AT4G26200

1-aminocyclopropane-1-carboxylate synthase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13275200 .. 13277188
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26200.1

Sequence Viewer

Length: 1344 bp
ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACAACGTCGAGCTTTCTCGAGTGGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTACGACGAAAATCCTTACGACGAATCTCATAACCCTTCCGGTGTCATCCAAATGGGTCTCGCTGAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAGAAGAATCCAGAAGGTTCGATGTGGGGATCAAAAGGAGCTCCTGGGTTCCGTGAAAACGCATTGTTTCAAGACTACCACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGTTTCATGGAACAGATTCGAGGAGGCAAAGCTAGATTTGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACCGCCGCTAACGAACTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTGAAAATAGTACCCATCCACTGCGACAGCTCGAACCATTTCCAGATAACCCCGGAGGCGCTAGAGTCGGCGTACCAAACGGCTCGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGGGCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAATATTCACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACAAGCGTTGCCGAGATCGTAGAAAACATAGATGACGTGTCAGTAAAGGAACGAGTTCACATCGTCTACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATACTCGTACAACGATAATGTTGTTCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAGACACAACATATGCTGGCTTCTATGTTGTCGGATGAGGAGTTTACGGAGAAGTACATTAGGATAAACCGGGAAAGACTTAGAAGACGGTACGATACCATTGTGGAAGGGCTTAAGAAGGCAGGGATTGAGTGTTTGAAAGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTGCTCGAAAAGAAAACTAAAGACGGCGAGCTCCAGCTTTGGGATGTGATCTTAAAGGAGCTGAACCTGAATATATCTCCGGGATCTTCGTGCCACTGCTCGGAGGTCGGATGGTTTAGGGTTTGTTTTGCTAATATGAGTGAGAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTCATGGACCGACGAAGGAGGTTTTGA

Protein Analysis

447

Amino Acids

50.66

Weight (kDa)

5.94

Isoelectric Point (pI)

