Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

3915056 .. 3916731

Gene Structure 1676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGGTATAAAGATTGAGCAGCAGCAGCAGCCTTCCGTTGAGCTATCAAAAATAGCTGTTTCTGATACTCATGGAGAAGACTCTCCATACTTTGCAGGCTGGAAAGCATATGACGAAAACCCTTACGATGAATCAAGCAACCCATCAGGAGTCATACAGATGGGACTGGCTGAGAATCAAGTAAGTGCTCAACAAAATCCAGAAGAAGAAGATTGCTTTTTTTTTTTTTTTTTTTTTATTTTTTATTTTAAAGAAACCTTGGTGGTACGAGAGAATTTTATTGATAGGGTTTCATTCGATGTGTTGGAAAAATACTTGAAAGAGCATTCAGAAGCTTCCAACTGGGGAGCAAAGGCATCAAAAGGAGTGTCTGGCTTTAGAGAAAATGCCTTGTTTCAAGATTACCATGGTCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTCATGGAACAAATAAGAGGAGGAAGAGCCAAATTTGACCCTGATAGAATAGTCCTAACTGCAGGAGCAACTGCAGCCAATGAGCTATTAACTTTCATTATAGCTGATCCTGGTGATGCTTTGCTTGTTCCAACCCCATACTATCCAGGACAGTCTGGCATTATTTTGTCAAAGTGTCAAAAACTAATTATGCCAACTCAAATTTTGTTTTACAGATTTGATAGAGATTTGAGGTGGAGGACTGGTGTGAATATTGTGCCAATCCACTGTGGCAGCTCAAACAATTTCCAAATCACTCCTCAAGCTTTGGATGCTGCATACAAAGAGGCGGAAGCCAAGAACATGAGAGTGAGAGGTGTACTCATCACAAATCCTTCCAACCCTTTAGGTGCAACAGTCCAAAGGGCAGTCCTTGAAGAGATTCTTGATTTTGTCACCCGGGAAAACATCCATCTTGTATCTGATGAAATTTACTCGGGCTCTGCCTTCTCATCCACCGAGTTCATAAGCATTGCAGAGATTCTTGAAGACAGGCAGTACAAGGATGCAGAAAGAGTCCACATAGTTTATAGCCTCTCTAAAGACCTAGGCCTTCCGGGTTTTCGTATTGGCACCGTGTACTCTTACAACGACAAGGTTGTGACAACAGCAAGAAGGATGTCTAGCTTCACCCTGATATCTTCTCAGACACAACATCTCTTGGCTTCCATGTTGTCTGAGAAGGAATTCACTGAAAATTACATAAAGACAAATAGAGAGAGACTGAGGAAGAGATACGACATGATGATCGAGGGTTTGAAGAAATCGGGGATTGAGTGTTTGACAGGCAATGCCGGGTTGTTTTGCTGGATGAATTTAAGTCCACTTTTGGAGAAACCAACAAGAGAAGGTGAATTGGCTCTTTGGGACTCTATGCTGTATGAAGTGAAGCTAAATATATCTCCTGGTTCTTCATGCCACTGCTCTGAACCAGGCTGGTTTAGGGTTTGTTTTGCAAACATGAGTGAGCAGACACTTGAAGTTGCTCTTAAGCGAATACATAATTTTATGGAACAAAGAAAGAGAAGCAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

506

Amino Acids

57.42

Weight (kDa)

5.75

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1052
AciI	CCGC	1 cut(s)	770
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	6 cut(s)	274, 473, 642, 909, 1166, 1294
AfaI	GTAC	4 cut(s)	267, 801, 980, 1061
AflII	CTTAAG	1 cut(s)	1469
AgsI	TTSAA	6 cut(s)	319, 398, 857, 968, 1240, 1460
AjnI	CCWGG	4 cut(s)	550, 586, 1384, 1411
AluBI	AGCT	9 cut(s)	43, 56, 335, 526, 545, 717, 746, 1107, 1372
AluI	AGCT	9 cut(s)	43, 56, 335, 526, 545, 717, 746, 1107, 1372
