Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005381

Physical Location & Seq

Genomic Coordinates Reverse (-)

12798762 .. 12800473

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTATAGATATTGAGCAGCAGAAGCAGCCTTCTCCTCGGCTATCAAAAATAGCTGTTTCTGATACTCATGGAGAAGACTCTCCATACTTTGCAGGATGGAAAACTTATGATGAAAACCCTTATCATGAGTCAAGCAACCCATCTGGAGTCATACAAATGGGACTTGCAGAAAATCAAGTTTCGTTTGATCTGTTGGAAAACCACTTGGAAGAAAATTCCGAAGCCTCCACCTGGGGTTCAAAGGGATCAAAAGGAGTGTCTGGCTTTAGAGAAAATGCCTTATTTCAAGACTACCATGGCCTTTTGTCTTTCAGAAAGGCAATGGCAAGTTTTATGGAACAAATTAGAGGAGGAAGAGCCAAATTTGACCCTGCTAGGGTAGTCTTAACGGCGGGTGCAACTGCAGCAAATGAGCTATTGACTTTCGTCATAGCTGATCCCGGTGATGCTTTGCTTGTTCCAACCCCATATTATCCAGGGTTTGATAGAGATTTGAGGTGGAGGACTGGTGTGAACATTGTGCCAATTCACTGTGAAAGCTCAAACAACTTCCAGATTACTCCTCAAGCTTTAGAAGCTGCATACAAAGAGGCAGAAGCCAAGAACATGAGAGTGAGAGGGGTACTATTCACAAATCCATCAAACCCACTTGGTGCAACAATCCAAAGGACAGTCCTTGAAGAGATTCTTGATTTCGTCACCCAAAAAAACATCCATCTTGTCTCTGATGAAATCTACTCGGGATCTGCCTTCTCATCCTCCGAATTCATTAGTGTAGCAGAAATTCTTGAAGACAGGCAGTACAAGGATGCAGAAAGAGTCCACATTGTTTATAGTCTATCCAATGATCATCTTGGCCTTCCAGGCTTTCGAGTTGGCACTGTGTACTCTTACAATGACAAGGTAGTGACAACAGCAAGAAGAATGTCTAGCTTCACCTTGATATCTTCTCAAACACAACATCTCTTGGCTTCCATGTTATCTGACAAGGAATTCACGGGAAACTACATAAAGACAAATAGAGAGAGACTGAGGAGGAGATATGATATGATCGTCGAGGGTTTGAAAAAATCGGGATCGATCGAGTGTTTGAAAGGAAATGCTGGGTTGTTTTGCTGGATGAATTTAAGTCCATTTTTGGACGAACCAACAAGAGAATCTGAACTGACTCTTTGGGATTCCATGCTGCATGAAGTGAAGCTAAATATATCTCCAGGTTCTTCTTGTCATTGCTCTGAGCCAGGCTGGTTTAGGGTGTGCTTTGCCAACATGAGTGAGCAGACACTTGGGATTGCATTAACAAGAATACATAATTTCATGGAAAAGAGAGAGCGGGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1900673 GO:1900674 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

449

Amino Acids

50.3

Weight (kDa)