48.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 55 - 437 4.8e-95 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AccI GTMKAC 1 cut(s) 840
AccII CGCG 2 cut(s) 608, 879
AciI CCGC 5 cut(s) 65, 396, 408, 411, 877
AclWI GGATC 6 cut(s) 259, 368, 392, 437, 864, 1228
AcsI RAATTY 1 cut(s) 1126
AcyI GRCGYC 1 cut(s) 453
AfaI GTAC 7 cut(s) 98, 528, 590, 708, 899, 1013, 1049
AfiI CCNNNNNNNGG 4 cut(s) 658, 676, 1177, 1237
AflII CTTAAG 1 cut(s) 1070
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 4 cut(s) 209, 293, 1096, 1303
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 3 cut(s) 265, 481, 868
AjuI GAANNNNNNNTTGG 4 cut(s) 663, 695, 707, 739
AluBI AGCT 9 cut(s) 52, 116, 263, 365, 546, 939, 1168, 1174, 1198
AluI AGCT 9 cut(s) 52, 116, 263, 365, 546, 939, 1168, 1174, 1198
Alw21I GWGCWC 3 cut(s) 265, 633, 1170
Alw26I GTCTC 7 cut(s) 179, 196, 311, 733, 851, 955, 960
AlwI GGATC 6 cut(s) 259, 368, 392, 437, 864, 1228
Ama87I CYCGRG 1 cut(s) 57
ApoI RAATTY 1 cut(s) 1126
Asp700I GAANNNNTTC 3 cut(s) 348, 554, 828
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 2 cut(s) 667, 1324
AsuC2I CCSGG 3 cut(s) 569, 1028, 1218
AsuHPI GGTGA 2 cut(s) 84, 385
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 2 cut(s) 667, 1324
BaeI ACNNNNGTAYC 2 cut(s) 1044, 1077
BanII GRGCYC 2 cut(s) 265, 1170
BauI CACGAG 1 cut(s) 600
BbsI GAAGAC 4 cut(s) 93, 748, 857, 1048
Bbv12I GWGCWC 3 cut(s) 265, 633, 1170
BccI CCATC 5 cut(s) 13, 498, 539, 652, 1242
BceAI ACGGC 3 cut(s) 97, 612, 1177
BciT130I CCWGG 3 cut(s) 267, 483, 870
BcnI CCSGG 3 cut(s) 569, 1028, 1218
BcoDI GTCTC 7 cut(s) 179, 196, 311, 733, 851, 955, 960
BfaI CTAG 5 cut(s) 333, 366, 461, 578, 683
BfmI CTRYAG 1 cut(s) 841
BfoI RGCGCY 1 cut(s) 578
BfrI CTTAAG 1 cut(s) 1070
BglII AGATCT 2 cut(s) 688, 738
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 6 cut(s) 267, 483, 569, 870, 1028, 1218
Bme18I GGWCC 2 cut(s) 667, 1324
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 2 cut(s) 667, 1324
BmiI GGNNCC 3 cut(s) 272, 403, 751
BmrFI CCNGG 6 cut(s) 267, 483, 569, 870, 1028, 1218
BpiI GAAGAC 4 cut(s) 93, 748, 857, 1048
BplI GAGNNNNNCTC 4 cut(s) 615, 647, 728, 760
BpmI CTGGAG 1 cut(s) 1154
BpuMI CCSGG 3 cut(s) 569, 1028, 1218
BsaHI GRCGYC 1 cut(s) 453
BsaI GGTCTC 4 cut(s) 179, 196, 311, 733
BsaJI CCNNGG 6 cut(s) 266, 301, 327, 567, 622, 852
BsaWI WCCGGW 3 cut(s) 155, 381, 512
BsaXI ACNNNNNCTCC 6 cut(s) 734, 764, 833, 863, 1283, 1313
Bsc4I CCNNNNNNNGG 4 cut(s) 658, 676, 1177, 1237
Bse118I RCCGGY 1 cut(s) 104
BseBI CCWGG 3 cut(s) 267, 483, 870
BseDI CCNNGG 6 cut(s) 266, 301, 327, 567, 622, 852
BseGI GGATG 7 cut(s) 162, 531, 936, 997, 1128, 1186, 1253
BseLI CCNNNNNNNGG 4 cut(s) 658, 676, 1177, 1237
BseMII CTCAG 3 cut(s) 171, 744, 971
BseRI GAGGAG 3 cut(s) 369, 639, 1010
Bsh1236I CGCG 2 cut(s) 608, 879
BsiHKAI GWGCWC 3 cut(s) 265, 633, 1170
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 9 cut(s) 105, 156, 382, 399, 513, 569, 747, 1027, 1217
BsiWI CGTACG 1 cut(s) 706
BslI CCNNNNNNNGG 4 cut(s) 658, 676, 1177, 1237
BsmAI GTCTC 7 cut(s) 179, 196, 311, 733, 851, 955, 960
BsmBI CGTCTC 1 cut(s) 960
Bso31I GGTCTC 4 cut(s) 179, 196, 311, 733
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 265, 633, 1170
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 5 cut(s) 65, 396, 408, 411, 877
BspCNI CTCAG 3 cut(s) 172, 743, 970
BspFNI CGCG 2 cut(s) 608, 879
BspLI GGNNCC 3 cut(s) 272, 403, 751
BspPI GGATC 6 cut(s) 259, 368, 392, 437, 864, 1228
BspTI CTTAAG 1 cut(s) 1070
BspTNI GGTCTC 4 cut(s) 179, 196, 311, 733