Alw21I	GWGCWC	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	1195
AlwI	GGATC	1 cut(s)	542
Ama87I	CYCGRG	2 cut(s)	879, 916
AoxI	GGCC	1 cut(s)	1030
ApeKI	GCWGC	7 cut(s)	19, 22, 25, 28, 515, 714, 755
ApoI	RAATTY	6 cut(s)	274, 473, 642, 909, 1166, 1294
ArsI	GACNNNNNNTTYG	2 cut(s)	353, 385
Asp700I	GAANNNNTTC	2 cut(s)	861, 1166
AspA2I	CCTAGG	1 cut(s)	1027
AsuC2I	CCSGG	4 cut(s)	880, 881, 1038, 1276
AsuHPI	GGTGA	4 cut(s)	566, 868, 1102, 1343
AvaI	CYCGRG	2 cut(s)	879, 916
AvrII	CCTAGG	1 cut(s)	1027
BanI	GGYRCC	1 cut(s)	1052
BanII	GRGCYC	1 cut(s)	923
BbsI	GAAGAC	2 cut(s)	84, 975
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	7 cut(s)	31, 34, 37, 40, 527, 726, 742
BccI	CCATC	3 cut(s)	151, 154, 900
BciT130I	CCWGG	4 cut(s)	552, 588, 1386, 1413
BcnI	CCSGG	4 cut(s)	880, 881, 1038, 1276
BcoDI	GTCTC	1 cut(s)	1195
BfaI	CTAG	2 cut(s)	1028, 1104
BfmI	CTRYAG	2 cut(s)	501, 513
BfrI	CTTAAG	1 cut(s)	1469
BisI	GCNGC	7 cut(s)	20, 23, 26, 29, 516, 715, 756
BlnI	CCTAGG	1 cut(s)	1027
BlsI	GCNGC	7 cut(s)	21, 24, 27, 30, 517, 716, 757
Bme1390I	CCNGG	8 cut(s)	552, 588, 880, 881, 1038, 1276, 1386, 1413
BmeT110I	CYCGRG	2 cut(s)	879, 916
BmiI	GGNNCC	1 cut(s)	1054
BmrFI	CCNGG	8 cut(s)	552, 588, 880, 881, 1038, 1276, 1386, 1413
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	4 cut(s)	365, 547, 742, 976
BmuI	ACTGGG	1 cut(s)	352
BpiI	GAAGAC	2 cut(s)	84, 975
BplI	GAGNNNNNCTC	2 cut(s)	786, 818
BpuEI	CTTGAG	1 cut(s)	726
BpuMI	CCSGG	4 cut(s)	880, 881, 1038, 1276
BsaJI	CCNNGG	4 cut(s)	258, 406, 879, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	670, 700
Bse1I	ACTGG	3 cut(s)	171, 347, 688
Bse3DI	GCAATG	3 cut(s)	438, 951, 1276
BseBI	CCWGG	4 cut(s)	552, 588, 1386, 1413
BseDI	CCNNGG	4 cut(s)	258, 406, 879, 1027
BseGI	GGATG	6 cut(s)	757, 888, 932, 991, 1104, 1296
BseMI	GCAATG	3 cut(s)	438, 951, 1276
BseMII	CTCAG	4 cut(s)	162, 1139, 1149, 1196
BseNI	ACTGG	3 cut(s)	171, 347, 688
BseRI	GAGGAG	2 cut(s)	474, 729
BseXI	GCAGC	7 cut(s)	31, 34, 37, 40, 527, 726, 742
BshFI	GGCC	1 cut(s)	1032
BshNI	GGYRCC	1 cut(s)	1052
BsiHKAI	GWGCWC	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	879, 916
BsiSI	CCGG	3 cut(s)	880, 1037, 1275
BslFI	GGGAC	2 cut(s)	177, 1361
BsmAI	GTCTC	1 cut(s)	1195
BsmFI	GGGAC	2 cut(s)	177, 1361
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	1032