5.71

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26200
fragaria_vesca	FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950 FvH4_1g06950
malus_domestica	MD02G1073800.v1.1 MD02G1073900.v1.1 MD15G1203500.v1.1
prunus_persica	Prupe.7G213800_v2.0.a1 Prupe.7G213900_v2.0.a1
pyrus_communis	pycom02g05820 pycom02g05830 pycom15g18050
rosa_chinensis	RchiOBHm_Chr2g0092901 RchiOBHm_Chr2g0092911
rosa_laevigata	RLG00000016344 RLG00000016346
rosa_multiflora	Rmu_sc0000965.1_g000001 Rmu_sc0014880.1_g000003 Rmu_sc0022236.1_g000001
rosa_rugosa	Rorug02G0030000
rosa_samantha	Rh2AG075800 Rh2AG075900 Rh2BG077200 Rh2CG079500 Rh2DG074600
rosa_wichuraiana	Rw2G007020 Rw2G007030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1336
AciI	CCGC	2 cut(s)	395, 1336
AclWI	GGATC	4 cut(s)	256, 434, 754, 1087
AcsI	RAATTY	6 cut(s)	217, 365, 767, 786, 995, 1126
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	3 cut(s)	627, 806, 890
AfiI	CCNNNNNNNGG	2 cut(s)	234, 379
AgsI	TTSAA	6 cut(s)	243, 290, 683, 794, 1069, 1096
AjnI	CCWGG	5 cut(s)	233, 478, 865, 1216, 1243
AluBI	AGCT	8 cut(s)	56, 418, 437, 543, 572, 581, 936, 1204
AluI	AGCT	8 cut(s)	56, 418, 437, 543, 572, 581, 936, 1204
Alw26I	GTCTC	2 cut(s)	730, 1024
AlwI	GGATC	4 cut(s)	256, 434, 754, 1087
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	2 cut(s)	301, 859
ApeKI	GCWGC	5 cut(s)	19, 28, 407, 581, 1189
ApoI	RAATTY	6 cut(s)	217, 365, 767, 786, 995, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	687
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	3 cut(s)	458, 694, 931
AvaI	CYCGRG	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	84, 801
BbvI	GCAGC	5 cut(s)	31, 40, 419, 568, 1176
BccI	CCATC	4 cut(s)	93, 151, 649, 726
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	5 cut(s)	235, 480, 867, 1218, 1245
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	2 cut(s)	730, 1024
BfaI	CTAG	3 cut(s)	378, 933, 1345
BfmI	CTRYAG	2 cut(s)	6, 405
BglI	GCCNNNNNGGC	1 cut(s)	867
BisI	GCNGC	5 cut(s)	20, 29, 408, 582, 1190
BlsI	GCNGC	5 cut(s)	21, 30, 409, 583, 1191
Bme1390I	CCNGG	6 cut(s)	235, 444, 480, 867, 1218, 1245
BmeT110I	CYCGRG	1 cut(s)	742
BmrFI	CCNGG	6 cut(s)	235, 444, 480, 867, 1218, 1245
BmsI	GCATC	2 cut(s)	439, 802
BoxI	GACNNNNGTC	1 cut(s)	428
BpiI	GAAGAC	2 cut(s)	84, 801
BpmI	CTGGAG	2 cut(s)	168, 1200
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	444
Bsa29I	ATCGAT	1 cut(s)	1082
BsaJI	CCNNGG	4 cut(s)	38, 234, 298, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 379
Bse1I	ACTGG	1 cut(s)	514
Bse3DI	GCAATG	2 cut(s)	330, 1231
BseBI	CCWGG	5 cut(s)	235, 480, 867, 1218, 1245
BseCI	ATCGAT	1 cut(s)	1082
BseDI	CCNNGG	4 cut(s)	38, 234, 298, 479
BseGI	GGATG	5 cut(s)	104, 714, 758, 817, 1128
BseLI	CCNNNNNNNGG	2 cut(s)	234, 379
BseMI	GCAATG	2 cut(s)	330, 1231
BseMII	CTCAG	2 cut(s)	1025, 1230
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	5 cut(s)	27, 366, 555, 1051, 1054
BseXI	GCAGC	5 cut(s)	31, 40, 419, 568, 1176
BseYI	CCCAGC	1 cut(s)	1106
Bsh1285I	CGRYCG	1 cut(s)	1086
BshFI	GGCC	2 cut(s)	303, 861
BshVI	ATCGAT	1 cut(s)	1082
BsiEI	CGRYCG	1 cut(s)	1086
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	234, 379
BsmAI	GTCTC	2 cut(s)	730, 1024
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	303, 861
BsoBI	CYCGRG	1 cut(s)	742
Bsp143I	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	2 cut(s)	395, 1336