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 6 cut(s) 266, 301, 327, 567, 622, 852
BssNI GRCGYC 1 cut(s) 453
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 2 cut(s) 327, 852
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 3 cut(s) 267, 483, 870
Bst4CI ACNGT 6 cut(s) 96, 305, 474, 667, 845, 1047
Bst6I CTCTTC 1 cut(s) 1298
BstACI GRCGYC 1 cut(s) 453
BstAFI CTTAAG 1 cut(s) 1070
BstC8I GCNNGC 3 cut(s) 106, 975, 1166
BstDEI CTNAG 4 cut(s) 180, 730, 957, 1037
BstDSI CCRYGG 2 cut(s) 301, 327
BstF5I GGATG 7 cut(s) 162, 531, 936, 997, 1128, 1186, 1253
BstFNI CGCG 2 cut(s) 608, 879
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 1 cut(s) 577
BstMAI GTCTC 7 cut(s) 179, 196, 311, 733, 851, 955, 960
BstMWI GCNNNNNNNGC 2 cut(s) 410, 605
BstNI CCWGG 3 cut(s) 267, 483, 870
BstSCI CCNGG 6 cut(s) 265, 481, 567, 868, 1026, 1216
BstSFI CTRYAG 1 cut(s) 841
BstUI CGCG 2 cut(s) 608, 879
BstV2I GAAGAC 4 cut(s) 93, 748, 857, 1048
BstX2I RGATCY 4 cut(s) 688, 738, 856, 1220
BstYI RGATCY 4 cut(s) 688, 738, 856, 1220
BtgI CCRYGG 2 cut(s) 301, 327
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 7 cut(s) 162, 531, 936, 997, 1128, 1186, 1253
BtsI GCAGTG 2 cut(s) 535, 1231
BtsIMutI CAGTG 2 cut(s) 535, 1231
Cac8I GCNNGC 3 cut(s) 106, 975, 1166
CfoI GCGC 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 667, 1324
CseI GACGC 2 cut(s) 461, 614
Csp6I GTAC 7 cut(s) 97, 527, 589, 707, 898, 1012, 1048
CviAII CATG 5 cut(s) 328, 340, 761, 1313, 1321
CviQI GTAC 7 cut(s) 97, 527, 589, 707, 898, 1012, 1048
DdeI CTNAG 4 cut(s) 180, 730, 957, 1037
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 1298
EarI CTCTTC 1 cut(s) 1298
Ecl136II GAGCTC 2 cut(s) 263, 1168
Eco130I CCWWGG 2 cut(s) 327, 852
Eco24I GRGCYC 2 cut(s) 265, 1170
Eco31I GGTCTC 4 cut(s) 179, 196, 311, 733
Eco47I GGWCC 2 cut(s) 667, 1324
Eco53kI GAGCTC 2 cut(s) 263, 1168
Eco88I CYCGRG 1 cut(s) 57
EcoICRI GAGCTC 2 cut(s) 263, 1168
EcoRII CCWGG 3 cut(s) 265, 481, 868
EcoT14I CCWWGG 2 cut(s) 327, 852
EcoT38I GRGCYC 2 cut(s) 265, 1170
ErhI CCWWGG 2 cut(s) 327, 852
Esp3I CGTCTC 1 cut(s) 960
FaeI CATG 5 cut(s) 331, 343, 764, 1316, 1324
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FatI CATG 5 cut(s) 327, 339, 760, 1312, 1320
FauNDI CATATG 1 cut(s) 969
FblI GTMKAC 1 cut(s) 840
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 7 cut(s) 149, 518, 943, 1004, 1135, 1193, 1260
FriOI GRGCYC 2 cut(s) 265, 1170
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 5 cut(s) 333, 366, 461, 578, 683
GlaI GCGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 1154
HaeII RGCGCY 1 cut(s) 578
HapII CCGG 9 cut(s) 105, 156, 382, 399, 513, 569, 747, 1027, 1217
HgaI GACGC 2 cut(s) 461, 614
HhaI GCGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 453
Hin1II CATG 5 cut(s) 331, 343, 764, 1316, 1324
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HindIII AAGCTT 1 cut(s) 114
HinfI GANTC 8 cut(s) 89, 140, 184, 229, 349, 486, 581, 618
HpaII CCGG 9 cut(s) 105, 156, 382, 399, 513, 569, 747, 1027, 1217
HphI GGTGA 2 cut(s) 84, 385
Hpy166II GTNNAC 4 cut(s) 774, 832, 841, 1002
Hpy188III TCNNGA 8 cut(s) 57, 206, 233, 293, 377, 559, 602, 683
Hpy8I GTNNAC 4 cut(s) 774, 832, 841, 1002
Hpy99I CGWCG 6 cut(s) 50, 125, 140, 455, 667, 1332
HpyAV CCTTC 8 cut(s) 162, 230, 467, 670, 921, 1058, 1069, 1326
HpyCH4III ACNGT 6 cut(s) 96, 305, 474, 667, 845, 1047
HpyCH4IV ACGT 2 cut(s) 45, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 605
HpyF3I CTNAG 4 cut(s) 180, 730, 957, 1037
