGCCCCACCTATTGTGTCTGCAATCATTGTAATTGTAGAGAAAGGAGGTGCTTACTTGGTCATTTATCTTTGGGCGTTCATGCTTGTCCTCTCTTTTGTGATGATGACGATCTACCCTATTCTAATAGCCCCACTTTTTAACAAGTTCACCCCTCTTCCTGAGGGTCAGCTGAGGGAGAAAATTGAGAAGCTCGCTTCTTCCCTCAAGTTTCCATTGAAGAAGTTGTTTGTTGTTGATGGATCTATAAGGTCAAGACACAGCAATGCCTATATGTATGGATTTTTTAAGAACAAGAGGATTGTCCTTTATGATACACTGATCCAGCAGTGTACAAATGATGAGGAAATTGTAGCTGTTCTAGCTCATGAGCTGGGCCATTGGAAGCTTAATCACAGTGTGTACTTATTTATTTCTACGCAGATCCGTATGCTTTTACACTTCGGGGGATATGCTCTCCTGAGAAACTCCAGCAGTCTGTTTCTAAGTTTTGGGTTTGATACTCAACCAGTGATCATTGGTCTCATCATATTTCAGCATACCATAACACCTATCCAGCACCTAGTACACTTTGCTCGCAACCTTGTGAGCCGAGCTTTTGAATTTCAGGCTGATGCTTTTGCTAAGAAACTTGGTTATGCCTCTTCACTTCGAGCTAGTCTTGTTAGGCTACAGGAAGAGAATTTGTCAGCTATAAATACTGATCCTTGGTACTCGGCATATCACTATTCTCATCCCCCTCTAGTCGAAAGGTTGGCTGCAATTGGTGAAACAGACAAGAAAACAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

424

Amino Acids

48.8

Weight (kDa)