BsoBI	CYCGRG	2 cut(s)	879, 916
Bsp1286I	GDGCHC	2 cut(s)	190, 923
Bsp143I	GATC	2 cut(s)	547, 1227
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	770
BspANI	GGCC	1 cut(s)	1032
BspCNI	CTCAG	4 cut(s)	163, 1138, 1150, 1197
BspLI	GGNNCC	1 cut(s)	1054
BspMAI	CTGCAG	2 cut(s)	505, 517
BspPI	GGATC	1 cut(s)	542
BspQI	GCTCTTC	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	1052
BspTI	CTTAAG	1 cut(s)	1469
BsrDI	GCAATG	3 cut(s)	438, 951, 1276
BsrI	ACTGG	3 cut(s)	171, 347, 688
BssECI	CCNNGG	4 cut(s)	258, 406, 879, 1027
BssMI	GATC	2 cut(s)	547, 1227
BssT1I	CCWWGG	3 cut(s)	258, 406, 1027
Bst2UI	CCWGG	4 cut(s)	552, 588, 1386, 1413
Bst4CI	ACNGT	4 cut(s)	594, 710, 838, 1057
Bst6I	CTCTTC	3 cut(s)	460, 852, 1205
BstAFI	CTTAAG	1 cut(s)	1469
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	4 cut(s)	171, 1125, 1158, 1205
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	6 cut(s)	757, 888, 932, 991, 1104, 1296
BstKTI	GATC	2 cut(s)	550, 1230
BstMAI	GTCTC	1 cut(s)	1195
BstMBI	GATC	2 cut(s)	547, 1227
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 28, 515, 752
BstNI	CCWGG	4 cut(s)	552, 588, 1386, 1413
BstSCI	CCNGG	8 cut(s)	550, 586, 878, 879, 1036, 1274, 1384, 1411
BstSFI	CTRYAG	2 cut(s)	501, 513
BstV1I	GCAGC	7 cut(s)	31, 34, 37, 40, 527, 726, 742
BstV2I	GAAGAC	2 cut(s)	84, 975
BsuRI	GGCC	1 cut(s)	1032
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	6 cut(s)	757, 888, 932, 991, 1104, 1296
BtsI	GCAGTG	1 cut(s)	1399
BtsIMutI	CAGTG	3 cut(s)	706, 1170, 1399
Cac8I	GCNNGC	1 cut(s)	97
Cfr9I	CCCGGG	1 cut(s)	879
Csp6I	GTAC	4 cut(s)	266, 800, 979, 1060
CviAII	CATG	8 cut(s)	71, 407, 445, 784, 1150, 1222, 1395, 1441
CviQI	GTAC	4 cut(s)	266, 800, 979, 1060
DdeI	CTNAG	4 cut(s)	171, 1125, 1158, 1205
DpnI	GATC	2 cut(s)	549, 1229
DpnII	GATC	2 cut(s)	547, 1227
DraI	TTTAAA	1 cut(s)	250
Eam1104I	CTCTTC	3 cut(s)	460, 852, 1205
EarI	CTCTTC	3 cut(s)	460, 852, 1205
EciI	GGCGGA	1 cut(s)	785
Eco130I	CCWWGG	3 cut(s)	258, 406, 1027
Eco147I	AGGCCT	1 cut(s)	1032
Eco24I	GRGCYC	1 cut(s)	923
Eco32I	GATATC	1 cut(s)	1119
Eco88I	CYCGRG	2 cut(s)	879, 916
EcoRI	GAATTC	1 cut(s)	1166
EcoRII	CCWGG	4 cut(s)	550, 586, 1384, 1411
EcoRV	GATATC	1 cut(s)	1119
EcoT14I	CCWWGG	3 cut(s)	258, 406, 1027
EcoT38I	GRGCYC	1 cut(s)	923