HpySE526I ACGT 2 cut(s) 45, 810
Hsp92I GRCGYC 1 cut(s) 453
Hsp92II CATG 5 cut(s) 331, 343, 764, 1316, 1324
HspAI GCGC 1 cut(s) 575
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
LmnI GCTCC 6 cut(s) 260, 268, 401, 755, 1173, 1195
MaeI CTAG 5 cut(s) 333, 366, 461, 578, 683
MaeII ACGT 2 cut(s) 45, 810
MaeIII GTNAC 1 cut(s) 602
MflI RGATCY 4 cut(s) 688, 738, 856, 1220
MhlI GDGCHC 3 cut(s) 265, 633, 1170
MluCI AATT 1 cut(s) 1126
MlyI GAGTC 3 cut(s) 83, 590, 627
MmeI TCCRAC 3 cut(s) 969, 1100, 1225
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 3 cut(s) 348, 554, 828
MseI TTAA 3 cut(s) 425, 1071, 1190
MslI CAYNNNNRTG 1 cut(s) 167
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 9 cut(s) 105, 156, 382, 399, 513, 569, 747, 1027, 1217
MspR9I CCNGG 6 cut(s) 267, 483, 569, 870, 1028, 1218
MvaI CCWGG 3 cut(s) 267, 483, 870
MvnI CGCG 2 cut(s) 608, 879
MwoI GCNNNNNNNGC 2 cut(s) 410, 605
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 3 cut(s) 569, 1028, 1218
NcoI CCATGG 1 cut(s) 327
NdeI CATATG 1 cut(s) 969
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 5 cut(s) 331, 343, 764, 1316, 1324
NlaIV GGNNCC 3 cut(s) 272, 403, 751
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 602
PaeR7I CTCGAG 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 950
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 3 cut(s) 348, 554, 828
PfeI GAWTC 5 cut(s) 140, 184, 229, 349, 486
Pfl23II CGTACG 1 cut(s) 706
PfoI TCCNGGA 2 cut(s) 481, 1216
PkrI GCNGC 1 cut(s) 412
PleI GAGTC 3 cut(s) 83, 589, 626
PpsI GAGTC 3 cut(s) 83, 589, 626
Psp124BI GAGCTC 2 cut(s) 265, 1170
Psp6I CCWGG 3 cut(s) 265, 481, 868
PspGI CCWGG 3 cut(s) 265, 481, 868
PspLI CGTACG 1 cut(s) 706
PspN4I GGNNCC 3 cut(s) 272, 403, 751
PspPI GGNCC 2 cut(s) 667, 1324
PsuI RGATCY 4 cut(s) 688, 738, 856, 1220
RsaI GTAC 7 cut(s) 98, 528, 590, 708, 899, 1013, 1049
RsaNI GTAC 7 cut(s) 97, 527, 589, 707, 898, 1012, 1048
RseI CAYNNNNRTG 1 cut(s) 167
SacI GAGCTC 2 cut(s) 265, 1170
SaqAI TTAA 3 cut(s) 425, 1071, 1190
SatI GCNGC 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 667, 1324
SchI GAGTC 3 cut(s) 83, 590, 627
ScrFI CCNGG 6 cut(s) 267, 483, 569, 870, 1028, 1218
SduI GDGCHC 3 cut(s) 265, 633, 1170
SfcI CTRYAG 1 cut(s) 841
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 667, 1324
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 167
SmlI CTYRAG 2 cut(s) 57, 1070
SmoI CTYRAG 2 cut(s) 57, 1070
Sse9I AATT 1 cut(s) 1126
SsiI CCGC 5 cut(s) 65, 396, 408, 411, 877
SspI AATATT 1 cut(s) 718
SspMI CTAG 5 cut(s) 333, 366, 461, 578, 683
SstI GAGCTC 2 cut(s) 265, 1170
StyD4I CCNGG 6 cut(s) 265, 481, 567, 868, 1026, 1216
StyI CCWWGG 2 cut(s) 327, 852
TaaI ACNGT 6 cut(s) 96, 305, 474, 667, 845, 1047
TaiI ACGT 2 cut(s) 48, 813
TaqI TCGA 9 cut(s) 48, 58, 242, 352, 489, 548, 647, 935, 1143
TaqII GACCGA 1 cut(s) 1341
TasI AATT 1 cut(s) 1126
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 5 cut(s) 140, 184, 229, 349, 486
Tru1I TTAA 3 cut(s) 425, 1071, 1190
Tru9I TTAA 3 cut(s) 425, 1071, 1190
TscAI CASTG 2 cut(s) 542, 1238
TseFI GTSAC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 602
TspDTI ATGAA 4 cut(s) 328, 421, 1139, 1309
TspGWI ACGGA 3 cut(s) 263, 742, 1019
TspRI CASTG 2 cut(s) 542, 1238
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 2 cut(s) 667, 1324
XapI RAATTY 1 cut(s) 1126
XbaI TCTAGA 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 840
XmnI GAANNNNTTC 3 cut(s) 348, 554, 828
XspI CTAG 5 cut(s) 333, 366, 461, 578, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.