8.79

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48_N	PF16491	27 - 210	1.9e-62	CAAX prenyl protease N-terminal, five membrane helices
Peptidase_M48	PF01435	213 - 418	2.4e-46	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24340 AT4G24350 AT4G24350 AT4G24350 AT4G24350
malus_domestica	MD01G1098600.v1.1
prunus_persica	Prupe.2G204100_v2.0.a1 Prupe.2G204100_v2.0.a1 Prupe.2G204100_v2.0.a1 Prupe.2G204400_v2.0.a1 Prupe.2G204400_v2.0.a1 Prupe.2G204400_v2.0.a1
pyrus_communis	pycom01g12550 pycom01g12560
rosa_chinensis	RchiOBHm_Chr1g0361871 RchiOBHm_Chr1g0361891
rosa_laevigata	RLG00000027691 RLG00000027695
rosa_multiflora	Rmu_sc0008041.1_g000012 Rmu_ssc0000124.1_g000012
rosa_rugosa	Rorug01G0292200
rosa_samantha	Rh1AG302700 Rh1BG265800 Rh1CG283900 Rh1CG284100 Rh1DG295800
rosa_wichuraiana	Rw1G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	281
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	4 cut(s)	733, 799, 901, 1181
AcsI	RAATTY	3 cut(s)	465, 1085, 1165
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	6 cut(s)	50, 386, 817, 887, 1050, 1196
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	6 cut(s)	59, 173, 421, 448, 703, 1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	267, 1010
AlwI	GGATC	4 cut(s)	733, 799, 901, 1181
AoxI	GGCC	2 cut(s)	292, 859
ApeKI	GCWGC	2 cut(s)	86, 1241
ApoI	RAATTY	3 cut(s)	465, 1085, 1165
AspS9I	GGNCC	1 cut(s)	859
AsuHPI	GGTGA	2 cut(s)	625, 1262
AxyI	CCTNAGG	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	73, 1228
BccI	CCATC	1 cut(s)	716
BclI	TGATCA	1 cut(s)	996
BcoDI	GTCTC	2 cut(s)	267, 1010
BfaI	CTAG	4 cut(s)	845, 1046, 1140, 1226
BfmI	CTRYAG	1 cut(s)	1154
BisI	GCNGC	2 cut(s)	87, 1242
BlsI	GCNGC	2 cut(s)	88, 1243
BmgT120I	GGNCC	1 cut(s)	859
BmsI	GCATC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	937
Bpu10I	CCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	1010
BsaJI	CCNNGG	2 cut(s)	251, 1190
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	992
Bse21I	CCTNAGG	1 cut(s)	645
Bse3DI	GCAATG	1 cut(s)	754
Bse8I	GATNNNNATC	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	251, 1190
BseGI	GGATG	1 cut(s)	1216
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	754
BseMII	CTCAG	4 cut(s)	237, 636, 647, 935
BseNI	ACTGG	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	73, 1228
BseYI	CCCAGC	1 cut(s)	856
BshFI	GGCC	2 cut(s)	294, 861
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	2 cut(s)	267, 1010
BsnI	GGCC	2 cut(s)	294, 861
Bso31I	GGTCTC	1 cut(s)	1010
Bsp1407I	TGTACA	2 cut(s)	48, 815
Bsp143I	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	294, 861
BspCNI	CTCAG	4 cut(s)	236, 637, 648, 936
BspHI	TCATGA	2 cut(s)	196, 850
BspPI	GGATC	4 cut(s)	733, 799, 901, 1181
BspTNI	GGTCTC	1 cut(s)	1010
BsrDI	GCAATG	1 cut(s)	754
BsrGI	TGTACA	2 cut(s)	48, 815
BsrI	ACTGG	1 cut(s)	992
BssECI	CCNNGG	2 cut(s)	251, 1190
BssMI	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
BssT1I	CCWWGG	2 cut(s)	251, 1190
Bst4CI	ACNGT	2 cut(s)	167, 881
Bst6I	CTCTTC	3 cut(s)	645, 1132, 1155
BstAUI	TGTACA	2 cut(s)	48, 815
BstC8I	GCNNGC	3 cut(s)	292, 678, 1060
BstDEI	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1107
BstF5I	GGATG	1 cut(s)	1216
BstKTI	GATC	8 cut(s)	363, 402, 597, 728, 807, 909, 999, 1189
BstMAI	GTCTC	2 cut(s)	267, 1010
BstMBI	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 845
BstNSI	RCATGY	2 cut(s)	86, 457
BstSFI	CTRYAG	1 cut(s)	1154
BstV1I	GCAGC	2 cut(s)	73, 1228
BstX2I	RGATCY	2 cut(s)	725, 906
BstYI	RGATCY	2 cut(s)	725, 906
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	294, 861
BtsCI	GGATG	1 cut(s)	1216
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	4 cut(s)	800, 818, 886, 999
Cac8I	GCNNGC	3 cut(s)	292, 678, 1060
CciI	TCATGA	2 cut(s)	196, 850
Cfr13I	GGNCC	1 cut(s)	859
Csp6I	GTAC	6 cut(s)	49, 385, 816, 886, 1049, 1195
CviAII	CATG	6 cut(s)	83, 197, 413, 454, 565, 851
CviQI	GTAC	6 cut(s)	49, 385, 816, 886, 1049, 1195
DdeI	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1107