BspANI	GGCC	2 cut(s)	303, 861
BspCNI	CTCAG	2 cut(s)	1026, 1231
BspDI	ATCGAT	1 cut(s)	1082
BspHI	TCATGA	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	4 cut(s)	256, 434, 754, 1087
BspQI	GCTCTTC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	1336
BsrDI	GCAATG	2 cut(s)	330, 1231
BsrI	ACTGG	1 cut(s)	514
BssECI	CCNNGG	4 cut(s)	38, 234, 298, 479
BssMI	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	5 cut(s)	235, 480, 867, 1218, 1245
Bst4CI	ACNGT	3 cut(s)	536, 676, 886
Bst6I	CTCTTC	2 cut(s)	352, 678
BstC8I	GCNNGC	2 cut(s)	1338, 1342
BstDEI	CTNAG	2 cut(s)	1034, 1239
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	5 cut(s)	104, 714, 758, 817, 1128
BstKTI	GATC	8 cut(s)	193, 251, 442, 749, 853, 1056, 1082, 1086
BstMAI	GTCTC	2 cut(s)	730, 1024
BstMBI	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
BstMCI	CGRYCG	1 cut(s)	1086
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 867
BstNI	CCWGG	5 cut(s)	235, 480, 867, 1218, 1245
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSCI	CCNGG	6 cut(s)	233, 442, 478, 865, 1216, 1243
BstSFI	CTRYAG	2 cut(s)	6, 405
BstV1I	GCAGC	5 cut(s)	31, 40, 419, 568, 1176
BstV2I	GAAGAC	2 cut(s)	84, 801
BstX2I	RGATCY	1 cut(s)	746
BstYI	RGATCY	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	1082
BsuRI	GGCC	2 cut(s)	303, 861
BsuTUI	ATCGAT	1 cut(s)	1082
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	5 cut(s)	104, 714, 758, 817, 1128
BtsIMutI	CAGTG	2 cut(s)	532, 882
Cac8I	GCNNGC	2 cut(s)	1338, 1342
CciI	TCATGA	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	1082
Csp6I	GTAC	3 cut(s)	626, 805, 889
CviAII	CATG	9 cut(s)	71, 128, 299, 610, 979, 1186, 1193, 1273, 1321
CviQI	GTAC	3 cut(s)	626, 805, 889
DdeI	CTNAG	2 cut(s)	1034, 1239
DpnI	GATC	8 cut(s)	192, 250, 441, 748, 852, 1055, 1081, 1085
DpnII	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
DraIII	CACNNNGTG	1 cut(s)	656
Eam1104I	CTCTTC	2 cut(s)	352, 678
EarI	CTCTTC	2 cut(s)	352, 678
Eco130I	CCWWGG	1 cut(s)	298
Eco32I	GATATC	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	742
EcoRI	GAATTC	2 cut(s)	767, 995
EcoRII	CCWGG	5 cut(s)	233, 478, 865, 1216, 1243
EcoRV	GATATC	1 cut(s)	948
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	9 cut(s)	74, 131, 302, 613, 982, 1189, 1196, 1276, 1324
FalI	AAGNNNNNCTT	2 cut(s)	675, 707
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	9 cut(s)	70, 127, 298, 609, 978, 1185, 1192, 1272, 1320
FauI	CCCGC	2 cut(s)	388, 1329
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	5 cut(s)	20, 29, 408, 582, 1190
FokI	GGATG	5 cut(s)	111, 701, 745, 824, 1135
Fsp4HI	GCNGC	5 cut(s)	20, 29, 408, 582, 1190
FspBI	CTAG	3 cut(s)	378, 933, 1345
GluI	GCNGC	5 cut(s)	20, 29, 408, 582, 1190
GsaI	CCCAGC	1 cut(s)	1110
GsuI	CTGGAG	2 cut(s)	168, 1200
HaeIII	GGCC	2 cut(s)	303, 861
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	9 cut(s)	74, 131, 302, 613, 982, 1189, 1196, 1276, 1324
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	8 cut(s)	80, 131, 150, 688, 822, 1160, 1171, 1181
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	3 cut(s)	458, 694, 931
Hpy166II	GTNNAC	3 cut(s)	517, 826, 889
Hpy188I	TCNGA	8 cut(s)	64, 223, 317, 730, 766, 988, 1165, 1240
Hpy188III	TCNNGA	8 cut(s)	128, 147, 290, 556, 692, 744, 791, 1077
Hpy8I	GTNNAC	3 cut(s)	517, 826, 889
Hpy99I	CGWCG	1 cut(s)	1061
