AT4G24350
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006017
Physical Location & Seq
Forward (+)
12609373 .. 12611468
2096 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24350.4

Sequence Viewer

Length: 1011 bp
ATGGACCACACTCTTTCTCTTCTTCCATTTCTCTTCATCATAATCATTTCTTCCTTCCATGTTTTGCCTGTTTCACCCACACCTTCACACAAACTAAAATCCGCCACTACCATCAGAAAACTCAACCGCGGAGGACCTTACATCGGTCTCGTGACGGTCATTGCGACCGAAGAAAATGCTTTTCTCCGCAGTGTCGATTTCAGACCTGACCCTACTCATCCCTTCTTGGATCTCTCTGGGAGACGTTTTCGAATAGGGAAGATTCATGGAAAGAAGGTTGTGTATGTTAGATGTGGGAGAGGAATGGTGAATGGAGCAGCAGCAACACAACAGATGATAGATGTGTTCAATGTGAAAGGGATAGTGCATTTTGGGATTGCTGGAAATATGAACAACTCAATGTCCATAGGAGATGTGAGCATCCCTAAGCAAATTACGAATGCTGGCTTGTGGGATTGGCTGAATCCAGACAAAGTAAAGGGAGTTGAGGATATAGCGTACTTAGATGTCGGAAACTATAATGTTCCAAAAGGAGATGGCGACAATGAGTTAGGGAGTATTGGATATAATTACGAGCAACTATATTCAGTCACTGGTCACATCAATGCACCTCAGAATGTGTTTTGGATCAACACAACTCAAGAGTGGCTTCATCTTGCAGCTGATCTAGAGAAGATGGAGCTATCGCAGTGTGTAAATGCAAGTTTGTGTCTTCCAAAGAAACCAAAATTGGTAGTTGGATTGAAAGCAGCCACTGCTTACATATTTGTGGATAATGCAGCCTATAGAAATTTCTTATACGATACTTTTGGAGTCTCCTCCTCTGATATGGAGAGTTCTGCAGTAGCCATGACATGCGCATCAAATGGGTATCCGATAATTGTGATAAGGGGTTTATCAGATTTAGCTGGAGAAGGAGGAGATAACACTGTTCATAAGTTTGGATCTTTGGCTGCCACTAACACTGCCAAAGCTGTTTTAGAGTTCATTAGGAAGCTCCCACCGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

336

Amino Acids

36.7

Weight (kDa)

8.23

Isoelectric Point (pI)