DpnI	GATC	8 cut(s)	362, 401, 596, 727, 806, 908, 998, 1188
DpnII	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
DraIII	CACNNNGTG	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
Eam1104I	CTCTTC	3 cut(s)	645, 1132, 1155
EarI	CTCTTC	3 cut(s)	645, 1132, 1155
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	251, 1190
Eco31I	GGTCTC	1 cut(s)	1010
Eco81I	CCTNAGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	251, 1190
ErhI	CCWWGG	2 cut(s)	251, 1190
FaeI	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
FatI	CATG	6 cut(s)	82, 196, 412, 453, 564, 850
FbaI	TGATCA	1 cut(s)	996
Fnu4HI	GCNGC	2 cut(s)	87, 1242
FokI	GGATG	1 cut(s)	1203
Fsp4HI	GCNGC	2 cut(s)	87, 1242
FspBI	CTAG	4 cut(s)	845, 1046, 1140, 1226
GluI	GCNGC	2 cut(s)	87, 1242
GsaI	CCCAGC	1 cut(s)	860
GsuI	CTGGAG	1 cut(s)	937
HaeIII	GGCC	2 cut(s)	294, 861
Hin1II	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	1 cut(s)	221
HphI	GGTGA	2 cut(s)	625, 1262
Hpy166II	GTNNAC	4 cut(s)	633, 816, 886, 1051
Hpy188I	TCNGA	2 cut(s)	93, 243
Hpy188III	TCNNGA	9 cut(s)	156, 170, 197, 270, 445, 644, 738, 851, 943
Hpy8I	GTNNAC	4 cut(s)	633, 816, 886, 1051
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	167, 881
HpyCH4V	TGCA	2 cut(s)	506, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 845
HpyF3I	CTNAG	7 cut(s)	223, 286, 645, 656, 944, 968, 1107
Hsp92II	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
Ksp22I	TGATCA	1 cut(s)	996
Kzo9I	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
Lsp1109I	GCAGC	2 cut(s)	73, 1228
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	4 cut(s)	845, 1046, 1140, 1226
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	8 cut(s)	362, 401, 596, 727, 806, 908, 998, 1188
MboI	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
MboII	GAAGA	6 cut(s)	274, 632, 675, 715, 1119, 1172
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	2 cut(s)	725, 906
MluCI	AATT	8 cut(s)	228, 465, 516, 666, 831, 1085, 1165, 1245
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	125
MseI	TTAA	4 cut(s)	458, 624, 771, 873
MslI	CAYNNNNRTG	2 cut(s)	395, 747
MspA1I	CMGCKG	1 cut(s)	655
MunI	CAATTG	1 cut(s)	1245
MwoI	GCNNNNNNNGC	2 cut(s)	335, 845
NdeII	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
NlaIII	CATG	6 cut(s)	86, 200, 416, 457, 568, 854
NmeAIII	GCCGAG	2 cut(s)	1100, 1178
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	2 cut(s)	86, 457
OliI	CACNNNNGTG	1 cut(s)	395
PagI	TCATGA	2 cut(s)	196, 850
PciI	ACATGT	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	88, 1243
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	856
PspPI	GGNCC	1 cut(s)	859
PsuI	RGATCY	2 cut(s)	725, 906
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	6 cut(s)	50, 386, 817, 887, 1050, 1196
RsaNI	GTAC	6 cut(s)	49, 385, 816, 886, 1049, 1195
RseI	CAYNNNNRTG	2 cut(s)	395, 747
SaqAI	TTAA	4 cut(s)	458, 624, 771, 873
SatI	GCNGC	2 cut(s)	87, 1242
Sau3AI	GATC	8 cut(s)	360, 399, 594, 725, 804, 906, 996, 1186
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	1087
SfcI	CTRYAG	1 cut(s)	1154
SmiMI	CAYNNNNRTG	2 cut(s)	395, 747
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	8 cut(s)	228, 465, 516, 666, 831, 1085, 1165, 1245
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	4 cut(s)	845, 1046, 1140, 1226
StyI	CCWWGG	2 cut(s)	251, 1190
TaaI	ACNGT	2 cut(s)	167, 881
TaqI	TCGA	4 cut(s)	155, 402, 1135, 1230
TasI	AATT	8 cut(s)	228, 465, 516, 666, 831, 1085, 1165, 1245
TatI	WGTACW	5 cut(s)	48, 384, 815, 885, 1048
Tru1I	TTAA	4 cut(s)	458, 624, 771, 873
Tru9I	TTAA	4 cut(s)	458, 624, 771, 873
TscAI	CASTG	4 cut(s)	807, 818, 886, 999
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	86, 1241
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	185, 324, 553
TspGWI	ACGGA	1 cut(s)	899
TspRI	CASTG	4 cut(s)	807, 818, 886, 999
XapI	RAATTY	3 cut(s)	465, 1085, 1165
XceI	RCATGY	2 cut(s)	86, 457
XspI	CTAG	4 cut(s)	845, 1046, 1140, 1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.