ErhI	CCWWGG	3 cut(s)	258, 406, 1027
FaeI	CATG	8 cut(s)	74, 410, 448, 787, 1153, 1225, 1398, 1444
FalI	AAGNNNNNCTT	4 cut(s)	849, 881, 1452, 1484
FaqI	GGGAC	2 cut(s)	177, 1361
FatI	CATG	8 cut(s)	70, 406, 444, 783, 1149, 1221, 1394, 1440
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 516, 715, 756
FokI	GGATG	6 cut(s)	764, 875, 919, 998, 1111, 1303
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	7 cut(s)	20, 23, 26, 29, 516, 715, 756
FspBI	CTAG	2 cut(s)	1028, 1104
GluI	GCNGC	7 cut(s)	20, 23, 26, 29, 516, 715, 756
HaeIII	GGCC	1 cut(s)	1032
HapII	CCGG	3 cut(s)	880, 1037, 1275
Hin1II	CATG	8 cut(s)	74, 410, 448, 787, 1153, 1225, 1398, 1444
HindIII	AAGCTT	2 cut(s)	333, 744
HinfI	GANTC	8 cut(s)	80, 131, 150, 175, 862, 961, 996, 1349
HpaII	CCGG	3 cut(s)	880, 1037, 1275
HphI	GGTGA	4 cut(s)	566, 868, 1102, 1343
Hpy166II	GTNNAC	4 cut(s)	800, 1000, 1060, 1304
Hpy188I	TCNGA	7 cut(s)	64, 331, 425, 904, 1128, 1159, 1408
Hpy188III	TCNNGA	5 cut(s)	147, 200, 398, 866, 965
Hpy8I	GTNNAC	4 cut(s)	800, 1000, 1060, 1304
HpyAV	CCTTC	7 cut(s)	42, 825, 937, 1043, 1089, 1156, 1322
HpyCH4III	ACNGT	4 cut(s)	594, 710, 838, 1057
HpyCH4V	TGCA	8 cut(s)	95, 503, 515, 758, 833, 956, 989, 1436
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 28, 515, 752
HpyF3I	CTNAG	4 cut(s)	171, 1125, 1158, 1205
Hsp92II	CATG	8 cut(s)	74, 410, 448, 787, 1153, 1225, 1398, 1444
Kzo9I	GATC	2 cut(s)	547, 1227
LguI	GCTCTTC	1 cut(s)	460
LmnI	GCTCC	2 cut(s)	347, 506
Lsp1109I	GCAGC	7 cut(s)	31, 34, 37, 40, 527, 726, 742
LweI	GCATC	4 cut(s)	365, 547, 742, 976
MaeI	CTAG	2 cut(s)	1028, 1104
MaeIII	GTNAC	2 cut(s)	874, 1081
MalI	GATC	2 cut(s)	549, 1229
MboI	GATC	2 cut(s)	547, 1227
MhlI	GDGCHC	2 cut(s)	190, 923
MlyI	GAGTC	4 cut(s)	74, 159, 1005, 1343
MmeI	TCCRAC	4 cut(s)	285, 363, 596, 843
MroXI	GAANNNNTTC	2 cut(s)	861, 1166
MseI	TTAA	5 cut(s)	249, 530, 1298, 1470, 1516
MslI	CAYNNNNRTG	2 cut(s)	158, 788
MspCI	CTTAAG	1 cut(s)	1469
MspI	CCGG	3 cut(s)	880, 1037, 1275
MspR9I	CCNGG	8 cut(s)	552, 588, 880, 881, 1038, 1276, 1386, 1413
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	4 cut(s)	552, 588, 1386, 1413
MwoI	GCNNNNNNNGC	4 cut(s)	25, 28, 515, 752
NciI	CCSGG	4 cut(s)	880, 881, 1038, 1276
NcoI	CCATGG	1 cut(s)	406
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	547, 1227