22.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 9 - 191 1.9e-16 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 859
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 102, 127, 129, 187
AclWI GGATC 3 cut(s) 237, 635, 952
AcsI RAATTY 1 cut(s) 790
AfaI GTAC 2 cut(s) 500, 1007
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 2 cut(s) 349, 745
AjuI GAANNNNNNNTTGG 2 cut(s) 713, 745
AluBI AGCT 5 cut(s) 662, 682, 908, 974, 997
AluI AGCT 5 cut(s) 662, 682, 908, 974, 997
Alw26I GTCTC 3 cut(s) 152, 235, 820
AlwI GGATC 3 cut(s) 237, 635, 952
AlwNI CAGNNNCTG 2 cut(s) 593, 755
ApeKI GCWGC 6 cut(s) 317, 320, 659, 749, 779, 953
ApoI RAATTY 1 cut(s) 790
AspLEI GCGC 1 cut(s) 860
AspS9I GGNCC 2 cut(s) 4, 134
AsuHPI GGTGA 2 cut(s) 66, 319
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 4, 134
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 704
BbvI GCAGC 6 cut(s) 329, 332, 671, 761, 791, 940
BccI CCATC 3 cut(s) 119, 530, 670
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciVI GTATCC 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 152, 235, 820
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 2 cut(s) 784, 840
BfuI GTATCC 1 cut(s) 882
BisI GCNGC 6 cut(s) 318, 321, 660, 750, 780, 954
BlsI GCNGC 6 cut(s) 319, 322, 661, 751, 781, 955
Bme18I GGWCC 2 cut(s) 4, 134
BmgT120I GGNCC 2 cut(s) 4, 134
BmsI GCATC 2 cut(s) 429, 869
BpiI GAAGAC 1 cut(s) 704
BpmI CTGGAG 1 cut(s) 930
Bpu10I CCTNAGC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 624
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 598
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 217, 420
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 626
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 3 cut(s) 808, 811, 933
BseXI GCAGC 6 cut(s) 329, 332, 671, 761, 791, 940
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 3 cut(s) 152, 235, 820
BsmBI CGTCTC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 152
Bsp119I TTCGAA 1 cut(s) 250
Bsp143I GATC 4 cut(s) 229, 627, 664, 944
BspACI CCGC 4 cut(s) 102, 127, 129, 187
BspCNI CTCAG 1 cut(s) 625
BspFNI CGCG 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 844
BspPI GGATC 3 cut(s) 237, 635, 952
BspT104I TTCGAA 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 159
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 4 cut(s) 229, 627, 664, 944
BssSI CACGAG 1 cut(s) 149
Bst2BI CACGAG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 157, 931, 1005
Bst6I CTCTTC 2 cut(s) 24, 38
BstAPI GCANNNNNTGC 1 cut(s) 755
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 3 cut(s) 426, 502, 612
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 2 cut(s) 217, 420
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 860
BstKTI GATC 4 cut(s) 232, 630, 667, 947
BstMAI GTCTC 3 cut(s) 152, 235, 820
BstMBI GATC 4 cut(s) 229, 627, 664, 944
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 1 cut(s) 755
BstNSI RCATGY 1 cut(s) 858
BstSFI CTRYAG 2 cut(s) 784, 840
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 6 cut(s) 329, 332, 671, 761, 791, 940
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 2 cut(s) 229, 944
BstYI RGATCY 2 cut(s) 229, 944
BsuI GTATCC 1 cut(s) 882
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 2 cut(s) 217, 420
BtsI GCAGTG 4 cut(s) 196, 695, 753, 963
BtsIMutI CAGTG 6 cut(s) 196, 591, 695, 753, 927, 963
Cac8I GCNNGC 1 cut(s) 445
CaiI CAGNNNCTG 2 cut(s) 593, 755
CfoI GCGC 1 cut(s) 860
Cfr13I GGNCC 2 cut(s) 4, 134
Cfr42I CCGCGG 1 cut(s) 130
Csp6I GTAC 2 cut(s) 499, 1006
CviAII CATG 4 cut(s) 59, 266, 850, 855
CviQI GTAC 2 cut(s) 499, 1006
DdeI CTNAG 3 cut(s) 426, 502, 612
DpnI GATC 4 cut(s) 231, 629, 666, 946
DpnII GATC 4 cut(s) 229, 627, 664, 944
Eam1104I CTCTTC 2 cut(s) 24, 38
EarI CTCTTC 2 cut(s) 24, 38
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 4, 134