HpyAV	CCTTC	3 cut(s)	42, 763, 872
HpyCH4III	ACNGT	3 cut(s)	536, 676, 886
HpyCH4V	TGCA	9 cut(s)	95, 170, 401, 407, 584, 659, 815, 1192, 1298
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 867
HpyF3I	CTNAG	2 cut(s)	1034, 1239
Hsp92II	CATG	9 cut(s)	74, 131, 302, 613, 982, 1189, 1196, 1276, 1324
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
LguI	GCTCTTC	1 cut(s)	352
Lsp1109I	GCAGC	5 cut(s)	31, 40, 419, 568, 1176
LweI	GCATC	2 cut(s)	439, 802
MaeI	CTAG	3 cut(s)	378, 933, 1345
MaeIII	GTNAC	2 cut(s)	700, 910
MalI	GATC	8 cut(s)	192, 250, 441, 748, 852, 1055, 1081, 1085
MbiI	CCGCTC	1 cut(s)	1336
MboI	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
MboII	GAAGA	8 cut(s)	89, 224, 369, 695, 806, 936, 942, 1215
MflI	RGATCY	1 cut(s)	746
MluCI	AATT	9 cut(s)	217, 345, 365, 528, 767, 786, 995, 1126, 1315
MlyI	GAGTC	5 cut(s)	74, 140, 159, 831, 1165
MmeI	TCCRAC	2 cut(s)	177, 488
MroXI	GAANNNNTTC	1 cut(s)	687
MseI	TTAA	3 cut(s)	389, 1130, 1301
MslI	CAYNNNNRTG	2 cut(s)	158, 614
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	6 cut(s)	235, 444, 480, 867, 1218, 1245
MvaI	CCWGG	5 cut(s)	235, 480, 867, 1218, 1245
MwoI	GCNNNNNNNGC	5 cut(s)	25, 28, 407, 578, 867
NciI	CCSGG	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
NlaIII	CATG	9 cut(s)	74, 131, 302, 613, 982, 1189, 1196, 1276, 1324
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	700, 910
PagI	TCATGA	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	687
PfeI	GAWTC	3 cut(s)	688, 1160, 1181
PkrI	GCNGC	5 cut(s)	21, 30, 409, 583, 1191
Ple19I	CGATCG	1 cut(s)	1086
PleI	GAGTC	5 cut(s)	74, 139, 158, 830, 1165
PpsI	GAGTC	5 cut(s)	74, 139, 158, 830, 1165
PshAI	GACNNNNGTC	1 cut(s)	428
Psp6I	CCWGG	5 cut(s)	233, 478, 865, 1216, 1243
PspFI	CCCAGC	1 cut(s)	1106
PspGI	CCWGG	5 cut(s)	233, 478, 865, 1216, 1243
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	746
PvuI	CGATCG	1 cut(s)	1086
RsaI	GTAC	3 cut(s)	627, 806, 890
RsaNI	GTAC	3 cut(s)	626, 805, 889
RseI	CAYNNNNRTG	2 cut(s)	158, 614
SapI	GCTCTTC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	389, 1130, 1301
SatI	GCNGC	5 cut(s)	20, 29, 408, 582, 1190
Sau3AI	GATC	8 cut(s)	190, 248, 439, 746, 850, 1053, 1079, 1083
SchI	GAGTC	5 cut(s)	74, 140, 159, 831, 1165
ScrFI	CCNGG	6 cut(s)	235, 444, 480, 867, 1218, 1245
SfaNI	GCATC	2 cut(s)	439, 802
SfcI	CTRYAG	2 cut(s)	6, 405
SmiMI	CAYNNNNRTG	2 cut(s)	158, 614
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
Sse9I	AATT	9 cut(s)	217, 345, 365, 528, 767, 786, 995, 1126, 1315
SsiI	CCGC	2 cut(s)	395, 1336
SspMI	CTAG	3 cut(s)	378, 933, 1345
StyD4I	CCNGG	6 cut(s)	233, 442, 478, 865, 1216, 1243
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	536, 676, 886
TaqI	TCGA	4 cut(s)	874, 1059, 1082, 1086
TasI	AATT	9 cut(s)	217, 345, 365, 528, 767, 786, 995, 1126, 1315
TatI	WGTACW	2 cut(s)	804, 888
TfiI	GAWTC	3 cut(s)	688, 1160, 1181
Tru1I	TTAA	3 cut(s)	389, 1130, 1301
Tru9I	TTAA	3 cut(s)	389, 1130, 1301
TscAI	CASTG	2 cut(s)	539, 889
TseFI	GTSAC	2 cut(s)	700, 910
TseI	GCWGC	5 cut(s)	19, 28, 407, 581, 1189
Tsp45I	GTSAC	2 cut(s)	700, 910
TspDTI	ATGAA	6 cut(s)	129, 747, 760, 1139, 1209, 1309
TspRI	CASTG	2 cut(s)	539, 889
XapI	RAATTY	6 cut(s)	217, 365, 767, 786, 995, 1126
XmnI	GAANNNNTTC	1 cut(s)	687
XspI	CTAG	3 cut(s)	378, 933, 1345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.