NlaIII	CATG	8 cut(s)	74, 410, 448, 787, 1153, 1225, 1398, 1444
NlaIV	GGNNCC	1 cut(s)	1054
NmuCI	GTSAC	2 cut(s)	874, 1081
PceI	AGGCCT	1 cut(s)	1032
PciSI	GCTCTTC	1 cut(s)	460
PctI	GAATGC	1 cut(s)	325
PdmI	GAANNNNTTC	2 cut(s)	861, 1166
PfeI	GAWTC	4 cut(s)	131, 175, 862, 961
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	7 cut(s)	21, 24, 27, 30, 517, 716, 757
PleI	GAGTC	4 cut(s)	74, 158, 1004, 1343
PpsI	GAGTC	4 cut(s)	74, 158, 1004, 1343
Psp6I	CCWGG	4 cut(s)	550, 586, 1384, 1411
PspGI	CCWGG	4 cut(s)	550, 586, 1384, 1411
PspN4I	GGNNCC	1 cut(s)	1054
PstI	CTGCAG	2 cut(s)	505, 517
RsaI	GTAC	4 cut(s)	267, 801, 980, 1061
RsaNI	GTAC	4 cut(s)	266, 800, 979, 1060
RseI	CAYNNNNRTG	2 cut(s)	158, 788
SapI	GCTCTTC	1 cut(s)	460
SaqAI	TTAA	5 cut(s)	249, 530, 1298, 1470, 1516
SatI	GCNGC	7 cut(s)	20, 23, 26, 29, 516, 715, 756
Sau3AI	GATC	2 cut(s)	547, 1227
SchI	GAGTC	4 cut(s)	74, 159, 1005, 1343
ScrFI	CCNGG	8 cut(s)	552, 588, 880, 881, 1038, 1276, 1386, 1413
SduI	GDGCHC	2 cut(s)	190, 923
SfaNI	GCATC	4 cut(s)	365, 547, 742, 976
SfcI	CTRYAG	2 cut(s)	501, 513
SmaI	CCCGGG	1 cut(s)	881
SmiMI	CAYNNNNRTG	2 cut(s)	158, 788
SmlI	CTYRAG	2 cut(s)	741, 1469
SmoI	CTYRAG	2 cut(s)	741, 1469
SseBI	AGGCCT	1 cut(s)	1032
SsiI	CCGC	1 cut(s)	770
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	2 cut(s)	1028, 1104
StuI	AGGCCT	1 cut(s)	1032
StyD4I	CCNGG	8 cut(s)	550, 586, 878, 879, 1036, 1274, 1384, 1411
StyI	CCWWGG	3 cut(s)	258, 406, 1027
TaaI	ACNGT	4 cut(s)	594, 710, 838, 1057
TaqI	TCGA	2 cut(s)	297, 1230
TatI	WGTACW	3 cut(s)	799, 978, 1059
TfiI	GAWTC	4 cut(s)	131, 175, 862, 961
Tru1I	TTAA	5 cut(s)	249, 530, 1298, 1470, 1516
Tru9I	TTAA	5 cut(s)	249, 530, 1298, 1470, 1516
TscAI	CASTG	3 cut(s)	713, 1177, 1406
TseFI	GTSAC	2 cut(s)	874, 1081
TseI	GCWGC	7 cut(s)	19, 22, 25, 28, 515, 714, 755
Tsp45I	GTSAC	2 cut(s)	874, 1081
TspDTI	ATGAA	9 cut(s)	144, 282, 433, 526, 921, 934, 1307, 1377, 1383
TspGWI	ACGGA	1 cut(s)	25
TspMI	CCCGGG	1 cut(s)	879
TspRI	CASTG	3 cut(s)	713, 1177, 1406
Vha464I	CTTAAG	1 cut(s)	1469
XapI	RAATTY	6 cut(s)	274, 473, 642, 909, 1166, 1294
XmaI	CCCGGG	1 cut(s)	879
XmaJI	CCTAGG	1 cut(s)	1027
XmnI	GAANNNNTTC	2 cut(s)	861, 1166
XspI	CTAG	2 cut(s)	1028, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.