EcoO109I RGGNCCY 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 4 cut(s) 62, 269, 853, 858
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 4 cut(s) 58, 265, 849, 854
Fnu4HI GCNGC 6 cut(s) 318, 321, 660, 750, 780, 954
FokI GGATG 2 cut(s) 204, 407
Fsp4HI GCNGC 6 cut(s) 318, 321, 660, 750, 780, 954
FspAI RTGCGCAY 1 cut(s) 859
FspBI CTAG 1 cut(s) 668
FspI TGCGCA 1 cut(s) 859
GlaI GCGC 1 cut(s) 859
GluI GCNGC 6 cut(s) 318, 321, 660, 750, 780, 954
GsuI CTGGAG 1 cut(s) 930
HhaI GCGC 1 cut(s) 860
Hin1II CATG 4 cut(s) 62, 269, 853, 858
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HinfI GANTC 3 cut(s) 262, 463, 813
HphI GGTGA 2 cut(s) 66, 319
Hpy188I TCNGA 7 cut(s) 116, 203, 512, 615, 826, 876, 901
Hpy188III TCNNGA 4 cut(s) 151, 467, 641, 668
HpyAV CCTTC 5 cut(s) 64, 93, 232, 268, 908
HpyCH4III ACNGT 3 cut(s) 157, 931, 1005
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 6 cut(s) 367, 608, 659, 701, 779, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 755
HpyF3I CTNAG 3 cut(s) 426, 502, 612
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 4 cut(s) 62, 269, 853, 858
HspAI GCGC 1 cut(s) 858
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 4 cut(s) 229, 627, 664, 944
LmnI GCTCC 3 cut(s) 314, 679, 1002
LpnPI CCDG 8 cut(s) 81, 219, 222, 366, 429, 480, 579, 894
Lsp1109I GCAGC 6 cut(s) 329, 332, 671, 761, 791, 940
LweI GCATC 2 cut(s) 429, 869
MaeI CTAG 1 cut(s) 668
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 3 cut(s) 151, 589, 596
MalI GATC 4 cut(s) 231, 629, 666, 946
MboI GATC 4 cut(s) 229, 627, 664, 944
MboII GAAGA 8 cut(s) 11, 14, 25, 42, 182, 271, 685, 704
MflI RGATCY 2 cut(s) 229, 944
MluCI AATT 5 cut(s) 432, 568, 728, 790, 879
MlyI GAGTC 1 cut(s) 822
MmeI TCCRAC 2 cut(s) 490, 718
MnlI CCTC 7 cut(s) 125, 293, 481, 621, 829, 832, 911
MslI CAYNNNNRTG 2 cut(s) 603, 767
MspA1I CMGCKG 2 cut(s) 129, 662
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 755
NdeII GATC 4 cut(s) 229, 627, 664, 944
NlaIII CATG 4 cut(s) 62, 269, 853, 858
NmuCI GTSAC 3 cut(s) 151, 589, 596
NsbI TGCGCA 1 cut(s) 859
NspI RCATGY 1 cut(s) 858
NspV TTCGAA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PctI GAATGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 262, 463
PkrI GCNGC 6 cut(s) 319, 322, 661, 751, 781, 955
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 134
PspPI GGNCC 2 cut(s) 4, 134
PspPPI RGGWCCY 1 cut(s) 134
PstI CTGCAG 1 cut(s) 844
PstNI CAGNNNCTG 2 cut(s) 593, 755
PsuI RGATCY 2 cut(s) 229, 944
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 2 cut(s) 500, 1007
RsaNI GTAC 2 cut(s) 499, 1006
RseI CAYNNNNRTG 2 cut(s) 603, 767
SacII CCGCGG 1 cut(s) 130
SatI GCNGC 6 cut(s) 318, 321, 660, 750, 780, 954
Sau3AI GATC 4 cut(s) 229, 627, 664, 944
Sau96I GGNCC 2 cut(s) 4, 134
SchI GAGTC 1 cut(s) 822
SfaNI GCATC 2 cut(s) 429, 869
SfcI CTRYAG 2 cut(s) 784, 840
Sfr303I CCGCGG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 250
SgrBI CCGCGG 1 cut(s) 130
SinI GGWCC 2 cut(s) 4, 134
SmiMI CAYNNNNRTG 2 cut(s) 603, 767
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 5 cut(s) 432, 568, 728, 790, 879
SsiI CCGC 4 cut(s) 102, 127, 129, 187
SspMI CTAG 1 cut(s) 668
TaaI ACNGT 3 cut(s) 157, 931, 1005
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 195, 250
TaqII GACCGA 2 cut(s) 134, 182
TasI AATT 5 cut(s) 432, 568, 728, 790, 879
TfiI GAWTC 2 cut(s) 262, 463
TscAI CASTG 6 cut(s) 196, 598, 695, 760, 934, 970
TseFI GTSAC 3 cut(s) 151, 589, 596
TseI GCWGC 6 cut(s) 317, 320, 659, 749, 779, 953
Tsp45I GTSAC 3 cut(s) 151, 589, 596
TspDTI ATGAA 6 cut(s) 25, 254, 404, 641, 923, 976
TspRI CASTG 6 cut(s) 196, 598, 695, 760, 934, 970
VpaK11BI GGWCC 2 cut(s) 4, 134
XapI RAATTY 1 cut(s) 790
XbaI TCTAGA 1 cut(s) 667
XceI RCATGY 1 cut(s) 858
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.